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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014538 ID=TCONS_00014538|Name=TCONS_00014538|organism=Clytia hemisphaerica|type=transcript|length=1430bp
GCTTTACTCACAAATACAACCCTTTTGATCAAGCCAAGGCCCCTCGCACT
ATGGCCTGGAGGCGACCAAATGATGGACTAGACTTTGAACGTACTGCCAA
GGGTAACCATGTAGGCAGCGAGGGACGAGTCGCCCACTTCTTTTGCGCCA
TTTCCCATGCCGGAGGAATCGTCCTGGCAGAACAGTATCGTGATCGTTTG
AACGGAGACAGATTTTCTGCCTTTTTAAAAGAAGCCTTCCCCCAGTTGGT
GACGCCCGAAAGCCGAAAGTTCCTGATGGACGGTTGTCCAGTCCAAAATT
GCAAGAAGGCCAAACAAGCTATCAGTgacattaactgtgaagttttCAAA
ATACCCGCCCGAAGCCCTGACTTAAACCCCATTGAGAACACTTTTCATTC
GGTCAAANTGAAAGCCGAAAGTTCCTGATGGACGGTTGTCCAGTCCAAAA
TTGCAAGAAGGCCAAACAAGCTATCAGTgacattaactgtgaagttttca
aaattccccccccccGAAGCCCTGACTTAAACCCCATTGAGAACACTTTT
CACTCGGTCAAAGAGCAAATGCGCGAAGAGGCCATTGTGAAACGCATTAC
CTTTGAGAACTTTGATGACTTTTCCGCCCGTTGCCAGAGAACACTGCTAA
ACGTTTCCAAAGATCTGATCAAACGCTCTATCGATTCGATGCCGAAAAGA
CTTGACGACATTATAAGGAGGAACAGACAGAGGACCAAATATTGACTCTC
AAGGTTTATAATATATTATGATATATAAACAGTAGAGTGACTTTTACTTG
TTTCCAGTACTCACAGAGAAGTTGTCCAAGTGTTTTGGTCACTTTACATC
CACGTTACGCACATTTAACGTTTGGGTCCTAGAGAAATCACACCAAATCA
GTCCATGTCACGCCATGTCACGCATGTTACGGTGtataaataaaaagtga
aatgttAATTGTTTTTTATAAATAGTGACGTAACATGTGTAACTGGACGT
GAAATGTGCTAATTTTGTATGATTTCACAGCCAAAGGCTGTGAAGTGAGC
GTGAAATGAGCGTGAAACAGAAAAACCAACACAAATTTTCAACATCAGGG
TTAAATTTCCAAACGAAAGAGGTCTACTTAAGTGGTAGTTCACGTTACAT
CAGCACAAACTCTGCAAAGCAGCGTGCACATGGTGGGATTGAAGTGTTCA
TTTCCTCCCGGGTTAGTCCTCTGAAAAACTTGAAATACTTCCAACGAATG
TCCATCATTTGATTCTCCTGATCCTCATATTTGTCCTGTTTGGGCCACCT
AATCATCCCACGACTGGTCATGAAGATAGGAATATCCCGGGTAACAACTA
CGTCCTTGGTCATGACGTTCTTAGGGGCTGGGAGTTTGGTAACTTTTCCC
TCCAACAAGCGCAGAAGATCGTCCCAGGAG Run BLAST on NCBI protein sequence of TCONS_00014538-protein >TCONS_00014538-protein ID=TCONS_00014538-protein|Name=TCONS_00014538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
FTHKYNPFDQAKAPRTMAWRRPNDGLDFERTAKGNHVGSEGRVAHFFCAI
SHAGGIVLAEQYRDRLNGDRFSAFLKEAFPQLVTPESRKFLMDGCPVQNC
KKAKQAISDINCEVFKIPARSPDLNPIENTFHSVKXKAESS Run BLAST on NCBI transcript from alignment at sc0000188:440487..441916 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014538 ID=TCONS_00014538|Name=TCONS_00014538|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at sc0000188:440487..441916 (Clytia hemisphaerica)
CTCCTGGGACGATCTTCTGCGCTTGTTGGAGGGAAAAGTTACCAAACTCC
CAGCCCCTAAGAACGTCATGACCAAGGACGTAGTTGTTACCCGGGATATT
CCTATCTTCATGACCAGTCGTGGGATGATTAGGTGGCCCAAACAGGACAA
ATATGAGGATCAGGAGAATCAAATGATGGACATTCGTTGGAAGTATTTCA
AGTTTTTCAGAGGACTAACCCGGGAGGAAATGAACACTTCAATCCCACCA
TGTGCACGCTGCTTTGCAGAGTTTGTGCTGATGTAACGTGAACTACCACT
TAAGTAGACCTCTTTCGTTTGGAAATTTAACCCTGATGTTGAAAATTTGT
GTTGGTTTTTCTGTTTCACGCTCATTTCACGCTCACTTCACAGCCTTTGG
CTGTGAAATCATACAAAATTAGCACATTTCACGTCCAGTTACACATGTTA
CGTCACTATTTATAAAAAACAATTaacatttcactttttatttataCACC
GTAACATGCGTGACATGGCGTGACATGGACTGATTTGGTGTGATTTCTCT
AGGACCCAAACGTTAAATGTGCGTAACGTGGATGTAAAGTGACCAAAACA
CTTGGACAACTTCTCTGTGAGTACTGGAAACAAGTAAAAGTCACTCTACT
GTTTATATATCATAATATATTATAAACCTTGAGAGTCAATATTTGGTCCT
CTGTCTGTTCCTCCTTATAATGTCGTCAAGTCTTTTCGGCATCGAATCGA
TAGAGCGTTTGATCAGATCTTTGGAAACGTTTAGCAGTGTTCTCTGGCAA
CGGGCGGAAAAGTCATCAAAGTTCTCAAAGGTAATGCGTTTCACAATGGC
CTCTTCGCGCATTTGCTCTTTGACCGAGTGAAAAGTGTTCTCAATGGGGT
TTAAGTCAGGGCTTCggggggggggaattttgaaaacttcacagttaatg
tcACTGATAGCTTGTTTGGCCTTCTTGCAATTTTGGACTGGACAACCGTC
CATCAGGAACTTTCGGCTTTCANTTTGACCGAATGAAAAGTGTTCTCAAT
GGGGTTTAAGTCAGGGCTTCGGGCGGGTATTTTGaaaacttcacagttaa
tgtcACTGATAGCTTGTTTGGCCTTCTTGCAATTTTGGACTGGACAACCG
TCCATCAGGAACTTTCGGCTTTCGGGCGTCACCAACTGGGGGAAGGCTTC
TTTTAAAAAGGCAGAAAATCTGTCTCCGTTCAAACGATCACGATACTGTT
CTGCCAGGACGATTCCTCCGGCATGGGAAATGGCGCAAAAGAAGTGGGCG
ACTCGTCCCTCGCTGCCTACATGGTTACCCTTGGCAGTACGTTCAAAGTC
TAGTCCATCATTTGGTCGCCTCCAGGCCATAGTGCGAGGGGCCTTGGCTT
GATCAAAAGGGTTGTATTTGTGAGTAAAGC Coding sequence (CDS) from alignment at sc0000188:440487..441916 >TCONS_00014538 ID=TCONS_00014538|Name=TCONS_00014538|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000188:440487..441916 (Clytia hemisphaerica)
TCAGGAACTTTCGGCTTTCANTTTGACCGAATGAAAAGTGTTCTCAATGG
GGTTTAAGTCAGGGCTTCGGGCGGGTATTTTGaaaacttcacagttaatg
tcACTGATAGCTTGTTTGGCCTTCTTGCAATTTTGGACTGGACAACCGTC
CATCAGGAACTTTCGGCTTTCGGGCGTCACCAACTGGGGGAAGGCTTCTT
TTAAAAAGGCAGAAAATCTGTCTCCGTTCAAACGATCACGATACTGTTCT
GCCAGGACGATTCCTCCGGCATGGGAAATGGCGCAAAAGAAGTGGGCGAC
TCGTCCCTCGCTGCCTACATGGTTACCCTTGGCAGTACGTTCAAAGTCTA
GTCCATCATTTGGTCGCCTCCAGGCCATAGTGCGAGGGGCCTTGGCTTGA
TCAAAAGGGTTGTATTTGTGAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014538-exon-sc0000188-1491911889:440487..441916 | TCONS_00014538-exon-sc0000188-1491911889:440487..441916 | Clytia hemisphaerica | exon |
| TCONS_00014538-exon-sc0000188-1510915933:440487..441916 | TCONS_00014538-exon-sc0000188-1510915933:440487..441916 | Clytia hemisphaerica | exon |
| TCONS_00014538-exon-sc0000188-1575043694:440487..441916 | TCONS_00014538-exon-sc0000188-1575043694:440487..441916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:440487..441916 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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