TCONS_00014531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014531
Unique NameTCONS_00014531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014531 ID=TCONS_00014531|Name=TCONS_00014531|organism=Clytia hemisphaerica|type=transcript|length=836bp
GGAGTTTGTCTCGACACACTCACTGCGACCTTTCCCTtctatccattgca
aggaaaaGTGGAGAACGACATTCAGCACAGTTGGGAGAACTCTGGCCACG
ACATCAATCATCTTCCAAGACTGCCACCAATGGTTGGAGGAGACGTTGAC
GTGATGATAGGTATACGTTATCTTCGTTTCTTTCCTAAATTCATCCACCA
GCTACCTTCTGGCTTGACCATCTACCNACGTGATGATAGGTATACGTTAT
CTTCGTTTCTTTCCTAAATTCATCCACCAGTTACCTTCTGGCTTGACCAT
CTACCAATCACAATTCAAGAACATCGATGGATCTTATGGGGTGATCGGTG
GTCCCCATGAGGTATTCACAAGTATCGAAAATCATCATCACTCAACTTCG
TCACAGTTTGTAGCAAGTCAACTGGAAGCAGCAAAGTTCGTATTCTACAT
TGATCCAGACATTCGATTACTTGGATCAGCTACCTTCAGTGAGGTTCGAC
ATGACTTGTATTTCACTAACAACCCAACTTACCAAATCAACAACGACGAA
TCTGAACCATCAACTTCATACATCACCAATCTTAATGAGAAGTTCGAATC
AGTTGGTACAGACCTTAACTATCGCTGTGTCAATTGTCGAAAGTGTTTAA
CCTGTAAGAACCATTCTACAGAAGATTCCATTAGCATCCAAGAGGAGGTC
GAGCAAGACTTGATTAATCGCTCCATCACTATCGACCCATCCAATTGTTC
ATCGATTGCTAATCTTCCACTAATACACGACCCTCTGGTCAAACTGGCAC
CAAATCGAGACATTGCACTTCGCGTTTACATACAAC
Run BLAST on NCBI

protein sequence of TCONS_00014531-protein

>TCONS_00014531-protein ID=TCONS_00014531-protein|Name=TCONS_00014531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MIGIRYLRFFPKFIHQLPSGLTIYQSQFKNIDGSYGVIGGPHEVFTSIEN
HHHSTSSQFVASQLEAAKFVFYIDPDIRLLGSATFSEVRHDLYFTNNPTY
QINNDESEPSTSYITNLNEKFESVGTDLNYRCVNCRKCLTCKNHSTEDSI
SIQEEVEQDLINRSITIDPSNCSSIANLPLIHDPLVKLAPNRDIALRVYI
Q
Run BLAST on NCBI

transcript from alignment at sc0000188:367612..368447

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014531 ID=TCONS_00014531|Name=TCONS_00014531|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0000188:367612..368447 (Clytia hemisphaerica)
GTTGTATGTAAACGCGAAGTGCAATGTCTCGATTTGGTGCCAGTTTGACC
AGAGGGTCGTGTATTAGTGGAAGATTAGCAATCGATGAACAATTGGATGG
GTCGATAGTGATGGAGCGATTAATCAAGTCTTGCTCGACCTCCTCTTGGA
TGCTAATGGAATCTTCTGTAGAATGGTTCTTACAGGTTAAACACTTTCGA
CAATTGACACAGCGATAGTTAAGGTCTGTACCAACTGATTCGAACTTCTC
ATTAAGATTGGTGATGTATGAAGTTGATGGTTCAGATTCGTCGTTGTTGA
TTTGGTAAGTTGGGTTGTTAGTGAAATACAAGTCATGTCGAACCTCACTG
AAGGTAGCTGATCCAAGTAATCGAATGTCTGGATCAATGTAGAATACGAA
CTTTGCTGCTTCCAGTTGACTTGCTACAAACTGTGACGAAGTTGAGTGAT
GATGATTTTCGATACTTGTGAATACCTCATGGGGACCACCGATCACCCCA
TAAGATCCATCGATGTTCTTGAATTGTGATTGGTAGATGGTCAAGCCAGA
AGGTAACTGGTGGATGAATTTAGGAAAGAAACGAAGATAACGTATACCTA
TCATCACGTNGGTAGATGGTCAAGCCAGAAGGTAGCTGGTGGATGAATTT
AGGAAAGAAACGAAGATAACGTATACCTATCATCACGTCAACGTCTCCTC
CAACCATTGGTGGCAGTCTTGGAAGATGATTGATGTCGTGGCCAGAGTTC
TCCCAACTGTGCTGAATGTCGTTCTCCACttttccttgcaatggatagaA
GGGAAAGGTCGCAGTGAGTGTGTCGAGACAAACTCC

Coding sequence (CDS) from alignment at sc0000188:367612..368447

>TCONS_00014531 ID=TCONS_00014531|Name=TCONS_00014531|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000188:367612..368447 (Clytia hemisphaerica)
TTGTATGTAAACGCGAAGTGCAATGTCTCGATTTGGTGCCAGTTTGACCA
GAGGGTCGTGTATTAGTGGAAGATTAGCAATCGATGAACAATTGGATGGG
TCGATAGTGATGGAGCGATTAATCAAGTCTTGCTCGACCTCCTCTTGGAT
GCTAATGGAATCTTCTGTAGAATGGTTCTTACAGGTTAAACACTTTCGAC
AATTGACACAGCGATAGTTAAGGTCTGTACCAACTGATTCGAACTTCTCA
TTAAGATTGGTGATGTATGAAGTTGATGGTTCAGATTCGTCGTTGTTGAT
TTGGTAAGTTGGGTTGTTAGTGAAATACAAGTCATGTCGAACCTCACTGA
AGGTAGCTGATCCAAGTAATCGAATGTCTGGATCAATGTAGAATACGAAC
TTTGCTGCTTCCAGTTGACTTGCTACAAACTGTGACGAAGTTGAGTGATG
ATGATTTTCGATACTTGTGAATACCTCATGGGGACCACCGATCACCCCAT
AAGATCCATCGATGTTCTTGAATTGTGATTGGTAGATGGTCAAGCCAGAA
GGTAACTGGTGGATGAATTTAGGAAAGAAACGAAGATAACGTATACCTAT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008137XLOC_008137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014531-proteinTCONS_00014531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014531-exon-sc0000188-1491911889:367612..368447TCONS_00014531-exon-sc0000188-1491911889:367612..368447Clytia hemisphaericaexon
TCONS_00014531-exon-sc0000188-1510915933:367612..368447TCONS_00014531-exon-sc0000188-1510915933:367612..368447Clytia hemisphaericaexon
TCONS_00014531-exon-sc0000188-1575043694:367612..368447TCONS_00014531-exon-sc0000188-1575043694:367612..368447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:367612..368447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.819944	0.63119	0.640622	0.687312	0	0.349656	0.613756	0.44611	0.415065	0.472721	0.234853	1.16889	0	0	0.230042	0	0.204084	0.148406	0	0	0	0.107883	0.105369	0.259746	0	0.224499	1.86145	2.15899	0.114929	0.218266
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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