TCONS_00014498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014498
Unique NameTCONS_00014498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014498 ID=TCONS_00014498|Name=TCONS_00014498|organism=Clytia hemisphaerica|type=transcript|length=1920bp
GGAAATATCATGTGTTTCCATTTCAAGAAATCAGTCAAGAATCAATACAC
AATCTCTTTTGCTTACTatttaccATATAGAAGATGTCATGTCTAAGTCA
AGCACAAGCAGTCCACTAAAGCTTAACAGaacatttgcaaaaaatatcGT
AAAGCACACAGATGACAATAATAGGATAACATCCAATATCCAACAAACTA
ATCAACGTAAATTTGTAAACCAAGAGAGGAAAAAACATACTAAATTACAA
TTGAGTGCTGAAGGAAAATCAACAAAGCAAGGGAAAACTATGTACAGTGA
CTACGTTACAGAAAAGCTTTctgaaaaaactcaaaagaaGGGCATCATTC
ATCCATTGGAACAGATGAAAAAGCTTGTCAAAGATGCTGCAGAATTTGAT
AATACAATGTCagagaaagaaattcaaaaactgAGTGGCACTTTCATACC
ATCAAAGCGCCCTAAAATTATTCTTGATAAGACGCTACTGCATAATCACT
TGAAGCATACCAGCGTGCACAATAGATTGAAAGAAGAAGGTGAAATGTGG
GAGAAATTTCAAGTGGAAAAGAAGcgCACAAAGCTGCAGTCAAAGTCTTT
AAAGGCTCCAATAAGACGTGGTGGCATGTATGCTGACTCTGAACCAGGGG
CAAGTCTCACTGTCAAATTACCAGAGAAAGAAAGATCCATCAAAAAAGAG
AGATCAATCAAAAAAGAGAGCAGGAAAAGTTTGAAACGGACTGTTATTAG
AACTGTCACTTCTAATCAAGAACTTTCTCGTCGTAAAGTGAAGAGACCTG
TTCAAACCATTGACATTCCATCAAGTAATGATGAAAGCAGTAACCAAAAT
CAACCTGTTCAGGGAAAGCGTAAAGTTAGTAGAATCTCATTGAAAACAAA
AGAGGCCAGCTCTCACAAAAGAAACGTCATCATTGAAGATGTCCCactta
aaaagaagaaaaccgAGCCTGCTATTGTAAGAACGTATGGTAAATTGAAT
GCAGATATGATTGATGAAAGACCTACATCTCAAGTCTCCTCTGAGAAATG
GGGCCATGATGGTTTTTTCGAACAAGAGAAAACGCCAGTTAAAAAGATAA
GTATCGTTAAAAGAAAACCGATCACCGTGTCGGATGATGAAGCGAACGAG
GATGATTCAATTCACAAAACAAAAGCACGACATATCCTCAAAAGTAGTAT
CCATGTTAAACCAGCAGTTAAAGAAAAGTCTGTTGAGCGACAAACAGAGA
GACCGAAAGTACATAGAACAATACAAAAGAAACCAACAAGAGAAACAACC
TTAGTGAAAAGGAAAGAACGAAAACAACGCAGTCAAAGTTCTTCTTCGTC
TTCATCTTCTTCGGCATCAGGCAGCTCTTCAAGCAGCAGTAGTAGCAGTG
ATAGTGATAGTGGATCCTCTTCCAGCCTCACCAGTAGCTCATCTGATGAC
GAAGATGAAAAACCTACAAAACGTAAACAAACCGTTGCCAAGCAAAAAAA
ACCTGCTGTCAAACATAGGCGCAATAAAGTGAAAAACACTTTCTCTGATT
ACGACAGTGACTTCCAACCAagaaaatgatttcttttttttattcagact
ttgtatttgtaatttttcataattgtttTGTGCTTCTTTTAAAGGGTTTA
CCACCTATCAATCTGACTTATAGAACTAGTAATCACTAACGCAAAGTAGT
CCTCTagagttttttatttgttatcATTTATAGGAGATTTTATGTGGCAA
TTTTATAGTTTTATTCCTGTCTAATTAATCTGTTATGAAAGTTATTTATT
TNCAATTTTATAGTTTTATTCCTGTCTAATTAATCTTTTATGAAAGTTAT
TTATTTCTCCAGAGAGCCCTGTTGAATTTCTTAATTCACTAACTTTACTG
CATCATTATTAAACTTTCCC
Run BLAST on NCBI

transcript from alignment at sc0000188:100100..104886-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014498 ID=TCONS_00014498|Name=TCONS_00014498|organism=Clytia hemisphaerica|type=transcript|length=4787bp|location=Sequence derived from alignment at sc0000188:100100..104886- (Clytia hemisphaerica)
GGAAATATCATGTGTTTCCATTTCAAGAAATCAGTCAAGAATCAATACAC
AATCTCTTTTGCTTACTATTTACCGTAAGTTGGTCTAATATCGACATCCC
ACGTCTAATTCCGTTTTTTGGTTTTTAGTATCCTAATTAGGATGTTGATT
GCTATTTTGGACACTTTTTTGTATCCAATTTAAGATACTCTCCTAAGTAG
GAGAGATTGCCGAATGTATCCTAACTTGCACTTGATCTTGACTGGAAATG
ACTTCATTCAAGTCATTGATGAAGCAAGCAATCAACAAAAGAAACCAATA
AAAGATCAAAGAGAAAAGCCATAAGTGGGAAAAAATGATTGTTTGCCAAT
CTTAGGGATTTGCCAAACTCAACTAGAATTTCTGTCCAACTATCTTCTTT
CATGAGATTCGGGTGGCAGAGCAGCATATGCATTATACCCTTATTTCCTC
TGTCTAAGAGTGTAATAGTGGGCTAGCAGTGGTGCAGCCGAAACAGTTGT
GAAGAAGGCGTCTAGGTGTTTTTGAATATTTCTTTGGGACAGTTTGTCAA
ATCTCTTCCAGATATTTTTGTTTGTAATGTTAACAGCTTTGAGATTGCAA
ATACTCGCCAATCTCTGACTTTTATGGCAGAAAATGTCTCCTTTTCTTTT
GTCAAAATTTAAATTTGGGACCTTTCCTTCGATGACGTTCCAGAAATTAT
ATTGATACTCTCTCCGTCTTTCGAGGCTGTACAATTCCAATGATTTTAGT
GTTTCCCAATAGCTGAGATGTCTGAGACATGAAATACCATGTTGGAACGA
AAATCAGGCAAACCTTTGCTCTTTTGAACAAGTTTAGTGCTTTTTTTTTT
AATAAAGTAGGCTTACTTACTACTAAGGCTGATTGTGAAAAATCCACAGG
TAGGAAATTAAAATCCTATGGTGAAAAGTTTACTTTTTGATTGGACTACA
AAATGCGCATGATTTTGACACCCGTTCAGCTCTTCCACCGGTTCTTGGTT
CAAAGACTGGTGTTGTCAAATTTGCAGCAGGAAAACTGGGATATTTGACA
ACGTTGCAGAATTCAACAGCACTAAAGTTGCAACGCTGTCATTCTATTGA
ATTTTCCGAGCTGTTACCGTACTTAATTACCTATAACAATCCGAAATTAT
CCTTCAAAACAATCAAATTGATCTGATTGGTTGAAACTTAAAAAGTATTA
TAATTATTGATCTAAATGAACCAATCAGTGCTCAAAAAAAGGGTTTGATT
ATTGAGGGAAATTTTGGAATGTAATAGGTAAGTACGATAATACTGACTAC
CTAATCTGTTTGGATATTTTCCAGACCAGAACTCCTATTTACCTATGCAA
AATCTTTATTCTAAATTAATTTACTTGGCTTGTAATTTGAACAGTATTTA
CATAAACTACTTCAAATAGGCTATTTTAGAATAATTATTAGAGTATTTAC
ATTGTGTATTTGCCTTCATAATTCCAAGCAGTTTTGAAGTATTTTATTGT
ATACAGTAAGTAGTCAGGTATTTTTTGGCTATAACTTTCTAAACAACTGA
GTGAAGAAAAATGAAGGAGAAAAAAAAAAGAACCTTCTTGTTGTAGAATA
GAATCATTGGTATCCTTGGCAGAACAGTGCTATATCCCATCAATTACCAT
GGCTTCAAAATTCTTTAAAGGGTACCTTGTGAGTTCAGCAGCAACCCAAG
ACTACACTGAAAAATTCACTCAATGTAACTGGATAACCCAGCCGATTGAC
TGAGCCCTGGCCCCACGCACCTGGGGTAGCCAATTCGAGTCTAGTCAGGG
TCCAAATTTTTCAAAAGGCATAAGAGACTACCCAAGGAGACATGTACCAG
ACCCCCCCCCTAGCTCAAGATTGGGAATTTTCTGGAGATGTTAGTCATAT
CTACAGGAGAAGGCATGTCAAATTTCAAGCTCCAACCGCCCATGGTTGAC
GAAGAATTAAAACAGAAAATTAAGGTGCTGGTCGACCTTGGCCAATTAAT
TTCAGAACTTATTCAGACACTTTATCCCTCTCTTTTCATGCGGTCAAAGT
GGTTGAGGTCATTCTCTACCATCTCGAAAACAAGTCTGCGAAATATCTAA
TTCAAAGCAAAAAAGATTGGTGAAACGGCATCTCTTTAGATTTTCCGTTG
AGTCCATTTTGTTGATCTGGGCTCTGCTGGGCTTTAAACCTTTACACAAA
AACCAGAAAAATTGAAAACGCTGTGGAATCACTCCAGGTCAATTTGTCCA
TCCTGTACATGCACCTGAATTTTATGCACAGTTGCATAAATATTTAAAAA
GTTACCAAAATCGTTTAGGGAGGGGGCCTCAATTTTTTTTACATTANAGT
TGCATAAATATTTAAAAAGTTACCAAAATCGTTTAGGGAGGGGGCCTCAA
TTTTTGTTACATTTTTAACTTTTATGTTTTTTTCCTTTAGATATAGAAGA
TGTCATGTCTAAGTCAAGCACAAGCAGTCCACTAAAGCTTAACAGAACAT
TTGCAAAAAATATCGTAAAGCACACAGATGACAATAATAGGATAACATCC
AATATCCAACAAACTAATCAACGTAAATTTGTAAACCAAGAGAGGAAAAA
ACATACTAAATTACAATTGAGTGCTGAAGGAAAATCAACAAAGCAAGGGA
AAACTATGTACAGTGACTACGTTACAGAAAAGCTTTCTGAAAAAACTCAA
AAGAAGGGCATCATTCATCCATTGGAACAGATGAAAAAGCTTGTCAAAGA
TGCTGCAGAATTTGATAATACAATGTCAGAGAAAGAAATTCAAAAACTGA
GTGGCACTTTCATACCATCAAAGCGCCCTAAAATTATTCTTGATAAGACG
CTACTGCATAATCACTTGAAGGTTAGTTAGATATGACAACTACACTTAAA
AATAACACTTTCTGTTTTTCAAATGCTACTTACTTATAAGGAAAATCTTT
TTAAAAGCTTTCAAGCCAGGGGAAAACATGGATTAGATTGTTTAACTTTG
AGAGATTGTATAAAAATAAGCTTCTAAGTGGATTGTTAGTTGTACATGTT
TTTGTTTTCCATGTTAGCATACCAGCGTGCACAATAGATTGAAAGAAGAA
GGTGAAATGTGGGAGAAATTTCAAGTGGAAAAGAAGGTGAGTTTTTGGAC
CAACCTGTCGTTCGTTCGTTCGTTCGTTCGTTCATTTCTTGAATTTCTCG
AGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTGACGCAAAATGA
CTATACCTAAAATGTGACAGAGCCCGATTTTCAAAATTTTCTGCCAAAAA
AATAATCTGTTGATGTTTACAATTTGACCTTTGACCGAGTAATTTAAAAG
CATCTGAAGTTGAGCCAGTGCGGTTAGTTAGATATCATATTGACAAATAA
ATCATTCAAATCATACAAAAGTAGCCCTTTTTTCATTTTAGCGCACAAAG
CTGCAGTCAAAGTCTTTAAAGGCTCCAATAAGACGTGGTGGCATGTATGC
TGACTCTGAACCAGGGGCAAGTCTCACTGTCAAATTACCAGAGAAAGAAA
GATCCATCAAAAAAGAGAGATCAATCAAAAAAGAGAGCAGGAAAAGTTTG
AAACGGACTGTTATTAGAACTGTCACTTCTAATCAAGAACTTTCTCGTCG
TAAAGTGAAGAGACCTGTTCAAACCATTGACATTCCATCAAGTAATGATG
AAAGCAGTAACCAAAATCAACCTGTTCAGGGAAAGCGTAAAGTTAGTAGA
ATCTCATTGAAAACAAAAGAGGCCAGCTCTCACAAAAGAAACGTCATCAT
TGAAGATGTCCCACTTAAAAAGAAGAAAACCGAGCCTGCTATTGTAAGAA
CGTATGGTAAATTGAATGCAGATATGATTGATGAAAGACCTACATCTCAA
GTCTCCTCTGAGAAATGGGGCCATGATGGTTTTTTCGAACAAGAGAAAAC
GCCAGTTAAAAAGATAAGTATCGTTAAAAGAAAACCGATCACCGTGTCGG
ATGATGAAGCGAACGAGGATGATTCAATTCACAAAACAAAAGCACGACAT
ATCCTCAAAAGTAGTATCCATGTTAAACCAGCAGTTAAAGAAAAGTCTGT
TGAGCGACAAACAGAGAGACCGAAAGTACATAGAACAATACAAAAGAAAC
CAACAAGAGAAACAACCTTAGTGAAAAGGAAAGAACGAAAACAACGCAGT
CAAAGTTCTTCTTCGTCTTCATCTTCTTCGGCATCAGGCAGCTCTTCAAG
CAGCAGTAGTAGCAGTGATAGTGATAGTGGATCCTCTTCCAGCCTCACCA
GTAGCTCATCTGATGACGAAGATGAAAAACCTACAAAACGTAAACAAACC
GTTGCCAAGCAAAAAAAACCTGCTGTCAAACATAGGCGCAATAAAGTGAA
AAACACTTTCTCTGATTACGACAGTGACTTCCAACCAAGAAAATGATTTC
TTTTTTTTATTCAGACTTTGTATTTGTAATTTTTCATAATTGTTTTGTGC
TTCTTTTAAAGGGTTTACCACCTATCAATCTGACTTATAGAACTAGTAAT
CACTAACGCAAAGTAGTCCTCTAGAGTTTTTTATTTGTTATCATTTATAG
GAGATTTTATGTGGCAATTTTATAGTTTTATTCCTGTCTAATTAATCTGT
TATGAAAGTTATTTATTTNCAATTTTATAGTTTTATTCCTGTCTAATTAA
TCTTTTATGAAAGTTATTTATTTCTCCAGAGAGCCCTGTTGAATTTCTTA
ATTCACTAACTTTACTGCATCATTATTAAACTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008110XLOC_008110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014498-exon-sc0000188-1575043694:104813..104886TCONS_00014498-exon-sc0000188-1575043694:104813..104886Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1575043694:102016..102446TCONS_00014498-exon-sc0000188-1575043694:102016..102446Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1575043694:101751..101819TCONS_00014498-exon-sc0000188-1575043694:101751..101819Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1575043694:100100..101445TCONS_00014498-exon-sc0000188-1575043694:100100..101445Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1510915933:104813..104886TCONS_00014498-exon-sc0000188-1510915933:104813..104886Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1510915933:102016..102446TCONS_00014498-exon-sc0000188-1510915933:102016..102446Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1510915933:101751..101819TCONS_00014498-exon-sc0000188-1510915933:101751..101819Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1510915933:100100..101445TCONS_00014498-exon-sc0000188-1510915933:100100..101445Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1491911889:104813..104886TCONS_00014498-exon-sc0000188-1491911889:104813..104886Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1491911889:102016..102446TCONS_00014498-exon-sc0000188-1491911889:102016..102446Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1491911889:101751..101819TCONS_00014498-exon-sc0000188-1491911889:101751..101819Clytia hemisphaericaexon
TCONS_00014498-exon-sc0000188-1491911889:100100..101445TCONS_00014498-exon-sc0000188-1491911889:100100..101445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:100100..104886 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.04121	2.21362	4.8365	9.88284e-09	36.5864	31.8069	10.9519	22.7419	4.4561e-09	2.2574	3.01676e-05	3.70789e-10	0.0127855	0.129803	0.563154	2.0945	0.106866	0.961319	4.72357e-10	0.00458523	3.10484	0.662327	2.00777	0.12254	5.23193	7.50538	2.89761e-06	0.0022248	5.29015	1.51664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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