|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014469 ID=TCONS_00014469|Name=TCONS_00014469|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CTCTGGTTCACGGGTCAAATTCCCTGGGAAATAGatcaaacaaaaatata
atgTCTGCAGAACGAGTAAATTTAAACTTGTCgtgctttcagaaaaaaat
agtaATAATGAATCTCCTAAACATTTAAAATGAGTTAGGatattcttgaa
atattttaattaacGGCCAATCCTAAAaagttttctggcaaatttCATAG
TTTCTTTCCGAAGTTCTTTATTCCGATAAGTGTAAAGAAACGGATTCAGC
GCACTATTAACAAAAGTCAATACCATGAATATCTCGTAACAAAGCAAAAC
TTGTTGGCTGACAGATGTTCCGCTAGACCCCATAATGTTGATGTAAATGT
AAAAACCAGCGGTCGGCATCCAACAGACTAGAAAGAATCCGACTAGCATT
GCTATCGTTCTCACAGTCCGAATGTCTCGTTTGATCGATTTCTTAACCTT
GCGAATAGTCTCCTTTCCTCCGTGCAATGTTTGACTTATCAGAGTTGAAG
AAGAGCGTGGCTTCAAGGTTGGAGTGCTCAGCGTATGACTCATGAGAAAA
GGAAGTGAAGTTTTGTTAGCATCACGCGTGCTATTGTTGATATCTCCGGT
AAAAGCTTTGATAACAGGTAAAGAAGAAGTCCTTCTGATTCCAAGCTTTT
TTTGGGAAAGTGGTGGAGTCAAATACAAGTGATTACTCGAATTTGATAAA
TCAGTCATTAAGATCTCATTCGAGGAAACAGATAGTTTGCAGTCATGTTC
AACTTTTATATTCAGTTTCCTAGCAACCAAATAAATCTTGATATACACTA
CCACGATTGTAATTCCAGGTATATAAAACCCTGGAGGGCCTATGATAAGA
AAAAGTTTTCTCGGTATGCCTCCAACACATGTTGATAAAATACGTCCCCA
ATGTAAGAAGTCATGAAAAGTGATTGAATTGAAGCAAATAGTCCAGAACC
AGACGATGCAGATAACAATACAAGCCAATCTTTTCGTCATCCATCTCTCA
TATTTATACGGGTAGGCTATAGCAAACATACGGTCAAAGCTCACCACAGC
TAAACTTATCAACGATCCTGAAGCtgtaacaataaaaaaatatttccgtA
ACAAACATAGTTTCGGATGCGAATTGTTTGCATTTTGATTGTAAAAGCGT
TCAAGGTATAAGGGCGTATAAACTACTGACGTTAATAAATCAGCTGTAGC
CAAGCTTAGGAGCAATAAATTTGTAGCGGTCCTCAATTTATGTCTCGAAG
ATATAACAGTGACCAGCGTGATATTCCCAACGATTGATATTAGAGCGAGT
ATCGAACAAATCACTATATAGATGATTCTGTACGGTTCTGTAAAGTCTCT
TTTTGCGTATCCAGGCTTTATTTTGAATGGTGGGAAAGTGAAAGTTTCAC
TGATAGTGCTTCCATTGGTTCTCTGGATAAAATGGTATCCATTCTCTTCC
ATATTGAGTCTCAA Run BLAST on NCBI protein sequence of TCONS_00014469-protein >TCONS_00014469-protein ID=TCONS_00014469-protein|Name=TCONS_00014469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
LRLNMEENGYHFIQRTNGSTISETFTFPPFKIKPGYAKRDFTEPYRIIYI
VICSILALISIVGNITLVTVISSRHKLRTATNLLLLSLATADLLTSVVYT
PLYLERFYNQNANNSHPKLCLLRKYFFIVTASGSLISLAVVSFDRMFAIA
YPYKYERWMTKRLACIVICIVWFWTICFNSITFHDFLHWGRILSTCVGGI
PRKLFLIIGPPGFYIPGITIVVVYIKIYLVARKLNIKVEHDCKLSVSSNE
ILMTDLSNSSNHLYLTPPLSQKKLGIRRTSSLPVIKAFTGDINNSTRDAN
KTSLPFLMSHTLSTPTLKPRSSSTLISQTLHGGKETIRKVKKSIKRDIRT
VRTIAMLVGFFLVCWMPTAGFYIYINIMGSSGTSVSQQVLLCYEIFMVLT
FVNSALNPFLYTYRNKELRKETMKFARKLFRIGR Run BLAST on NCBI transcript from alignment at sc0000187:452765..454228 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014469 ID=TCONS_00014469|Name=TCONS_00014469|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at sc0000187:452765..454228 (Clytia hemisphaerica)
TTGAGACTCAATATGGAAGAGAATGGATACCATTTTATCCAGAGAACCAA
TGGAAGCACTATCAGTGAAACTTTCACTTTCCCACCATTCAAAATAAAGC
CTGGATACGCAAAAAGAGACTTTACAGAACCGTACAGAATCATCTATATA
GTGATTTGTTCGATACTCGCTCTAATATCAATCGTTGGGAATATCACGCT
GGTCACTGTTATATCTTCGAGACATAAATTGAGGACCGCTACAAATTTAT
TGCTCCTAAGCTTGGCTACAGCTGATTTATTAACGTCAGTAGTTTATACG
CCCTTATACCTTGAACGCTTTTACAATCAAAATGCAAACAATTCGCATCC
GAAACTATGTTTGTTacggaaatatttttttattgttacaGCTTCAGGAT
CGTTGATAAGTTTAGCTGTGGTGAGCTTTGACCGTATGTTTGCTATAGCC
TACCCGTATAAATATGAGAGATGGATGACGAAAAGATTGGCTTGTATTGT
TATCTGCATCGTCTGGTTCTGGACTATTTGCTTCAATTCAATCACTTTTC
ATGACTTCTTACATTGGGGACGTATTTTATCAACATGTGTTGGAGGCATA
CCGAGAAAACTTTTTCTTATCATAGGCCCTCCAGGGTTTTATATACCTGG
AATTACAATCGTGGTAGTGTATATCAAGATTTATTTGGTTGCTAGGAAAC
TGAATATAAAAGTTGAACATGACTGCAAACTATCTGTTTCCTCGAATGAG
ATCTTAATGACTGATTTATCAAATTCGAGTAATCACTTGTATTTGACTCC
ACCACTTTCCCAAAAAAAGCTTGGAATCAGAAGGACTTCTTCTTTACCTG
TTATCAAAGCTTTTACCGGAGATATCAACAATAGCACGCGTGATGCTAAC
AAAACTTCACTTCCTTTTCTCATGAGTCATACGCTGAGCACTCCAACCTT
GAAGCCACGCTCTTCTTCAACTCTGATAAGTCAAACATTGCACGGAGGAA
AGGAGACTATTCGCAAGGTTAAGAAATCGATCAAACGAGACATTCGGACT
GTGAGAACGATAGCAATGCTAGTCGGATTCTTTCTAGTCTGTTGGATGCC
GACCGCTGGTTTTTACATTTACATCAACATTATGGGGTCTAGCGGAACAT
CTGTCAGCCAACAAGTTTTGCTTTGTTACGAGATATTCATGGTATTGACT
TTTGTTAATAGTGCGCTGAATCCGTTTCTTTACACTTATCGGAATAAAGA
ACTTCGGAAAGAAACTATGaaatttgccagaaaacttTTTAGGATTGGCC
gttaattaaaatatttcaagaatatCCTAACTCATTTTAAATGTTTAGGA
GATTCATTATtactatttttttctgaaagcacGACAAGTTTAAATTTACT
CGTTCTGCAGAcattatatttttgtttgatCTATTTCCCAGGGAATTTGA
CCCGTGAACCAGAG Coding sequence (CDS) from alignment at sc0000187:452765..454228 >TCONS_00014469 ID=TCONS_00014469|Name=TCONS_00014469|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000187:452765..454228 (Clytia hemisphaerica)
TTGAGACTCAATATGGAAGAGAATGGATACCATTTTATCCAGAGAACCAA
TGGAAGCACTATCAGTGAAACTTTCACTTTCCCACCATTCAAAATAAAGC
CTGGATACGCAAAAAGAGACTTTACAGAACCGTACAGAATCATCTATATA
GTGATTTGTTCGATACTCGCTCTAATATCAATCGTTGGGAATATCACGCT
GGTCACTGTTATATCTTCGAGACATAAATTGAGGACCGCTACAAATTTAT
TGCTCCTAAGCTTGGCTACAGCTGATTTATTAACGTCAGTAGTTTATACG
CCCTTATACCTTGAACGCTTTTACAATCAAAATGCAAACAATTCGCATCC
GAAACTATGTTTGTTacggaaatatttttttattgttacaGCTTCAGGAT
CGTTGATAAGTTTAGCTGTGGTGAGCTTTGACCGTATGTTTGCTATAGCC
TACCCGTATAAATATGAGAGATGGATGACGAAAAGATTGGCTTGTATTGT
TATCTGCATCGTCTGGTTCTGGACTATTTGCTTCAATTCAATCACTTTTC
ATGACTTCTTACATTGGGGACGTATTTTATCAACATGTGTTGGAGGCATA
CCGAGAAAACTTTTTCTTATCATAGGCCCTCCAGGGTTTTATATACCTGG
AATTACAATCGTGGTAGTGTATATCAAGATTTATTTGGTTGCTAGGAAAC
TGAATATAAAAGTTGAACATGACTGCAAACTATCTGTTTCCTCGAATGAG
ATCTTAATGACTGATTTATCAAATTCGAGTAATCACTTGTATTTGACTCC
ACCACTTTCCCAAAAAAAGCTTGGAATCAGAAGGACTTCTTCTTTACCTG
TTATCAAAGCTTTTACCGGAGATATCAACAATAGCACGCGTGATGCTAAC
AAAACTTCACTTCCTTTTCTCATGAGTCATACGCTGAGCACTCCAACCTT
GAAGCCACGCTCTTCTTCAACTCTGATAAGTCAAACATTGCACGGAGGAA
AGGAGACTATTCGCAAGGTTAAGAAATCGATCAAACGAGACATTCGGACT
GTGAGAACGATAGCAATGCTAGTCGGATTCTTTCTAGTCTGTTGGATGCC
GACCGCTGGTTTTTACATTTACATCAACATTATGGGGTCTAGCGGAACAT
CTGTCAGCCAACAAGTTTTGCTTTGTTACGAGATATTCATGGTATTGACT
TTTGTTAATAGTGCGCTGAATCCGTTTCTTTACACTTATCGGAATAAAGA
ACTTCGGAAAGAAACTATGaaatttgccagaaaacttTTTAGGATTGGCC
gttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014469-exon-sc0000187-1491911889:452765..454228 | TCONS_00014469-exon-sc0000187-1491911889:452765..454228 | Clytia hemisphaerica | exon |
| TCONS_00014469-exon-sc0000187-1510915933:452765..454228 | TCONS_00014469-exon-sc0000187-1510915933:452765..454228 | Clytia hemisphaerica | exon |
| TCONS_00014469-exon-sc0000187-1575043694:452765..454228 | TCONS_00014469-exon-sc0000187-1575043694:452765..454228 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:452765..454228 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
