TCONS_00014438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014438
Unique NameTCONS_00014438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014438 ID=TCONS_00014438|Name=TCONS_00014438|organism=Clytia hemisphaerica|type=transcript|length=1435bp
agcttgttcttataaaaaaccgtgtaGCGACACATACTTCGTCATTATCG
TGCAGTCAAATTTTAGAAAGAAGCACGAGAAAATTCTTCCTATTAACAAg
tctatttaaagaaattttgagaaaaagccCTACATCACAAAATTACATAA
CACTCACATAATACTTTCCAAAATTATAGTTTTTTTCTAGAAAGGTGTTT
ACCTCATAATGAAGGGCGGGTGACCCTTGAGTGCACGATTTAGCCTTTCA
TCTTAAAAGATAACAAATTTCTTGTGCACGCTTTTAGGTTTATGGCTAGA
AAATCTTGAACAGTTAATGAGAGCACGATTTTAGCATTTCGTCCTAAAAA
TAACAAACGTAGCCTTAAAGCTATAATGGCTTAATTGTTTCGAGCCTAAA
AAGACTTCCGCTTTTTCCAAGCAAATACAGAAAGGTACAATTACATAAAC
GTCATCATCCTCAAACAAAGGATttaaaatattactttttttaGTCAAGA
CATTTTATTCCCCCATAAGAAGGCAATTGCCAATTCACAAGCATGTCTTG
GATGTCCAGCCAACACCAAGGAACTTTGATAAAAGCAATtttatttcgaa
tttttggTCTGGCAGTCAATATCTAATTGACTGTATAAACGTTCAACTTC
GTTCAAGTTGGGAGTTAGGATGCTTGCACCTGCACACATGTGAGTTTTGT
TTTTGCGTCATTTGGACATAagatggtttgtttttttttcaggtcaACAA
ACCTTTGGACtagtccgaaaaaaattgacacaaacTGTTTGGCCAACAAG
AAAAATGACCAGTTTGAAGTCTGAAAAAGGTTCGTGTTGTAGAACAACGT
TCATCTTTTAATAGATTTACTTCTTTTATCCTCAGAACCTTTTCCTCTTT
GATCCccaggggataaaaattccaattgaaatctcaatggggatagaaat
tctattgttccaagattaaaaaatccagtgcgGATAATTTCGGAgagcaa
tttttaaacattgaatttcgaatgggggtgaaatcaaagtcaatttccca
gtggggctgaaattatagggtatttttccaccgggacgagatttttgcca
agttttcgggtctgtgatacaggggtgtattgcGCTAGGAAAGAATATTC
ACTCCCTAATGAAGAGTAAAGAAACTACTTGATAGCACCAAATAAAGATA
TTGTTTTGGGGATCGTCGGGAAATTTCAATTCTATAACAGGAAACAATGT
TGTAGGCCCTGATCTGTGACTCGTGAGCCCGGGGCGGGGCACTTTGGCAA
ACctgggtacggggacgtgccactgGTAAGGGTTCTTTTTTAGGctctct
gaagatatctgacagggtcccaaattgaCTAATTTACAAAATATGTATCC
GACCAGGGTCtacttttggtaatttttggaAATTC
Run BLAST on NCBI

transcript from alignment at sc0000187:281956..283390-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014438 ID=TCONS_00014438|Name=TCONS_00014438|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at sc0000187:281956..283390- (Clytia hemisphaerica)
AGCTTGTTCTTATAAAAAACCGTGTAGCGACACATACTTCGTCATTATCG
TGCAGTCAAATTTTAGAAAGAAGCACGAGAAAATTCTTCCTATTAACAAG
TCTATTTAAAGAAATTTTGAGAAAAAGCCCTACATCACAAAATTACATAA
CACTCACATAATACTTTCCAAAATTATAGTTTTTTTCTAGAAAGGTGTTT
ACCTCATAATGAAGGGCGGGTGACCCTTGAGTGCACGATTTAGCCTTTCA
TCTTAAAAGATAACAAATTTCTTGTGCACGCTTTTAGGTTTATGGCTAGA
AAATCTTGAACAGTTAATGAGAGCACGATTTTAGCATTTCGTCCTAAAAA
TAACAAACGTAGCCTTAAAGCTATAATGGCTTAATTGTTTCGAGCCTAAA
AAGACTTCCGCTTTTTCCAAGCAAATACAGAAAGGTACAATTACATAAAC
GTCATCATCCTCAAACAAAGGATTTAAAATATTACTTTTTTTAGTCAAGA
CATTTTATTCCCCCATAAGAAGGCAATTGCCAATTCACAAGCATGTCTTG
GATGTCCAGCCAACACCAAGGAACTTTGATAAAAGCAATTTTATTTCGAA
TTTTTGGTCTGGCAGTCAATATCTAATTGACTGTATAAACGTTCAACTTC
GTTCAAGTTGGGAGTTAGGATGCTTGCACCTGCACACATGTGAGTTTTGT
TTTTGCGTCATTTGGACATAAGATGGTTTGTTTTTTTTTCAGGTCAACAA
ACCTTTGGACTAGTCCGAAAAAAATTGACACAAACTGTTTGGCCAACAAG
AAAAATGACCAGTTTGAAGTCTGAAAAAGGTTCGTGTTGTAGAACAACGT
TCATCTTTTAATAGATTTACTTCTTTTATCCTCAGAACCTTTTCCTCTTT
GATCCCCAGGGGATAAAAATTCCAATTGAAATCTCAATGGGGATAGAAAT
TCTATTGTTCCAAGATTAAAAAATCCAGTGCGGATAATTTCGGAGAGCAA
TTTTTAAACATTGAATTTCGAATGGGGGTGAAATCAAAGTCAATTTCCCA
GTGGGGCTGAAATTATAGGGTATTTTTCCACCGGGACGAGATTTTTGCCA
AGTTTTCGGGTCTGTGATACAGGGGTGTATTGCGCTAGGAAAGAATATTC
ACTCCCTAATGAAGAGTAAAGAAACTACTTGATAGCACCAAATAAAGATA
TTGTTTTGGGGATCGTCGGGAAATTTCAATTCTATAACAGGAAACAATGT
TGTAGGCCCTGATCTGTGACTCGTGAGCCCGGGGCGGGGCACTTTGGCAA
ACCTGGGTACGGGGACGTGCCACTGGTAAGGGTTCTTTTTTAGGCTCTCT
GAAGATATCTGACAGGGTCCCAAATTGACTAATTTACAAAATATGTATCC
GACCAGGGTCTACTTTTGGTAATTTTTGGAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008065XLOC_008065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014438-exon-sc0000187-1575043694:281956..283390TCONS_00014438-exon-sc0000187-1575043694:281956..283390Clytia hemisphaericaexon
TCONS_00014438-exon-sc0000187-1510915933:281956..283390TCONS_00014438-exon-sc0000187-1510915933:281956..283390Clytia hemisphaericaexon
TCONS_00014438-exon-sc0000187-1491911889:281956..283390TCONS_00014438-exon-sc0000187-1491911889:281956..283390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:281956..283390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02485	0.674565	2.32307	2.18509	0.0780485	0	0.0381044	0.0701904	0.125589	0.0930775	0	0.0406826	0.0962281	0.231018	0.180771	0.158705	0.336467	0.731475	0	0.102483	0.114492	0.0861	0.0995385	0.0885456	0.16427	0.2079	0.0793589	0	0.101131	0.0500867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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