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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014405 ID=TCONS_00014405|Name=TCONS_00014405|organism=Clytia hemisphaerica|type=transcript|length=975bp
cttggggttttctacaaactgtgaaaaggaaaaattcacgcgttcacgca
aaaaacagggcagattcacgcattcacgcaatagaaatatggattttcac
gttcacgcaagttttttcaattcacgcattcacgcaattttttttcaaat
ttcacgcattcacgcaaccaaaaaagcccattcacgcattcacgcaaacc
gctggggggggcccaACCAAGAcagtaaaaaatgaaacttcttTGCCTGG
CAATACTTTGTTTTTTCATATCAACTGCAAAAGCTGACCAAAATGCAAAC
GAATTATCACGTGACGGTGAACTTGAGTCCAGATTGAGATTCGAAAATGT
CGAAGATCCCATCACAAACGTGGACAAAGAAGATCAGgaagaagatttca
aaaatgatgataaagaaaatgaagaagaagaaaatgatgatGATAGTGAT
AATAGTGATgagaatgaagaagaaaatgaagaagacgcAGATAAGGATGA
CGATGACGATGACAAAATAAATGATCACGAGGTTCAGCTTGCCGATCCGG
ATAATTCCCTTAAAGTTCAAAAAGACCCCTCCGTCGGAAGATTGCTCGTA
CATGGGGCGAGAACTGCCTTGAAGTTTCGCCGTGCTACTGGTTTCCGAGT
ACGTCGAACCGTCCGTCGAGTTCGACGTGCGTTTAGAAGGTCTCGACGTG
GAGGACGTCGATCCAGACGTAACAGAAGAGGTGGACGTCGTGGAGGTAGA
AGAGGACGCCGTGGTGGAAGACGTGGACGCAGAGGTCGACGTGGACGTGG
ACGGGGAAGACGTGGAAGACGATGGGGATAATCTTgagacttgaagaaaa
attttactacGGCTGAATATGATTATTGATTCATACTAgggttttatatt
tttattttatatgataattcttttttgtttgctctgttagcctatttcat
aggattcatgCATATGTTACATGCT Run BLAST on NCBI protein sequence of TCONS_00014405-protein >TCONS_00014405-protein ID=TCONS_00014405-protein|Name=TCONS_00014405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MKLLCLAILCFFISTAKADQNANELSRDGELESRLRFENVEDPITNVDKE
DQEEDFKNDDKENEEEENDDDSDNSDENEEENEEDADKDDDDDDKINDHE
VQLADPDNSLKVQKDPSVGRLLVHGARTALKFRRATGFRVRRTVRRVRRA
FRRSRRGGRRSRRNRRGGRRGGRRGRRGGRRGRRGRRGRGRGRRGRRWG Run BLAST on NCBI transcript from alignment at sc0000187:471949..474144+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014405 ID=TCONS_00014405|Name=TCONS_00014405|organism=Clytia hemisphaerica|type=transcript|length=2196bp|location=Sequence derived from alignment at sc0000187:471949..474144+ (Clytia hemisphaerica)
cttggggttttctacaaactgtgaaaaggaaaaattcacgcgttcacgca
aaaaacagggcagattcacgcattcacgcaatagaaatatggattttcac
gttcacgcaagttttttcaattcacgcattcacgcaattttttttcaaat
ttcacgcattcacgcaaccaaaaaagcccattcacgcattcacgcaaacc
gctggggggggcccaACCAAGAcagtaaaaaatgaaacttcttTGCCTGG
CAATACTTTGTTTTTTCATATCAACTGCAAAAGGTATtccttattttatt
ttttctctccTATAGGCGATATCAATTgtattagttgttttacgggccca
accgaccctgaaattccaaaaatcgaaataaaaataagattgctttacag
actgtcaaagttttggtagtttttgagaactttatgttcaatttttcatt
ttatccttGAACTCGAACTTTCTGTGTCTTTTTActttctatttcgcatt
tttgttgttgtttgtgctacctttttaggagattttattgGTCAAATTCT
ACTTTTGTCTTTATTCTTTCGCCGACCGACTGACCATCTTTATCGGgaag
cttggcccgtaaaacaacaaattaatttggcCTCGCCTAACCAACAATAA
ACTGAGATTTGCAGTTTAATCTGTCTTTTACGttgctttcaagaaaaatt
GCGATTGTTAGTCAAATACGTCAAATTTAAATTCACGAAATCCGGAAGAT
TAGGTCTGCTGCTCCTATCTCCActttaacaaaatttatatttcaaaacc
aTGATTTGTTTTACATAGCTGACCAAAATGCAAACGAATTATCACGTGAC
GGTGAACTTGAGTCCAGATTGAGATTCGAAAATGTCGAAGATCCCATCAC
AAACGTGGACAAAGAAGATCAGgaagaagatttcaaaaatgatgataaag
aaaatgaagaagaagaaaatgatgatGATAGTGATAATAGTGATgagaat
gaagaagaaaatgaagaagacgcAGATAAGGATGACGATGACGATGACAA
AATAAATGATCACGAGGTTCAGCTTGCCGATCCGGATAATTCCCTTAAAG
GTAAGAAAATAAAGCTTTCAAGGGAAGGTTATTGTCAAATAGGTGCGCGA
TTATCATTTACAATGGTTATTTcatcgtttttcgaaatttgcaATTCGAG
CAAGAAAGTCACTTTCGGACTTTGCTAAATGTAATTAAATGTAATCGAGG
CCTATATTCTGAGACCTGTTGAACTATTTATGAGTCCTAAGGCTAAGGTT
AAAACTCATAGTTAAACTTTACCTTTCTTACCTAAGTTAGAGTGCTTCTA
GAACATTTTTGGCTAAAAGATTTTGTgtcaatttcccttttttctcaagt
CTTACGACTTTGATTGTAGTTAGTAGAAAGGGATCAATACATAATTCTGT
TTATAAActttttgaagtcttcggatTATTCTTTAATTTTGGGGTTTTAT
GTCTTGCTgagcaaatatttttttttggaatgcTCCTATGTTTAGTAAAA
TCTAAGCAAATTGTTCGTTTTAGAGTCTACAAAACCTCTGAAATGTTCCT
AGAATGTTCTGAATTCATTTTTTCCGTGAggcttttgttcttatatactt
tttgctttaaaaacgGTAGCTTGAAAGTAAAATTAGGATCAATGAACAGC
AAAGTGTAAAACCAAATTGCAACAGTAACTACTACAACCAAATAACATAT
TATATAGAAATTTATATCATCTCCTCTCCTTACCAGTTCAAAAAGACCCC
TCCGTCGGAAGATTGCTCGTACATGGGGCGAGAACTGCCTTGAAGTTTCG
CCGTGCTACTGGTTTCCGAGTACGTCGAACCGTCCGTCGAGTTCGACGTG
CGTTTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGTAACAGAAGA
GGTGGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGGACG
CAGAGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGAT
AATCTTgagacttgaagaaaaattttactacGGCTGAATATGATTATTGA
TTCATACTAgggttttatatttttattttatatgataattcttttttgtt
tgctctgttagcctatttcataggattcatgCATATGTTACATGCT Coding sequence (CDS) from alignment at sc0000187:471949..474144+ >TCONS_00014405 ID=TCONS_00014405|Name=TCONS_00014405|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000187:471949..474144+ (Clytia hemisphaerica)
atgaaacttcttTGCCTGGCAATACTTTGTTTTTTCATATCAACTGCAAA
AGCTGACCAAAATGCAAACGAATTATCACGTGACGGTGAACTTGAGTCCA
GATTGAGATTCGAAAATGTCGAAGATCCCATCACAAACGTGGACAAAGAA
GATCAGgaagaagatttcaaaaatgatgataaagaaaatgaagaagaaga
aaatgatgatGATAGTGATAATAGTGATgagaatgaagaagaaaatgaag
aagacgcAGATAAGGATGACGATGACGATGACAAAATAAATGATCACGAG
GTTCAGCTTGCCGATCCGGATAATTCCCTTAAAGTTCAAAAAGACCCCTC
CGTCGGAAGATTGCTCGTACATGGGGCGAGAACTGCCTTGAAGTTTCGCC
GTGCTACTGGTTTCCGAGTACGTCGAACCGTCCGTCGAGTTCGACGTGCG
TTTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGTAACAGAAGAGG
TGGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGGACGCA
GAGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGATAA
atgaaacttcttTGCCTGGCAATACTTTGTTTTTTCATATCAACTGCAAA
AGCTGACCAAAATGCAAACGAATTATCACGTGACGGTGAACTTGAGTCCA
GATTGAGATTCGAAAATGTCGAAGATCCCATCACAAACGTGGACAAAGAA
GATCAGgaagaagatttcaaaaatgatgataaagaaaatgaagaagaaga
aaatgatgatGATAGTGATAATAGTGATgagaatgaagaagaaaatgaag
aagacgcAGATAAGGATGACGATGACGATGACAAAATAAATGATCACGAG
GTTCAGCTTGCCGATCCGGATAATTCCCTTAAAGTTCAAAAAGACCCCTC
CGTCGGAAGATTGCTCGTACATGGGGCGAGAACTGCCTTGAAGTTTCGCC
GTGCTACTGGTTTCCGAGTACGTCGAACCGTCCGTCGAGTTCGACGTGCG
TTTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGTAACAGAAGAGG
TGGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGGACGCA
GAGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGATAA
atgaaacttcttTGCCTGGCAATACTTTGTTTTTTCATATCAACTGCAAA
AGCTGACCAAAATGCAAACGAATTATCACGTGACGGTGAACTTGAGTCCA
GATTGAGATTCGAAAATGTCGAAGATCCCATCACAAACGTGGACAAAGAA
GATCAGgaagaagatttcaaaaatgatgataaagaaaatgaagaagaaga
aaatgatgatGATAGTGATAATAGTGATgagaatgaagaagaaaatgaag
aagacgcAGATAAGGATGACGATGACGATGACAAAATAAATGATCACGAG
GTTCAGCTTGCCGATCCGGATAATTCCCTTAAAGTTCAAAAAGACCCCTC
CGTCGGAAGATTGCTCGTACATGGGGCGAGAACTGCCTTGAAGTTTCGCC
GTGCTACTGGTTTCCGAGTACGTCGAACCGTCCGTCGAGTTCGACGTGCG
TTTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGTAACAGAAGAGG
TGGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGGACGCA
GAGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014405-exon-sc0000187-1491911889:471949..472231 | TCONS_00014405-exon-sc0000187-1491911889:471949..472231 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1510915933:471949..472231 | TCONS_00014405-exon-sc0000187-1510915933:471949..472231 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1575043694:471949..472231 | TCONS_00014405-exon-sc0000187-1575043694:471949..472231 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1491911889:472767..473048 | TCONS_00014405-exon-sc0000187-1491911889:472767..473048 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1510915933:472767..473048 | TCONS_00014405-exon-sc0000187-1510915933:472767..473048 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1575043694:472767..473048 | TCONS_00014405-exon-sc0000187-1575043694:472767..473048 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1491911889:473735..474144 | TCONS_00014405-exon-sc0000187-1491911889:473735..474144 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1510915933:473735..474144 | TCONS_00014405-exon-sc0000187-1510915933:473735..474144 | Clytia hemisphaerica | exon |
| TCONS_00014405-exon-sc0000187-1575043694:473735..474144 | TCONS_00014405-exon-sc0000187-1575043694:473735..474144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:471949..474144 + |
Blast
The following BLAST results are available for this feature:
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