TCONS_00014339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014339
Unique NameTCONS_00014339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014339 ID=TCONS_00014339|Name=TCONS_00014339|organism=Clytia hemisphaerica|type=transcript|length=850bp
TGAATATCAATCTCGACGAAAGTTTTGGTAGTTTTCCATGCACATAAATC
TCATCAAGGATGTAATCAATAGTTTCTCTAACAGGGACGTTGGTGAAAAG
ACTCTCCACATCGTAGGAAACATACTCCTCATCGTGTTGTAACGGTGGTT
GATTTTTCAGCATGGTTGGAAACTTCTGGGTGTTATTGATCATGTACTCA
TTTTCAGATAACAGTGGTTGCAGATATTTAGCAATTATTTGGGCAGCCTT
GTATGTGCAGGTCCCTACTTGAGCTATTATAGGTCGAAACTTCAAGTTCC
TCACGTCGATATTGTTGATATTGTTGAATTTGTGTGTTTTTGCCAAACCA
TATAACTGAGCTGGCTGGTTTGCTGTTGGTATCATATCTTTGTAGTGTTC
GTATTTATTAAAGTTCCTGTagagaaaatctttaaaaattttcaggtcAT
GGAGCGTTGTATCTTCCGCTTGCTTGTATATCCCGTTGTTAATTCCATCG
TCGATCATACCCTGTAATTTATTGATATAATCTAACCTGTTCATGACTAT
TACACATGATTCTTTGTCACCTGGCACTACTACTAAGTTCTCATTGTTAA
TTAGCCGTTTCAGATTGAAATAGGTATAATCTTTTGTAGCGAAAACATTT
TTCGTGAAGATGTGGGTGTACGATCGTAAGAATTCatgaaagttttcttt
ctcGTCAGGACTGATTGATTTATCAACAGTTTCAGCAACTTTAGAGAGTA
ATGATAATAGTCATGTATTTAACTGGAAGGTTCTAATTTCGGCACCACTT
AAGAGcaaagaaaggaaaaacttAGAGGCTTTCCAAATCGCATTGAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00014339-protein

>TCONS_00014339-protein ID=TCONS_00014339-protein|Name=TCONS_00014339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MNRLDYINKLQGMIDDGINNGIYKQAEDTTLHDLKIFKDFLYRNFNKYEH
YKDMIPTANQPAQLYGLAKTHKFNNINNIDVRNLKFRPIIAQVGTCTYKA
AQIIAKYLQPLLSENEYMINNTQKFPTMLKNQPPLQHDEEYVSYDVESLF
TNVPVRETIDYILDEIYVHGKLPKLSSRLIF
Run BLAST on NCBI

transcript from alignment at sc0000185:64456..65305

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014339 ID=TCONS_00014339|Name=TCONS_00014339|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000185:64456..65305 (Clytia hemisphaerica)
TTTTTCAATGCGATTTGGAAAGCCTCTaagtttttcctttctttgCTCTT
AAGTGGTGCCGAAATTAGAACCTTCCAGTTAAATACATGACTATTATCAT
TACTCTCTAAAGTTGCTGAAACTGTTGATAAATCAATCAGTCCTGACgag
aaagaaaactttcatGAATTCTTACGATCGTACACCCACATCTTCACGAA
AAATGTTTTCGCTACAAAAGATTATACCTATTTCAATCTGAAACGGCTAA
TTAACAATGAGAACTTAGTAGTAGTGCCAGGTGACAAAGAATCATGTGTA
ATAGTCATGAACAGGTTAGATTATATCAATAAATTACAGGGTATGATCGA
CGATGGAATTAACAACGGGATATACAAGCAAGCGGAAGATACAACGCTCC
ATgacctgaaaatttttaaagattttctctACAGGAACTTTAATAAATAC
GAACACTACAAAGATATGATACCAACAGCAAACCAGCCAGCTCAGTTATA
TGGTTTGGCAAAAACACACAAATTCAACAATATCAACAATATCGACGTGA
GGAACTTGAAGTTTCGACCTATAATAGCTCAAGTAGGGACCTGCACATAC
AAGGCTGCCCAAATAATTGCTAAATATCTGCAACCACTGTTATCTGAAAA
TGAGTACATGATCAATAACACCCAGAAGTTTCCAACCATGCTGAAAAATC
AACCACCGTTACAACACGATGAGGAGTATGTTTCCTACGATGTGGAGAGT
CTTTTCACCAACGTCCCTGTTAGAGAAACTATTGATTACATCCTTGATGA
GATTTATGTGCATGGAAAACTACCAAAACTTTCGTCGAGATTGATATTCA

Coding sequence (CDS) from alignment at sc0000185:64456..65305

>TCONS_00014339 ID=TCONS_00014339|Name=TCONS_00014339|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000185:64456..65305 (Clytia hemisphaerica)
ATGAACAGGTTAGATTATATCAATAAATTACAGGGTATGATCGACGATGG
AATTAACAACGGGATATACAAGCAAGCGGAAGATACAACGCTCCATgacc
tgaaaatttttaaagattttctctACAGGAACTTTAATAAATACGAACAC
TACAAAGATATGATACCAACAGCAAACCAGCCAGCTCAGTTATATGGTTT
GGCAAAAACACACAAATTCAACAATATCAACAATATCGACGTGAGGAACT
TGAAGTTTCGACCTATAATAGCTCAAGTAGGGACCTGCACATACAAGGCT
GCCCAAATAATTGCTAAATATCTGCAACCACTGTTATCTGAAAATGAGTA
CATGATCAATAACACCCAGAAGTTTCCAACCATGCTGAAAAATCAACCAC
CGTTACAACACGATGAGGAGTATGTTTCCTACGATGTGGAGAGTCTTTTC
ACCAACGTCCCTGTTAGAGAAACTATTGATTACATCCTTGATGAGATTTA
TGTGCATGGAAAACTACCAAAACTTTCGTCGAGATTGATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008019XLOC_008019Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014339-proteinTCONS_00014339-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014339-exon-sc0000185-1491911889:64456..65305TCONS_00014339-exon-sc0000185-1491911889:64456..65305Clytia hemisphaericaexon
TCONS_00014339-exon-sc0000185-1510915933:64456..65305TCONS_00014339-exon-sc0000185-1510915933:64456..65305Clytia hemisphaericaexon
TCONS_00014339-exon-sc0000185-1575043694:64456..65305TCONS_00014339-exon-sc0000185-1575043694:64456..65305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:64456..65305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0553475	0.377808	0.564005	0.490481	0.671753	0.353885	0.35579	0.199852	0.139921	0.4044	0.168223	0.258028	0.184049	0.420502	0	0.0674544	0	0.0851731	0.176507	0.0615672	0.0535131	0	0.126921	0	0.237697	0.848554	0.30357	0.0809944	0.122863	0.0625889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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