TCONS_00014319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014319
Unique NameTCONS_00014319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014319 ID=TCONS_00014319|Name=TCONS_00014319|organism=Clytia hemisphaerica|type=transcript|length=450bp
AAGTATAATATCGACTTTCCGGTCAAACGAACACGCCCATCACCACGCCA
ACCGAATTATCTTCGCGATTCGTACGACATCAAACAACTTCGAAACCATG
CGACATCAAACACTTTGAATCAATATACTTTAGAAGTAGATTCCCAACCA
AGATGTAGAACAATTACCATGGAATATTCCCTGCAATATCATCCTAGACT
GCCCGACATCAGTGCTAGTCTTGAACTAACGGGCGAGGAACAAGGTTTTC
TACCTGAAAATAAGaaCATTGTACTGTTACCTCCATCCAACTTCTCCTGA
GATTGTCGACGCCAATTCTTCAAGGTTTGTTGAATTTATCAAGATCGCTC
ACCGTTATCTCCAAATTATTCAAAGCAGTACTGGTAGCTGTTTTGTTAAT
TAACTTAAATTGCTTTAATTGTGTACTTTTCAACCAGCCATTTCGAAAca
Run BLAST on NCBI

protein sequence of TCONS_00014319-protein

>TCONS_00014319-protein ID=TCONS_00014319-protein|Name=TCONS_00014319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
KYNIDFPVKRTRPSPRQPNYLRDSYDIKQLRNHATSNTLNQYTLEVDSQP
RCRTITMEYSLQYHPRLPDISASLELTGEEQGFLPENKNIVLLPPSNFS
Run BLAST on NCBI

transcript from alignment at sc0000185:284610..287637-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014319 ID=TCONS_00014319|Name=TCONS_00014319|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at sc0000185:284610..287637- (Clytia hemisphaerica)
AAGTATAATATCGACTTTCCGGTCAAACGAACACGCCCATCACCACGCCA
ACCGAATTATCTTCGCGATTCGTACGACATCAAACAACTTCGAAACCATG
CGACATCAAACACTTTGAATCAATATACTTTAGAAGTAGATTCCCAACCA
AGATGTAGAACAATTACCATGGAATATTCCCTGCAATATCATCCTAGACT
GCCCGACATCAGTGCTAGTCTTGAACTAACGGGCGAGGAACAAGGTTTTC
TACCTGAAAATAAGGTACAAAACTTCTGAAAAGTTCATTATAAGCAGTTA
TAAGTAATAATTGAATTATCATAGGGTAAACAAAGGGTTAACTAAAACAA
TTGCTATCATTGGGAAATCTTAAAATTTCGCGGCTAAGCTCAACTGCAAA
ATTTAATCTCCGCGAAATGTTATCCCATTAAAATTATGGCCATTTAAATT
TCTAGATCCTGTGAGATCTGATAATGTTGTAGAAACATCGTTTTGGGGAT
TATCTTTCCCAGCCGCATTTTTTTAAGCTTTCTAACAAAGGCAGTTGAAC
CACATCAAAGGACGATTACCTTTCTGTCGGATTGGAAATTGGCCGGTCCT
TTAGAGCAGTAACTATATTACAATCAGTATCGTACTATCTTAATATGTAG
TATACAGTGCTGACTAGTCCTAATAAAGATGAAAAGCATTATGCTGCTCT
GCCACCCAAATCTCCTGAGTGAAAGTAGTTGTTTAATTCTTGATTTCTTC
ACATATTTTTTTTATTTATAGAACATTGTACTGTTACCTCCATCCAACTT
CTCCTGGTAAGCATTTTTTGGTTAAAAAAATTCATCCCATACTAGAAAAG
ATTCCATACAATACAGAGCAAAAATTATTGCATTTTGGACAGCATTTTTT
AATTCATTTTTCTATTTTTCTATGGTATGCATCACTGCAATGTCTTCGAC
ATCACACCATAGAGCGAACAGCTGATTGGTTGTAAGTGACTTAAAATCAG
TCAATACGTCACTTGCAGCCAATCATCTGTTGGGTCCGTGATGTAATGTT
GGAAGACATTCCAATGGTGCATATCATGAATATTCACAGTACTGCTGCTA
CTTTGAGAGTCCTGAAGTCTGATTTTGCCCCTTTTTTTCAGGTATAGAGG
AAAATGAAAAATTTGAAATTCGGTGGGGGGAAATAAAAAGGGGGAAAACC
ATAAATCTTGGAAATTTTGATTGGGGAACTTCACTCATCTCAAGGTAATC
TTTTAGGAGACCTGTTTAAGCAATAAAATCAACAAACCTTACTTGAACCA
AACCAATTATTTAATAAAACATTTTCAAGCAATTTCAAGGCTATATAAAG
GCTATATAAACTTGATTTAAGGCATTTTTATGTTAACCATATGGAGGAAC
CGCAAAATCATCGAAACTGGGGGAAGGCAAAAAAAGAGGGGGGACCGAAA
ATTTTTTAATTATGGTGGGGGATAAAAAAGTGTGGGGGGGGATAACCTGG
AACTACTGATTTTATTCCACTTTGTTTGATCCACAAGTAAATAAAAAATG
TATTTCACTGACCCCCTCTCCCTCATTCTCAATGTTGAGAAAATAACGTT
GAGTCGTTCAATTCAATCCTTCAAATAGGGGAGAAAAAAATTAAAATGGT
ATTTCTATACATATCTGGGAGAAATTTACTACTGGGGCTAGCCAGTGTTG
CACCTATTTAGTCAGATATCAAGAAATAAAGAACTAACTTACAATTGCTA
CACGGTGTTTCATGCTGTTTCATCTTCTGGCAAAGCAGTGTTATTGTTGA
TTTTATTTCCATTGAAATAAAGAAGATTGCGCCAGCATGAAAAGCACCGT
GTAGCAATTGTAAGTTAGTTCTTTATTACTTGATATTTCGCTCGATATTT
TTTTCGAATTTTCTTCGAATTTTCTTGAGCACTGTGTGAGTCTTATTTTC
ACCACTGTACTTATTCAGATAGATAGAAGTATTAGAAATTTTTCAGATTC
ATTGCCCCGCAGGGGCTTTTGTTGCTTCACGTAGTGGGCTTGTTCGCCAG
AAAAATATTCATGTTCATGTTCACGATGTTGTTTCTTTCGATTCTGAGCG
GGCCGCTGCGGTTAAAGAATGCTCGCGCGGACCTATCGTTTTATCTATTT
TGTTGCGAATTGTATTGATTCTAAGCACCTACTTTATAAGAATCAAATCA
ATAACTCTTGATAAACAGCCACATATCTTTCGGTAATTAGTTCTTACAAA
GTAAACGATGGATGGCGCATAATATGAGCATATTTATTTTTATTATAAGC
ATCTAGTTTATAAGATTCGGATCAATAACTCTTGAACAACAGCTTTATAC
CTTTTGGTAATTAGTTCTTATAAAGTAAACAAGGGACGGCGCATAATATG
AGGTTATTTATTTTTCTTATAAGCATATACTTTATAAGAATCAAATCAAT
AACTCTTGATAAACAGCCATATACTTTTTGGTAATTAGTTCCTACGAAGT
TAACGGAGATATCAAGATATTTTACTGTGTGCGCTAAGCTGTACACCACG
TTTCTTTTTTGTCAGCCAATCAGAGAGAAGAAAAACATTTGACTTCGGTG
TATTTTTCTCTTGTGTAAAAATATTTTCGATATTGTGCTGCTCACAATGG
TTTCAAAGGAACGAGACAAGCGCTCAGCGAATAGAAATTTGTAGCTGTGC
GCTTATTGGATGGCGCTCCAATGAAACGATCTGGTGGAATGCGACCTTCA
AACGTTCATTCTCGATTATGAATGCGTTCGCGGGGCATTCATAGTGACAG
CTATTTGCTAGTTTAAATGATATTTGTTATTTGTTACCCAAAATGGACAT
GTTATTTTGTTGTTTCATTTCTTTCAGAGATTGTCGACGCCAATTCTTCA
AGGTTTGTTGAATTTATCAAGATCGCTCACCGTTATCTCCAAATTATTCA
AAGCAGTACTGGTAGCTGTTTTGTTAATTAACTTAAATTGCTTTAATTGT
GTACTTTTCAACCAGCCATTTCGAAACA

Coding sequence (CDS) from alignment at sc0000185:284610..287637-

>TCONS_00014319 ID=TCONS_00014319|Name=TCONS_00014319|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000185:284610..287637- (Clytia hemisphaerica)
AAACATTGTACTGTTACCTCCATCCAACTTCTCCTGAAGTATAATATCGA
CTTTCCGGTCAAACGAACACGCCCATCACCACGCCAACCGAATTATCTTC
GCGATTCGTACGACATCAAACAACTTCGAAACCATGCGACATCAAACACT
TTGAATCAATATACTTTAGAAGTAGATTCCCAACCAAGATGTAGAACAAT
TACCATGGAATATTCCCTGCAATATCATCCTAGACTGCCCGACATCAGTG
CTAGTCTTGAACTAACGGGCGAGGAACAAGGTTTTCTACCTGAAAATAAG
AAACATTGTACTGTTACCTCCATCCAACTTCTCCTGAAGTATAATATCGA
CTTTCCGGTCAAACGAACACGCCCATCACCACGCCAACCGAATTATCTTC
GCGATTCGTACGACATCAAACAACTTCGAAACCATGCGACATCAAACACT
TTGAATCAATATACTTTAGAAGTAGATTCCCAACCAAGATGTAGAACAAT
TACCATGGAATATTCCCTGCAATATCATCCTAGACTGCCCGACATCAGTG
CTAGTCTTGAACTAACGGGCGAGGAACAAGGTTTTCTACCTGAAAATAAG
AAACATTGTACTGTTACCTCCATCCAACTTCTCCTGAAGTATAATATCGA
CTTTCCGGTCAAACGAACACGCCCATCACCACGCCAACCGAATTATCTTC
GCGATTCGTACGACATCAAACAACTTCGAAACCATGCGACATCAAACACT
TTGAATCAATATACTTTAGAAGTAGATTCCCAACCAAGATGTAGAACAAT
TACCATGGAATATTCCCTGCAATATCATCCTAGACTGCCCGACATCAGTG
CTAGTCTTGAACTAACGGGCGAGGAACAAGGTTTTCTACCTGAAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008005XLOC_008005Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014319-proteinTCONS_00014319-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014319-exon-sc0000185-1575043694:287374..287637TCONS_00014319-exon-sc0000185-1575043694:287374..287637Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1575043694:286832..286866TCONS_00014319-exon-sc0000185-1575043694:286832..286866Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1575043694:284610..284760TCONS_00014319-exon-sc0000185-1575043694:284610..284760Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1510915933:287374..287637TCONS_00014319-exon-sc0000185-1510915933:287374..287637Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1510915933:286832..286866TCONS_00014319-exon-sc0000185-1510915933:286832..286866Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1510915933:284610..284760TCONS_00014319-exon-sc0000185-1510915933:284610..284760Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1491911889:287374..287637TCONS_00014319-exon-sc0000185-1491911889:287374..287637Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1491911889:286832..286866TCONS_00014319-exon-sc0000185-1491911889:286832..286866Clytia hemisphaericaexon
TCONS_00014319-exon-sc0000185-1491911889:284610..284760TCONS_00014319-exon-sc0000185-1491911889:284610..284760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:284610..287637 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.15237	4.59371	4.50034	6.52279	3.37487	0.941247	2.83894	3.72089	3.34939	3.22681	1.64058	2.54908	2.15391	3.76199	2.25696	3.49853	2.65225	4.07771	0.938928	2.1288	1.70798	1.66618	1.85668	1.53453	2.3708	1.97483	1.41298	1.29255	1.79731	2.16412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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