TCONS_00014293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014293
Unique NameTCONS_00014293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014293 ID=TCONS_00014293|Name=TCONS_00014293|organism=Clytia hemisphaerica|type=transcript|length=3765bp
gTTTCATCAATGTTGAAGGTTTTGACACAGTTGATTTTTTGTGTTACTGT
GTGTGTAAAGTGTGTGCGACAgagagaaaaaggaaaaagagttcgaatta
ttttatgtgcgtgttgaatcgtaaaattttttttcggatcATAACATAAT
TTGACTGAGCTGTTGAAAGGTTTTATAACCGGATTGATTATTTCATCATA
GATAttacataaaaaaagaaaatattgaaaattgttgACAAATTATGGTA
TTATAGAAAACTTCTTGTGACCAAAAGactttttaacgatgaaatcgACA
ATGTTATTTATTTTGACGCTGGTCCCATTATTATTTTCGAACGTTGACTC
TAATTTGGTATATCTTTCACCGAATGTGACATGTCAAATCAAAACAAGTT
TATATTACAAGTTGTTGGATTGTTCGGATCGGAATTTGACAAAGATACCA
AACTTCAGACGCGTTCCATCTCTCGGacaacatgatattaatgaaatcac
tgaaatcaatttgaatTCAAATAAAATCAGAACGCTTGATTTACGACGGT
TAAACATATTCGGCAAATTAAATAAAGTTACGTTAGCTCGAAACAAAGTG
AAGAGGATCAACCTTAAAGAATCGAAACGTATCGCACAAATCGAGTTTCT
AAATCTTGACTATAATGAACTCACTGAAATACCCGACTCCATTCGATTGT
TTACGAATTTAAAAGAACTAAACATTCGATACAATCGATTCAAAACGGTA
CGAAATGACACTTTTCGAGGATTAAGCTTACTTCACACTTTGAACATTTT
CGATGAAAGAACGGAAGGATCAACTAATCATATCATCACACCCGAGATAG
GGGCGTTCCGCTATATGCCTAGTCTGCGCTCACTTGACTTCTTATCCCGT
GAACTCAAAATGGACCGATTCCCGGACTTAACGGGCACAAACAACCTTCG
TAAACTATACATCGCTAATATCGCCAACCTTAACATCCCTAAGACTTTCT
GTAGacaacaaaaatatcttcataCGATTGCTATATGGTATTGCGGTGGC
TCAGATGTGCCAAAACTCAACGAATGCAAAAGTTTAGAACGACTTGATCT
CAGCGAAAACCGATTTAATAAAATCGGGGAGAATCGAATTAGTGGATTAC
AAAAATTGGACACTTTCAGCATAAAGCAAGCAAGCTTTCACTGTCCGATC
CACCCTGATGCTTTTAACGATCTACCGAAACTTAAGAAATTGGATCTCTC
GCACTACGCCTTGACcaattttcttaacttaaaaAGAGCCCTTAGTCTTA
AAGAACTAAGTCTCGAAAACACACGATTACGTCAAATCCCAGCAACACTT
TGTTTAAATGCACCAGCTTTGGAAATCCTACATCTTCAAAATAACCGATT
TACAACATTGCCAAGTTTATCGAAATGCACGCATTTGTCTCGGTTGAACT
TAAATAGAAATCGTATCTCAGAACTGACGACACAATTCCGAAATCTCAAA
GATCTCTGGTTTGTGAGTCTAAAAGACAACTGGATTCGATACATCCCTGA
ATCAATTTTCAGCTCAAATCCAAAACTCGAATTCTTACACCTAAACCATA
ACTACATCCAAGAAATTCACCAAAATGCATTCGCCAACGCTACAAACCTT
CAATACCTTGACGTGTcaaacaatcttttaaaaagccTTCCCTCTAAAGG
TTTACAACGTTTAAAAGAAGTCCTTGCATTTGGTAATAAAGATATGATCC
AATTTCCAACGCAACAAGAGTTACCACACGCCCGTAAATTGAAATTAGAT
TACCACTACCATTGCTGTTTCTTCTTGCGACGCGTCCAACAAATCCATCA
TCGTTTCGAAATAACTGAAATGCAAGGTAAAAGTAAAGCTGACTACGAAT
TCCAGGATGAAGACGATGAAGACTATGAACGAGACGCGGCTTTGGTTAAA
AAATATACCAACCAAAGTGCAACACCTTTAAGTAGCTCTCATGATGGTGT
CGACCCCCTCCTCGTTAAATTTCTCCAAGAGCTGAACAACCATACTACCA
TTTATATCAAGAATCCAGAGCCAGATCAAGAAGAGAAACGAACAATATTG
ACCGACTTTTTTGATGGAGATGCTTACTGTACTCCAACACCGAATGATTT
CTATCCTTGTGAGGATCTGATGGGACGTGAATGGCTCCGCATCTGTGTCT
GGGTCGTCTTCTTGTTGGCTATCTTCGGAAACATCACAGtcctttttgtt
aatttttcgaactaCAGTAAACTTGATATCCCACGTTTTCTGGTCCTGAA
TTTAGCCATTGCCGATTTATTACTTGGAGTTTATTTGGGATTTCTGGCGT
TTGTTGATATCAAGACAATTGGAGATTTCCGCTCGCACGCACTCGATTGG
CAGTTCAGTGGGAGCTGTAAGCTGGCTGGCTTCATTGCCGTGTTTTCGAG
TGAGTTGTCTGTGTTCACACTGACTGCTATTACAATGGAACGTTTCCTAA
CCATCAAAAACTGTATGTATATTGAAAAACGTTTGACAAAGAATCAAGTA
TTTCTCATCATGGGTTTTGGTTGGTTATTTTGCTCACTCGTGGCCACACT
ACCTTTAATAAACATTGGTGATATCAAATTCAATGACTATACAAAATATA
GCGTGTGCCTACCCTTTGAAACTGAAACATTAGCCTCTAGAATCTACCTT
AGTTGTATTCTAGGGCTCAATTTGTTGGCGTTTACAATCATCCTTTATTG
TTACGTAAAGATTTATTTATTCATCCGTAACTCGCATGCGTGGAATTCAG
GTGATTCCCTGGTCGCACGTCGTGTCGGCATCTTAGTATTCACCGATTTC
TTATGTTGGTTCCCGATCGCATTAATCGCATTGTCAGCAGTTTTTGGAAA
CCCGTTCATCAAAGACTTGTGGGTCTCAAAAGTCATCACGATATTTGTTT
TCCCATTAAACGCATGCGCTAACCCGTTCTTATACGCTATCACCAAAAAA
CGTTTCCGTAAAGACATTATAACGGCAACGCGACGTTTAAAAGACAAAAT
GATGAATAAACAAGAAATACGTAAATCCTTATTAAAACTCCCAATCAAGG
GTAGTTTAACTTATTCAACGTCGGTACGACGAGAATCTTCGTGCTCGTTT
TTATTTAGTCGTCGGCATTCGGCTAAACAAGACAGTGAGTCGTCGAAACA
GTTTACTAGACAGACGACTCCATGTTTACCACCCTCATCTTTCCAACAAT
CTTTTGAGGAACCAGATGATGAAGACTATCAAGAGAGACTTACTACCGTA
TAATCTTTTCCTACGTATAAACTTTTTTTGTCATACTATATTCATGATGA
AAACCTTTTAAAGTTGCTaagttttttttgcattttcctaCGTTTTTTTA
GAATGCCATGGAGAGTTAATAGATTATCACTATCTTGTTatcaaaatgac
tttaaaaatggatataaaacCCAGATctgactttttgaaaatgttaaaca
TTTTAAAGACTGCAGAGCTTGTTTTGTGTATAATAGaggatatttttatt
tgtaTATATTGCTAAACTATATTATATAAAAGTATTTTATGTACTTAGAG
AtatattttattcaaagatTTCTAGCTGTCCTAGTAAAAACATTGATTGA
TTTTGTTTGAAAGCCTAAATGCTATAACAAACGATATTTTGCCGTAAATC
TAGGTGCTTCTGCGGATATTTCTCCTTTGAAAAGTATTTAGTGGAATTAT
TCAAGCTATGAGAGC
Run BLAST on NCBI

protein sequence of TCONS_00014293-protein

>TCONS_00014293-protein ID=TCONS_00014293-protein|Name=TCONS_00014293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1004bp
MKSTMLFILTLVPLLFSNVDSNLVYLSPNVTCQIKTSLYYKLLDCSDRNL
TKIPNFRRVPSLGQHDINEITEINLNSNKIRTLDLRRLNIFGKLNKVTLA
RNKVKRINLKESKRIAQIEFLNLDYNELTEIPDSIRLFTNLKELNIRYNR
FKTVRNDTFRGLSLLHTLNIFDERTEGSTNHIITPEIGAFRYMPSLRSLD
FLSRELKMDRFPDLTGTNNLRKLYIANIANLNIPKTFCRQQKYLHTIAIW
YCGGSDVPKLNECKSLERLDLSENRFNKIGENRISGLQKLDTFSIKQASF
HCPIHPDAFNDLPKLKKLDLSHYALTNFLNLKRALSLKELSLENTRLRQI
PATLCLNAPALEILHLQNNRFTTLPSLSKCTHLSRLNLNRNRISELTTQF
RNLKDLWFVSLKDNWIRYIPESIFSSNPKLEFLHLNHNYIQEIHQNAFAN
ATNLQYLDVSNNLLKSLPSKGLQRLKEVLAFGNKDMIQFPTQQELPHARK
LKLDYHYHCCFFLRRVQQIHHRFEITEMQGKSKADYEFQDEDDEDYERDA
ALVKKYTNQSATPLSSSHDGVDPLLVKFLQELNNHTTIYIKNPEPDQEEK
RTILTDFFDGDAYCTPTPNDFYPCEDLMGREWLRICVWVVFLLAIFGNIT
VLFVNFSNYSKLDIPRFLVLNLAIADLLLGVYLGFLAFVDIKTIGDFRSH
ALDWQFSGSCKLAGFIAVFSSELSVFTLTAITMERFLTIKNCMYIEKRLT
KNQVFLIMGFGWLFCSLVATLPLINIGDIKFNDYTKYSVCLPFETETLAS
RIYLSCILGLNLLAFTIILYCYVKIYLFIRNSHAWNSGDSLVARRVGILV
FTDFLCWFPIALIALSAVFGNPFIKDLWVSKVITIFVFPLNACANPFLYA
ITKKRFRKDIITATRRLKDKMMNKQEIRKSLLKLPIKGSLTYSTSVRRES
SCSFLFSRRHSAKQDSESSKQFTRQTTPCLPPSSFQQSFEEPDDEDYQER
LTTV
Run BLAST on NCBI

transcript from alignment at sc0000185:428323..432164+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014293 ID=TCONS_00014293|Name=TCONS_00014293|organism=Clytia hemisphaerica|type=transcript|length=3842bp|location=Sequence derived from alignment at sc0000185:428323..432164+ (Clytia hemisphaerica)
gTTTCATCAATGTTGAAGGTTTTGACACAGTTGATTTTTTGTGTTACTGT
GTGTGTAAAGTGTGTGCGACAgagagaaaaaggaaaaagagttcgaatta
ttttatgtgcgtgttgaatcgtaaaattttttttcggatcATAACATAAT
TTGACTGAGCTGTTGAAAGGTTTTATAACCGGATTGATTATTTCATCATA
GATAttacataaaaaaagaaaatattgaaaattgttgACAAATTATGGTA
TTATAGAAAACTTCTTGTGACCAAAAGactttttaacgatgaaatcgACA
ATGTTATTTATTTTGACGCTGGTCCCATTATTATTTTCGAACGTTGACTC
TAATTTGGTATATCTTTCACCGAATGTGACATGTCAAATCAAAACAAGTT
TATATTACAAGTTGTTGGATTGTTCGGATCGGAATTTGACAAAGATACCA
AACTTCAGACGCGTTCCATCTCTCGGacaacatgatattaatgaaatcac
tgaaatcaatttgaatTCAAATAAAATCAGAACGCTTGATTTACGACGGT
TAAACATATTCGGCAAATTAAATAAAGTTACGTTAGCTCGAAACAAAGTG
AAGAGGATCAACCTTAAAGAATCGAAACGTATCGCACAAATCGAGTTTCT
AAATCTTGACTATAATGAACTCACTGAAATACCCGACTCCATTCGATTGT
TTACGAATTTAAAAGAACTAAACATTCGATACAATCGATTCAAAACGGTA
CGAAATGACACTTTTCGAGGATTAAGCTTACTTCACACTTTGAACATTTT
CGATGAAAGAACGGAAGGATCAACTAATCATATCATCACACCCGAGATAG
GGGCGTTCCGCTATATGCCTAGTCTGCGCTCACTTGACTTCTTATCCCGT
GAACTCAAAATGGACCGATTCCCGGACTTAACGGGCACAAACAACCTTCG
TAAACTATACATCGCTAATATCGCCAACCTTAACATCCCTAAGACTTTCT
GTAGacaacaaaaatatcttcataCGATTGCTATATGGTATTGCGGTGGC
TCAGATGTGCCAAAACTCAACGAATGCAAAAGTTTAGAACGACTTGATCT
CAGCGAAAACCGATTTAATAAAATCGGGGAGAATCGAATTAGTGGATTAC
AAAAATTGGACACTTTCAGCATAAAGCAAGCAAGCTTTCACTGTCCGATC
CACCCTGATGCTTTTAACGATCTACCGAAACTTAAGAAATTGGATCTCTC
GCACTACGCCTTGACcaattttcttaacttaaaaAGAGCCCTTAGTCTTA
AAGAACTAAGTCTCGAAAACACACGATTACGTCAAATCCCAGCAACACTT
TGTTTAAATGCACCAGCTTTGGAAATCCTACATCTTCAAAATAACCGATT
TACAACATTGCCAAGTTTATCGAAATGCACGCATTTGTCTCGGTTGAACT
TAAATAGAAATCGTATCTCAGAACTGACGACACAATTCCGAAATCTCAAA
GATCTCTGGTTTGTGAGTCTAAAAGACAACTGGATTCGATACATCCCTGA
ATCAATTTTCAGCTCAAATCCAAAACTCGAATTCTTACACCTAAACCATA
ACTACATCCAAGAAATTCACCAAAATGCATTCGCCAACGCTACAAACCTT
CAATACCTTGACGTGTcaaacaatcttttaaaaagccTTCCCTCTAAAGG
TCTACAACGTTTAAAAGAAGTCCTTGCTTTTGGGAATAAAGATATGATCC
AATTTCCAACGCAACAAGAGNAAAAGGTTTACAACGTTTAAAAGAAGTCC
TTGCATTTGGTAATAAAGATATGATCCAATTTCCAACGCAACAAGAGTTA
CCACACGCCCGTAAATTGAAATTAGATTACCACTACCATTGCTGTTTCTT
CTTGCGACGCGTCCAACAAATCCATCATCGTTTCGAAATAACTGAAATGC
AAGGTAAAAGTAAAGCTGACTACGAATTCCAGGATGAAGACGATGAAGAC
TATGAACGAGACGCGGCTTTGGTTAAAAAATATACCAACCAAAGTGCAAC
ACCTTTAAGTAGCTCTCATGATGGTGTCGACCCCCTCCTCGTTAAATTTC
TCCAAGAGCTGAACAACCATACTACCATTTATATCAAGAATCCAGAGCCA
GATCAAGAAGAGAAACGAACAATATTGACCGACTTTTTTGATGGAGATGC
TTACTGTACTCCAACACCGAATGATTTCTATCCTTGTGAGGATCTGATGG
GACGTGAATGGCTCCGCATCTGTGTCTGGGTCGTCTTCTTGTTGGCTATC
TTCGGAAACATCACAGtcctttttgttaatttttcgaactaCAGTAAACT
TGATATCCCACGTTTTCTGGTCCTGAATTTAGCCATTGCCGATTTATTAC
TTGGAGTTTATTTGGGATTTCTGGCGTTTGTTGATATCAAGACAATTGGA
GATTTCCGCTCGCACGCACTCGATTGGCAGTTCAGTGGGAGCTGTAAGCT
GGCTGGCTTCATTGCCGTGTTTTCGAGTGAGTTGTCTGTGTTCACACTGA
CTGCTATTACAATGGAACGTTTCCTAACCATCAAAAACTGTATGTATATT
GAAAAACGTTTGACAAAGAATCAAGTATTTCTCATCATGGGTTTTGGTTG
GTTATTTTGCTCACTCGTGGCCACACTACCTTTAATAAACATTGGTGATA
TCAAATTCAATGACTATACAAAATATAGCGTGTGCCTACCCTTTGAAACT
GAAACATTAGCCTCTAGAATCTACCTTAGTTGTATTCTAGGGCTCAATTT
GTTGGCGTTTACAATCATCCTTTATTGTTACGTAAAGATTTATTTATTCA
TCCGTAACTCGCATGCGTGGAATTCAGGTGATTCCCTGGTCGCACGTCGT
GTCGGCATCTTAGTATTCACCGATTTCTTATGTTGGTTCCCGATCGCATT
AATCGCATTGTCAGCAGTTTTTGGAAACCCGTTCATCAAAGACTTGTGGG
TCTCAAAAGTCATCACGATATTTGTTTTCCCATTAAACGCATGCGCTAAC
CCGTTCTTATACGCTATCACCAAAAAACGTTTCCGTAAAGACATTATAAC
GGCAACGCGACGTTTAAAAGACAAAATGATGAATAAACAAGAAATACGTA
AATCCTTATTAAAACTCCCAATCAAGGGTAGTTTAACTTATTCAACGTCG
GTACGACGAGAATCTTCGTGCTCGTTTTTATTTAGTCGTCGGCATTCGGC
TAAACAAGACAGTGAGTCGTCGAAACAGTTTACTAGACAGACGACTCCAT
GTTTACCACCCTCATCTTTCCAACAATCTTTTGAGGAACCAGATGATGAA
GACTATCAAGAGAGACTTACTACCGTATAATCTTTTCCTACGTATAAACT
TTTTTTGTCATACTATATTCATGATGAAAACCTTTTAAAGTTGCTaagtt
ttttttgcattttcctaCGTTTTTTTAGAATGCCATGGAGAGTTAATAGA
TTATCACTATCTTGTTatcaaaatgactttaaaaatggatataaaacCCA
GATctgactttttgaaaatgttaaacaTTTTAAAGACTGCAGAGCTTGTT
TTGTGTATAATAGaggatatttttatttgtaTATATTGCTAAACTATATT
ATATAAAAGTATTTTATGTACTTAGAGAtatattttattcaaagatTTCT
AGCTGTCCTAGTAAAAACATTGATTGATTTTGTTTGAAAGCCTAAATGCT
ATAACAAACGATATTTTGCCGTAAATCTAGGTGCTTCTGCGGATATTTCT
CCTTTGAAAAGTATTTAGTGGAATTATTCAAGCTATGAGAGC

Coding sequence (CDS) from alignment at sc0000185:428323..432164+

>TCONS_00014293 ID=TCONS_00014293|Name=TCONS_00014293|organism=Clytia hemisphaerica|type=CDS|length=6030bp|location=Sequence derived from alignment at sc0000185:428323..432164+ (Clytia hemisphaerica)
atgaaatcgACAATGTTATTTATTTTGACGCTGGTCCCATTATTATTTTC
GAACGTTGACTCTAATTTGGTATATCTTTCACCGAATGTGACATGTCAAA
TCAAAACAAGTTTATATTACAAGTTGTTGGATTGTTCGGATCGGAATTTG
ACAAAGATACCAAACTTCAGACGCGTTCCATCTCTCGGacaacatgatat
taatgaaatcactgaaatcaatttgaatTCAAATAAAATCAGAACGCTTG
ATTTACGACGGTTAAACATATTCGGCAAATTAAATAAAGTTACGTTAGCT
CGAAACAAAGTGAAGAGGATCAACCTTAAAGAATCGAAACGTATCGCACA
AATCGAGTTTCTAAATCTTGACTATAATGAACTCACTGAAATACCCGACT
CCATTCGATTGTTTACGAATTTAAAAGAACTAAACATTCGATACAATCGA
TTCAAAACGGTACGAAATGACACTTTTCGAGGATTAAGCTTACTTCACAC
TTTGAACATTTTCGATGAAAGAACGGAAGGATCAACTAATCATATCATCA
CACCCGAGATAGGGGCGTTCCGCTATATGCCTAGTCTGCGCTCACTTGAC
TTCTTATCCCGTGAACTCAAAATGGACCGATTCCCGGACTTAACGGGCAC
AAACAACCTTCGTAAACTATACATCGCTAATATCGCCAACCTTAACATCC
CTAAGACTTTCTGTAGacaacaaaaatatcttcataCGATTGCTATATGG
TATTGCGGTGGCTCAGATGTGCCAAAACTCAACGAATGCAAAAGTTTAGA
ACGACTTGATCTCAGCGAAAACCGATTTAATAAAATCGGGGAGAATCGAA
TTAGTGGATTACAAAAATTGGACACTTTCAGCATAAAGCAAGCAAGCTTT
CACTGTCCGATCCACCCTGATGCTTTTAACGATCTACCGAAACTTAAGAA
ATTGGATCTCTCGCACTACGCCTTGACcaattttcttaacttaaaaAGAG
CCCTTAGTCTTAAAGAACTAAGTCTCGAAAACACACGATTACGTCAAATC
CCAGCAACACTTTGTTTAAATGCACCAGCTTTGGAAATCCTACATCTTCA
AAATAACCGATTTACAACATTGCCAAGTTTATCGAAATGCACGCATTTGT
CTCGGTTGAACTTAAATAGAAATCGTATCTCAGAACTGACGACACAATTC
CGAAATCTCAAAGATCTCTGGTTTGTGAGTCTAAAAGACAACTGGATTCG
ATACATCCCTGAATCAATTTTCAGCTCAAATCCAAAACTCGAATTCTTAC
ACCTAAACCATAACTACATCCAAGAAATTCACCAAAATGCATTCGCCAAC
GCTACAAACCTTCAATACCTTGACGTGTcaaacaatcttttaaaaagccT
TCCCTCTAAAGGTTTACAACGTTTAAAAGAAGTCCTTGCATTTGGTAATA
AAGATATGATCCAATTTCCAACGCAACAAGAGTTACCACACGCCCGTAAA
TTGAAATTAGATTACCACTACCATTGCTGTTTCTTCTTGCGACGCGTCCA
ACAAATCCATCATCGTTTCGAAATAACTGAAATGCAAGGTAAAAGTAAAG
CTGACTACGAATTCCAGGATGAAGACGATGAAGACTATGAACGAGACGCG
GCTTTGGTTAAAAAATATACCAACCAAAGTGCAACACCTTTAAGTAGCTC
TCATGATGGTGTCGACCCCCTCCTCGTTAAATTTCTCCAAGAGCTGAACA
ACCATACTACCATTTATATCAAGAATCCAGAGCCAGATCAAGAAGAGAAA
CGAACAATATTGACCGACTTTTTTGATGGAGATGCTTACTGTACTCCAAC
ACCGAATGATTTCTATCCTTGTGAGGATCTGATGGGACGTGAATGGCTCC
GCATCTGTGTCTGGGTCGTCTTCTTGTTGGCTATCTTCGGAAACATCACA
GtcctttttgttaatttttcgaactaCAGTAAACTTGATATCCCACGTTT
TCTGGTCCTGAATTTAGCCATTGCCGATTTATTACTTGGAGTTTATTTGG
GATTTCTGGCGTTTGTTGATATCAAGACAATTGGAGATTTCCGCTCGCAC
GCACTCGATTGGCAGTTCAGTGGGAGCTGTAAGCTGGCTGGCTTCATTGC
CGTGTTTTCGAGTGAGTTGTCTGTGTTCACACTGACTGCTATTACAATGG
AACGTTTCCTAACCATCAAAAACTGTATGTATATTGAAAAACGTTTGACA
AAGAATCAAGTATTTCTCATCATGGGTTTTGGTTGGTTATTTTGCTCACT
CGTGGCCACACTACCTTTAATAAACATTGGTGATATCAAATTCAATGACT
ATACAAAATATAGCGTGTGCCTACCCTTTGAAACTGAAACATTAGCCTCT
AGAATCTACCTTAGTTGTATTCTAGGGCTCAATTTGTTGGCGTTTACAAT
CATCCTTTATTGTTACGTAAAGATTTATTTATTCATCCGTAACTCGCATG
CGTGGAATTCAGGTGATTCCCTGGTCGCACGTCGTGTCGGCATCTTAGTA
TTCACCGATTTCTTATGTTGGTTCCCGATCGCATTAATCGCATTGTCAGC
AGTTTTTGGAAACCCGTTCATCAAAGACTTGTGGGTCTCAAAAGTCATCA
CGATATTTGTTTTCCCATTAAACGCATGCGCTAACCCGTTCTTATACGCT
ATCACCAAAAAACGTTTCCGTAAAGACATTATAACGGCAACGCGACGTTT
AAAAGACAAAATGATGAATAAACAAGAAATACGTAAATCCTTATTAAAAC
TCCCAATCAAGGGTAGTTTAACTTATTCAACGTCGGTACGACGAGAATCT
TCGTGCTCGTTTTTATTTAGTCGTCGGCATTCGGCTAAACAAGACAGTGA
GTCGTCGAAACAGTTTACTAGACAGACGACTCCATGTTTACCACCCTCAT
CTTTCCAACAATCTTTTGAGGAACCAGATGATGAAGACTATCAAGAGAGA
CTTACTACCGTATAAatgaaatcgACAATGTTATTTATTTTGACGCTGGT
CCCATTATTATTTTCGAACGTTGACTCTAATTTGGTATATCTTTCACCGA
ATGTGACATGTCAAATCAAAACAAGTTTATATTACAAGTTGTTGGATTGT
TCGGATCGGAATTTGACAAAGATACCAAACTTCAGACGCGTTCCATCTCT
CGGacaacatgatattaatgaaatcactgaaatcaatttgaatTCAAATA
AAATCAGAACGCTTGATTTACGACGGTTAAACATATTCGGCAAATTAAAT
AAAGTTACGTTAGCTCGAAACAAAGTGAAGAGGATCAACCTTAAAGAATC
GAAACGTATCGCACAAATCGAGTTTCTAAATCTTGACTATAATGAACTCA
CTGAAATACCCGACTCCATTCGATTGTTTACGAATTTAAAAGAACTAAAC
ATTCGATACAATCGATTCAAAACGGTACGAAATGACACTTTTCGAGGATT
AAGCTTACTTCACACTTTGAACATTTTCGATGAAAGAACGGAAGGATCAA
CTAATCATATCATCACACCCGAGATAGGGGCGTTCCGCTATATGCCTAGT
CTGCGCTCACTTGACTTCTTATCCCGTGAACTCAAAATGGACCGATTCCC
GGACTTAACGGGCACAAACAACCTTCGTAAACTATACATCGCTAATATCG
CCAACCTTAACATCCCTAAGACTTTCTGTAGacaacaaaaatatcttcat
aCGATTGCTATATGGTATTGCGGTGGCTCAGATGTGCCAAAACTCAACGA
ATGCAAAAGTTTAGAACGACTTGATCTCAGCGAAAACCGATTTAATAAAA
TCGGGGAGAATCGAATTAGTGGATTACAAAAATTGGACACTTTCAGCATA
AAGCAAGCAAGCTTTCACTGTCCGATCCACCCTGATGCTTTTAACGATCT
ACCGAAACTTAAGAAATTGGATCTCTCGCACTACGCCTTGACcaattttc
ttaacttaaaaAGAGCCCTTAGTCTTAAAGAACTAAGTCTCGAAAACACA
CGATTACGTCAAATCCCAGCAACACTTTGTTTAAATGCACCAGCTTTGGA
AATCCTACATCTTCAAAATAACCGATTTACAACATTGCCAAGTTTATCGA
AATGCACGCATTTGTCTCGGTTGAACTTAAATAGAAATCGTATCTCAGAA
CTGACGACACAATTCCGAAATCTCAAAGATCTCTGGTTTGTGAGTCTAAA
AGACAACTGGATTCGATACATCCCTGAATCAATTTTCAGCTCAAATCCAA
AACTCGAATTCTTACACCTAAACCATAACTACATCCAAGAAATTCACCAA
AATGCATTCGCCAACGCTACAAACCTTCAATACCTTGACGTGTcaaacaa
tcttttaaaaagccTTCCCTCTAAAGGTTTACAACGTTTAAAAGAAGTCC
TTGCATTTGGTAATAAAGATATGATCCAATTTCCAACGCAACAAGAGTTA
CCACACGCCCGTAAATTGAAATTAGATTACCACTACCATTGCTGTTTCTT
CTTGCGACGCGTCCAACAAATCCATCATCGTTTCGAAATAACTGAAATGC
AAGGTAAAAGTAAAGCTGACTACGAATTCCAGGATGAAGACGATGAAGAC
TATGAACGAGACGCGGCTTTGGTTAAAAAATATACCAACCAAAGTGCAAC
ACCTTTAAGTAGCTCTCATGATGGTGTCGACCCCCTCCTCGTTAAATTTC
TCCAAGAGCTGAACAACCATACTACCATTTATATCAAGAATCCAGAGCCA
GATCAAGAAGAGAAACGAACAATATTGACCGACTTTTTTGATGGAGATGC
TTACTGTACTCCAACACCGAATGATTTCTATCCTTGTGAGGATCTGATGG
GACGTGAATGGCTCCGCATCTGTGTCTGGGTCGTCTTCTTGTTGGCTATC
TTCGGAAACATCACAGtcctttttgttaatttttcgaactaCAGTAAACT
TGATATCCCACGTTTTCTGGTCCTGAATTTAGCCATTGCCGATTTATTAC
TTGGAGTTTATTTGGGATTTCTGGCGTTTGTTGATATCAAGACAATTGGA
GATTTCCGCTCGCACGCACTCGATTGGCAGTTCAGTGGGAGCTGTAAGCT
GGCTGGCTTCATTGCCGTGTTTTCGAGTGAGTTGTCTGTGTTCACACTGA
CTGCTATTACAATGGAACGTTTCCTAACCATCAAAAACTGTATGTATATT
GAAAAACGTTTGACAAAGAATCAAGTATTTCTCATCATGGGTTTTGGTTG
GTTATTTTGCTCACTCGTGGCCACACTACCTTTAATAAACATTGGTGATA
TCAAATTCAATGACTATACAAAATATAGCGTGTGCCTACCCTTTGAAACT
GAAACATTAGCCTCTAGAATCTACCTTAGTTGTATTCTAGGGCTCAATTT
GTTGGCGTTTACAATCATCCTTTATTGTTACGTAAAGATTTATTTATTCA
TCCGTAACTCGCATGCGTGGAATTCAGGTGATTCCCTGGTCGCACGTCGT
GTCGGCATCTTAGTATTCACCGATTTCTTATGTTGGTTCCCGATCGCATT
AATCGCATTGTCAGCAGTTTTTGGAAACCCGTTCATCAAAGACTTGTGGG
TCTCAAAAGTCATCACGATATTTGTTTTCCCATTAAACGCATGCGCTAAC
CCGTTCTTATACGCTATCACCAAAAAACGTTTCCGTAAAGACATTATAAC
GGCAACGCGACGTTTAAAAGACAAAATGATGAATAAACAAGAAATACGTA
AATCCTTATTAAAACTCCCAATCAAGGGTAGTTTAACTTATTCAACGTCG
GTACGACGAGAATCTTCGTGCTCGTTTTTATTTAGTCGTCGGCATTCGGC
TAAACAAGACAGTGAGTCGTCGAAACAGTTTACTAGACAGACGACTCCAT
GTTTACCACCCTCATCTTTCCAACAATCTTTTGAGGAACCAGATGATGAA
GACTATCAAGAGAGACTTACTACCGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007995XLOC_007995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014293-proteinTCONS_00014293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014293-exon-sc0000185-1491911889:428323..430021TCONS_00014293-exon-sc0000185-1491911889:428323..430021Clytia hemisphaericaexon
TCONS_00014293-exon-sc0000185-1510915933:428323..430021TCONS_00014293-exon-sc0000185-1510915933:428323..430021Clytia hemisphaericaexon
TCONS_00014293-exon-sc0000185-1575043694:428323..430021TCONS_00014293-exon-sc0000185-1575043694:428323..430021Clytia hemisphaericaexon
TCONS_00014293-exon-sc0000185-1491911889:430099..432164TCONS_00014293-exon-sc0000185-1491911889:430099..432164Clytia hemisphaericaexon
TCONS_00014293-exon-sc0000185-1510915933:430099..432164TCONS_00014293-exon-sc0000185-1510915933:430099..432164Clytia hemisphaericaexon
TCONS_00014293-exon-sc0000185-1575043694:430099..432164TCONS_00014293-exon-sc0000185-1575043694:430099..432164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:428323..432164 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0698381	0.00972902	0.0677779	0.0442067	10.2253	7.86755	10.223	10.8435	4.05233	10.5909	5.99399	3.50832	16.4755	12.5137	9.77813	8.0859	7.14508	7.38488	10.1602	15.1044	19.63	20.0436	4.54139	6.72878	11.9543	10.2961	1.84684	2.75939	136.625	126.913
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR002131Gphrmn_rcpt_fam
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0016500protein-hormone receptor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016500 protein-hormone receptor activity
Blast
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BLAST of TCONS_00014293 vs. Swiss-Prot (Human)
Match: TSHR (Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 5.961e-85
Identity = 187/517 (36.17%), Postives = 283/517 (54.74%), Query Frame = 1 
Query: 1573 KLEFLHLNHN-YIQEIHQNAFANA-TNLQYLDVSNNLLKSLPSKGLQRLKEVLAFGNKDMIQFPTQQELPHARKLKLDYHYHCCFF--LRRVQQIHHRFEITEMQGKSKAXXXXXXXXXXXXXXXAALVKKYTNQSATPLSSSHD-GVDPLLVKF-----LQELNNHTTIYI----------------KNPEPDQEEKRTILTDFFD-------GDAYCTPTPNDFYPCEDLMGREWLRICVWVVFLLAIFGNITVLFVNFSNYSKLDIPRFXXXXXXXXXXXXGVYLGFLAFVDIKTIGDFRSHALDWQFSGSCKLAGFIAVFSSELSVFTLTAITMERFLTIKNCMYIEKRLTKNQVFLIMGFGWLFCSLVATLPLINIGDIKFNDYTKYSVCLPFETETLASRIYLSCILGLNLLAFTIILYCYVKIYLFIRNSHAWNSG--DSLVARRVGILVFTDFLCWFPIALIALSAVFGNPFIKDLWVSKVITIFVFPLNACANPFLYAITKKRFRKDI 3018
            KL+ ++LN N Y+  I ++AF    +    LDVS   + +LPSKGL+ LKE++A     + + P      H  +  L Y  HCC F   ++++ I       E   +S                     +K  N   +PL   ++  +   +V +      Q+ +N+   Y+                KNP   QEE        +D        D  CTP  ++F PCED+MG ++LRI VW V LLA+ GN+ VL +  +++ KL++PRFL+ NLA AD  +G+YL  +A VD+ T  ++ +HA+DWQ    C  AGF  VF+SELSV+TLT IT+ER+  I   M +++++       IM  GW+ C L+A LPL+ I     + Y K S+CLP +TET  +  Y+  +L LN++AF I+  CYVKIY+ +RN   +N G  D+ +A+R+ +L+FTDF+C  PI+  ALSA+   P I  +  SK++ +  +PLN+CANPFLYAI  K F++D+
Sbjct:  201 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSHCCAFKNQKKIRGILESLMCNESSMQSLRQ------------------RKSVNALNSPLHQEYEENLGDSIVGYKEKSKFQDTHNNAHYYVFFEEQEDEIIGFGQELKNP---QEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALLGNVFVLLILLTSHYKLNVPRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQTGPGCNTAGFFTVFASELSVYTLTVITLERWYAITFAMRLDRKIRLRHACAIMVGGWVCCFLLALLPLVGI-----SSYAKVSICLPMDTETPLALAYIVFVLTLNIVAFVIVCCCYVKIYITVRNPQ-YNPGDKDTKIAKRMAVLIFTDFICMAPISFYALSAILNKPLIT-VSNSKILLVLFYPLNSCANPFLYAIFTKAFQRDV 689
The following BLAST results are available for this feature:
BLAST of TCONS_00014293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSHR5.961e-8536.17Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 ... [more]
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