TCONS_00014293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014293-protein
Unique NameTCONS_00014293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014293-protein ID=TCONS_00014293-protein|Name=TCONS_00014293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1004bp
MKSTMLFILTLVPLLFSNVDSNLVYLSPNVTCQIKTSLYYKLLDCSDRNL
TKIPNFRRVPSLGQHDINEITEINLNSNKIRTLDLRRLNIFGKLNKVTLA
RNKVKRINLKESKRIAQIEFLNLDYNELTEIPDSIRLFTNLKELNIRYNR
FKTVRNDTFRGLSLLHTLNIFDERTEGSTNHIITPEIGAFRYMPSLRSLD
FLSRELKMDRFPDLTGTNNLRKLYIANIANLNIPKTFCRQQKYLHTIAIW
YCGGSDVPKLNECKSLERLDLSENRFNKIGENRISGLQKLDTFSIKQASF
HCPIHPDAFNDLPKLKKLDLSHYALTNFLNLKRALSLKELSLENTRLRQI
PATLCLNAPALEILHLQNNRFTTLPSLSKCTHLSRLNLNRNRISELTTQF
RNLKDLWFVSLKDNWIRYIPESIFSSNPKLEFLHLNHNYIQEIHQNAFAN
ATNLQYLDVSNNLLKSLPSKGLQRLKEVLAFGNKDMIQFPTQQELPHARK
LKLDYHYHCCFFLRRVQQIHHRFEITEMQGKSKADYEFQDEDDEDYERDA
ALVKKYTNQSATPLSSSHDGVDPLLVKFLQELNNHTTIYIKNPEPDQEEK
RTILTDFFDGDAYCTPTPNDFYPCEDLMGREWLRICVWVVFLLAIFGNIT
VLFVNFSNYSKLDIPRFLVLNLAIADLLLGVYLGFLAFVDIKTIGDFRSH
ALDWQFSGSCKLAGFIAVFSSELSVFTLTAITMERFLTIKNCMYIEKRLT
KNQVFLIMGFGWLFCSLVATLPLINIGDIKFNDYTKYSVCLPFETETLAS
RIYLSCILGLNLLAFTIILYCYVKIYLFIRNSHAWNSGDSLVARRVGILV
FTDFLCWFPIALIALSAVFGNPFIKDLWVSKVITIFVFPLNACANPFLYA
ITKKRFRKDIITATRRLKDKMMNKQEIRKSLLKLPIKGSLTYSTSVRRES
SCSFLFSRRHSAKQDSESSKQFTRQTTPCLPPSSFQQSFEEPDDEDYQER
LTTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007995XLOC_007995Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014293TCONS_00014293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR002131Gphrmn_rcpt_fam
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0016500protein-hormone receptor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016500 protein-hormone receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 665..686
score: 32.39
coord: 632..656
score: 22.7
coord: 717..739
score: 27.69
coord: 803..826
score: 20.3
coord: 842..866
score: 26.43
coord: 881..907
score: 27.48
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 647..899
e-value: 7.2E-25
score: 87.6
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 723..739
IPR002131Glycoprotein hormone receptor familyPRINTSPR00373GLYCHORMONERcoord: 621..638
score: 58.12
coord: 710..724
score: 67.18
coord: 838..856
score: 50.61
coord: 657..670
score: 42.03
coord: 697..710
score: 39.01
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 358..377
e-value: 0.21
score: 20.7
coord: 115..134
e-value: 11.0
score: 13.5
coord: 263..282
e-value: 390.0
score: 1.6
coord: 451..470
e-value: 11.0
score: 13.5
NoneNo IPR availableGENE3D1.20.1070.10coord: 622..978
e-value: 2.8E-47
score: 160.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 962..1004
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 614..920
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 428..450
e-value: 1.0
score: 18.4
coord: 359..380
e-value: 32.0
score: 9.1
coord: 381..402
e-value: 58.0
score: 7.0
coord: 138..161
e-value: 0.93
score: 18.5
coord: 336..357
e-value: 82.0
score: 5.8
coord: 452..474
e-value: 8.9
score: 13.7
coord: 115..137
e-value: 80.0
score: 5.9
coord: 403..426
e-value: 20.0
score: 10.9
coord: 263..286
e-value: 290.0
score: 1.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 265..322
e-value: 2.3E-8
score: 33.5
coord: 121..171
e-value: 9.2E-7
score: 28.4
coord: 410..464
e-value: 4.2E-10
score: 39.1
coord: 336..393
e-value: 2.3E-7
score: 30.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 429..450
score: 7.119
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 314..335
score: 6.049
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 265..286
score: 6.541
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 117..138
score: 7.589
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 360..381
score: 8.12
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 69..89
score: 5.679
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 382..404
score: 6.511
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 453..474
score: 7.835
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 140..161
score: 6.118
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 405..426
score: 4.909
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 336..357
score: 6.341
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 315..621
e-value: 1.2E-50
score: 171.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 29..122
e-value: 1.9E-6
score: 26.8
coord: 123..220
e-value: 4.5E-14
score: 51.5
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 221..314
e-value: 4.9E-12
score: 44.9
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 181..507
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 40..227
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 647..899
score: 29.419

Blast
[Close]
BLAST of TCONS_00014293-protein vs. Swiss-Prot (Human)
Match: TSHR (Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.385e-96
Identity = 220/646 (34.06%), Postives = 340/646 (52.63%), Query Frame = 0 
Query:  303 PIHPDAFNDLPKLKKL------DLSHYALTNFLNLKRALSLKELSLENTR-LRQIPATLCLNAPALEILHLQNNRFTTLPSLSKCTH-----LSRLNLNRNRISELTTQFRNL-KDLWFVSLKDNWIRYIPESIFSSNPKLEFLHLNHN-YIQEIHQNAFANA-TNLQYLDVSNNLLKSLPSKGLQRLKEVLAFGNKDMIQFPTQQELPHARKLKLDYHYHCCFF--LRRVQQIHHRFEITEMQGKS----KADYEFQDEDDEDYER---DAALVKKYTNQSATPLSSSHDGV-----DPLLVKFLQELNNHTTIYIKNPEPDQEEKRTILTDFFD----GDA---YCTPTPNDFYPCEDLMGREWLRICVWVVFLLAIFGNITVLFVNFSNYSKLDIPRFLVLNLAIADLLLGVYLGFLAFVDIKTIGDFRSHALDWQFSGSCKLAGFIAVFSSELSVFTLTAITMERFLTIKNCMYIEKRLTKNQVFLIMGFGWLFCSLVATLPLINIGDIKFNDYTKYSVCLPFETETLASRIYLSCILGLNLLAFTIILYCYVKIYLFIRNSHAWNSG--DSLVARRVGILVFTDFLCWFPIALIALSAVFGNPFIKDLWVSKVITIFVFPLNACANPFLYAITKKRFRKDI 910
            P H  AF++LP + ++       L      +F NL +   +  + + NTR L  I        P L+ L + N      P L+K        +  +  N    S     F+ L  +   + L +N    +    F+   KL+ ++LN N Y+  I ++AF    +    LDVS   + +LPSKGL+ LKE++A     + + P      H  +  L Y  HCC F   ++++ I       E   +S    K+         ++YE    D+ +  K  ++     +++H  V     +  ++ F QEL        KNP   QEE        +D    GD+    CTP  ++F PCED+MG ++LRI VW V LLA+ GN+ VL +  +++ KL++PRFL+ NLA AD  +G+YL  +A VD+ T  ++ +HA+DWQ    C  AGF  VF+SELSV+TLT IT+ER+  I   M +++++       IM  GW+ C L+A LPL+ I     + Y K S+CLP +TET  +  Y+  +L LN++AF I+  CYVKIY+ +RN   +N G  D+ +A+R+ +L+FTDF+C  PI+  ALSA+   P I  +  SK++ +  +PLN+CANPFLYAI  K F++D+
Sbjct:   68 PSH--AFSNLPNISRIYVSIDVTLQQLESHSFYNLSK---VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSHCCAFKNQKKIRGILESLMCNESSMQSLRQRKSVNALNSPLHQEYEENLGDSIVGYKEKSKFQDTHNNAHYYVFFEEQEDEIIGFGQEL--------KNP---QEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALLGNVFVLLILLTSHYKLNVPRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQTGPGCNTAGFFTVFASELSVYTLTVITLERWYAITFAMRLDRKIRLRHACAIMVGGWVCCFLLALLPLVGI-----SSYAKVSICLPMDTETPLALAYIVFVLTLNIVAFVIVCCCYVKIYITVRNPQ-YNPGDKDTKIAKRMAVLIFTDFICMAPISFYALSAILNKPLIT-VSNSKILLVLFYPLNSCANPFLYAIFTKAFQRDV 689
The following BLAST results are available for this feature:
BLAST of TCONS_00014293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSHR1.385e-9634.06Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 ... [more]
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