TCONS_00014288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014288
Unique NameTCONS_00014288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014288 ID=TCONS_00014288|Name=TCONS_00014288|organism=Clytia hemisphaerica|type=transcript|length=3213bp
AGTTAAACCACGAACATGAAAACAAACCAGCGTCGATAAACTCAAAATAG
TAGGCGGGAAAGAGATAAAACCAGAGAAAGCTTGATGGTTGGCTTGGAGA
AGTGGATAAAAATGTCTAAATGAGGAAGTAAATCTTTTACATAGAAAGCT
TCATTACATATTAATTTTCAGCTTATAGGAGGTTTGCATACAACCACTTA
GTAGAATAAATTAGAGTGTTCTgtcttttctctttctttttccttttaat
tttttttaatcaaaataaaaaaaagggagGGGAGGGAGTTCTTTATGATT
CATCTTTTTAGCTAGCTAGCTAGCAAATTAAAGTTAAAACATGGGACGTT
TTTTTAGAGATGAGCAAACAAACTCAAATTGAAATCTATGAATCTATGAT
AGTACAGGTTTGATTTGATCACACTACAGTACTGTTCTCCTGACCTGACC
TGATTCTGATTTaaatgattttaatattttttaattaatccATATGTCTA
ATCTTTGGTTTTGGCTTTTGTGGTTTTGGAATAATATCCTACTGTCCTAG
TCAAATTTACAATACACCATATGAGTGTGTTTtatgaaaaacctttttta
atgGTAAAAATATTACATACTTGATTTGCGCATGTAcatgggtaacttgc
atcagtggagggaggAAACTTGCATACAGTCTGAGAAATCCTTCTAATTG
CACGCTTAACTTCCGCGGGCGTAAACTTGTAAATACGGGCTTATCATAGT
CCGCCCGAGTCCACCCATGTGCGATTGCACGTTTAATTTTCCGCCCTGCT
TGAAGAAGCTTGAGCAATATAGTGGggcttactttttttttaaacggaTG
GAACCATGGTCATGCGGAcaaaaacttatttttgaaTTGGAATCTTGGTA
AAATTTTGCATAAAATTGACCAAGcattccagatttttttccgagaAAAC
TCAAGGAAAATCGTCTATTTTGAACAAACAAacgaaaagtgttttcattt
cttttctaataACTTGTAAATGATGTACTGTATCTCAATGTAAGCAATGA
TAATAATACTGATTTAGATTATTTGGAACATGAAATTGATAggtaaaaac
acttttaaaaaccTTACAATTTGATAGCCGTGCAATTACGCGTTTAAATC
TCGGAATTTTAAGCGTGCAATTAGAAGGATTTCTCAGACtggcatagcca
tcaaatgactgaccaattaaagcagcaaaatttcaaacaaaagaaccaCG
AAgcttcgctcgcagctctactctaccatttttgttttgatttaactttg
tattttaatgacaagCCAGGTCATtgatttgagggctatgcatattagcc
tccactaatgcaagttagccgatctcacggtatatatgGTTAAGTCTCAG
CAGGAAACACCTAAGTCTGTTGTGACAAAAAGGTGtgcagtttttttatt
ttaggccAAAACACGGTCCAACTGGTTGGCATATGAAGAAAACTTTGGGT
ATTAAGCTTTCAATTGatgtaaaaatcattttctaagCACCACCAATCAA
AAgtgaaactgttttaaaatgttaagctaaaacaaatccaatacAATATG
cttgaatttcaaattattttgccGACAGGCCAGTCAATCAACATAATCCT
AAAGTCTAAAGAATCAACTGggaaacatttgaaagaaagtgTTTTTAAAA
GTGTAAACATTCTGCTTGATGATAAAGAATATTTTGGGTTGAAATATTCT
GATAGAAATGACGATACTCCGTCTTGGATAACTGATACtgataatttgaa
atcaatgaGCTTTTTAAAAGCAGACTCAAAGCACCCTTCCATGCAATTGT
CTGTGCGCATGTATCCACCCAATCCTGATTTTGCCATGTCAACACCAGAG
TCAAGAAATCTTTTCAGATGCCATATGAAAAATCTGCTTGTATCTAACAA
TCTTGGGTGTGATTCAAGAACTCATGCAATGTTGGATGGTTTTGTGGCCC
AATATGAATTAGGGGATTATCATGAGGAAACTATGAAAGCAGAATACGGG
AAAAAGATGAATAAGATCAATATTTATGCACCATCAATTCTCAGTGCTGG
AACCCCGATTGGTGAAGCAGAATATATTCAATTAGTCCGTAGCTACCACA
GAAAATTATCTGGAGTGAGACCAGCTCAGGCAGATATTTTGTATCTTGGT
ATGGTACAGAAACTCCCACTATATGGCTACAAAGTCTATAACATCTCaga
caaaataaacaaaaactaccACATGGCAATCTCAGCTCAAGGAattcatt
tcttttttgaatcAATTCTTGAAACATTTACCATTCCCAAACACAGAGAA
GCATATCCTTGGGCCTGTCTGGTTTTTGCAGAACAGGAAAGAAATAAAGT
GAAATTGGGCTTTTTCAATGATAAGGGAGCATTTTCAGAGCGGTATGTCA
AAGTTTCTGGAAAATTCAGCAATAGAAGTGGAGCAAAACTGGTCCAAGAT
GTTGAGCTTCATAAAGCAAATTTCCTTGATAAGATTGATGGAACCCAAAG
TATTGTTTACGATAGCAGAAAGAAGGCTCAAAGAGTCCATTCTACAAAAA
TCCCAAGAAGAAATTCAGCTTTCAATAGAACAGTGAACACTTTAGGTAGA
TCTATTAGGTCTTCTTTGAGAATCAACAAAAAGAAACGAATTTCCAGTGA
GGCTGACGCGGATTCGGGAACTGTTGATGAATTTGAACTTTCATCTAGCG
AAGTACATGCTGATtaataaaaaaaaggtttaaacTCTGCAATTCGTTGG
AGAGAGTTTGATTCAGAATTGCGGTTTTAATCTTATAAGtttcttatttt
gtttttcgACAGTTTTTGCctgttttgatgattttaacatgcgtttgttc
attttgtttgataaagaaaaaggggAAACATAATTCCgaacatatttttt
atataatgttGGTGGAgcaaatttttatgttttcaatactttttctaaat
ccacatttaaaaaactgttctaatcaaagaaaaaaaaacagcttgAATGT
TTAGATTTCTTGCAGTGTGTATTTTTTCCACatgTCGTCATGTTCCTAAT
ATAATTCTGTGTTCATAATTTTTGTTCtctaatttatgaaaattgacACG
TTGCatatattttgaaaagtaatttgtaatatttattgaaagactaaact
ttgcaaattttag
Run BLAST on NCBI

protein sequence of TCONS_00014288-protein

>TCONS_00014288-protein ID=TCONS_00014288-protein|Name=TCONS_00014288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MLEFQIILPTGQSINIILKSKESTGKHLKESVFKSVNILLDDKEYFGLKY
SDRNDDTPSWITDTDNLKSMSFLKADSKHPSMQLSVRMYPPNPDFAMSTP
ESRNLFRCHMKNLLVSNNLGCDSRTHAMLDGFVAQYELGDYHEETMKAEY
GKKMNKINIYAPSILSAGTPIGEAEYIQLVRSYHRKLSGVRPAQADILYL
GMVQKLPLYGYKVYNISDKINKNYHMAISAQGIHFFFESILETFTIPKHR
EAYPWACLVFAEQERNKVKLGFFNDKGAFSERYVKVSGKFSNRSGAKLVQ
DVELHKANFLDKIDGTQSIVYDSRKKAQRVHSTKIPRRNSAFNRTVNTLG
RSIRSSLRINKKKRISSEADADSGTVDEFELSSSEVHAD
Run BLAST on NCBI

transcript from alignment at sc0000185:220524..225001+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014288 ID=TCONS_00014288|Name=TCONS_00014288|organism=Clytia hemisphaerica|type=transcript|length=4478bp|location=Sequence derived from alignment at sc0000185:220524..225001+ (Clytia hemisphaerica)
AGTTAAACCACGAACATGAAAACAAACCAGCGTCGATAAACTCAAAATAG
TAGGCGGGAAAGAGATAAAACCAGAGAAAGCTTGATGGTTGGCTTGGAGA
AGTGGATAAAAATGTCTAAATGAGGAAGTAAATCTTTTACATAGAAAGCT
TCATTACATATTAATTTTCAGCTTATAGGAGGTTTGCATACAACCACTTA
GTAGAATAAATTAGAGTGTTCTgtcttttctctttctttttccttttaat
tttttttaatcaaaataaaaaaaagggagGGGAGGGAGTTCTTTATGATT
CATCTTTTTAGCTAGCTAGCTAGCAAATTAAAGTTAAAACATGGGACGTT
TTTTTAGAGATGAGCAAACAAACTCAAATTGAAATCTATGAATCTATGAT
AGTACAGGTTTGATTTGATCACACTACAGTACTGTTCTCCTGACCTGACC
TGATTCTGATTTaaatgattttaatattttttaattaatccATATGTCTA
ATCTTTGGTTTTGGCTTTTGTGGTTTTGGAATAATATCCTACTGTCCTAG
TCAAATTTACAATACACCATATGAGTGTGTTTtatgaaaaacctttttta
atgGTAAAAATATTACATACTTGATTTGCGCATGTAcatgggtaacttgc
atcagtggagggaggAAACTTGCATACAGTCTGAGAAATCCTTCTAATTG
CACGCTTAACTTCCGCGGGCGTAAACTTGTAAATACGGGCTTATCATAGT
CCGCCCGAGTCCACCCATGTGCGATTGCACGTTTAATTTTCCGCCCTGCT
TGAAGAAGCTTGAGCAATATAGTGGggcttactttttttttaaacggaTG
GAACCATGGTCATGCGGAcaaaaacttatttttgaaTTGGAATCTTGGTA
AAATTTTGCATAAAATTGACCAAGcattccagatttttttccgagaAAAC
TCAAGGAAAATCGTCTATTTTGAACAAACAAacgaaaagtgttttcattt
cttttctaataACTTGTAAATGATGTACTGTATCTCAATGTAAGCAATGA
TAATAATACTGATTTAGATTATTTGGAACATGAAATTGATAggtaaaaac
acttttaaaaaccTTACAATTTGATAGCCGTGCAATTACGCGTTTAAATC
TCGGAATTTTAAGCGTGCAATTAGAAGGATTTCTCAGACtggcatagcca
tcaaatgactgaccaattaaagcagcaaaatttcaaacaaaagaaccaCG
AAgcttcgctcgcagctctactctaccatttttgttttgatttaactttg
tattttaatgacaagCCAGGTCATtgatttgagggctatgcatattagcc
tccactaatgcaagttagccgatctcacggtatatatgGTTAAGTCTCAG
CAGGAAACACCTAAGTCTGTTGTGACAAAAAGGTGtgcagtttttttatt
ttaggccAAAACACGGTCCAACTGGTTGGCATATGAAGAAAACTTTGGGT
ATTAAGCTTTCAATTGatgtaaaaatcattttctaagCACCACCAATCAA
AAGTACAAAttctctttttcctttttcttcatTACCGTAAgatggtctaa
tgtcaacatccctcttctaattactttagagataggaatgaCCCCTCTGA
TTGCtaaggaaaaaaacatttctatCAGTGGGTCTGACCTTCCTATATTC
CTACATTGAAGGAATAAATTTTGgcaagaatttaatttggcagatggccg
aaaaagtttttttcagagGAAATCTAATTTGGCCGTCAACttggaaaatt
aaatttggcattAGACTTTAGTTGATCacttctatttttttgttttgcca
gGTTCCTGCTACCACATTatatacaatttttattttgctaACAATACTGT
atcttcttttttccttttcaggtgaaactgttttaaaatgttaagctaaa
acaaatccaatacAATATGcttgaatttcaaattattttgccGACAGGCC
AGTCAATCAACATAATCCTAAAGTCTAAAGAATCAACTGggaaacatttg
aaagaaagtgTTTTTAAAAGTGTAAACATTCTGCTTGATGATAAAGAATA
TTTTGGGTTGAAATATTCTGATAGAAATGACGATACTCCGTCTTGGATAA
CTGATACtgataatttgaaatcaatgaGCTTTTTAAAAGCAGACTCAAAG
CACCCTTCCATGCAATTGTCTGTGCGCATGTATCCACCCAATCCTGATTT
TGCCATGTCAACACCAGAGTCAAGAAATCTTTTCAGATGCCATATGAAAA
ATCTGCTTGTATCTAACAATCTTGGGTGTGATTCAAGAACTCATGCAATG
TTGGATGGTTTTGTGGCCCAATATGAATTAGGGGATTATCATGAGGAAAC
TATGAAAGCAGAATACGGGAAAAAGATGAATAAGATCAATATTTATGCAC
CATCAATTCTCAGTGCTGGAACCCCGATTGGTGAAGCAGAATATATTCAA
TTAGTCCGTAGCTACCACAGAAAATTATCTGGAGTGAGACCAGCTCAGGC
AGATATTTTGTATCTTGGTATGGTACAGAAACTCCCACTATATGGCTACA
AAGTCTATAACATCTCagacaaaataaacaaaaactaccACATGGCAATC
TCAGCTCAAGGAattcatttcttttttgaatcAATTCTTGAAACATTTAC
CATTCCCAAACACAGAGAAGCATATCCTTGGGCCTGTCTGGTTTTTGCAG
AACAGGAAAGAAATAAAGTGAAATTGGGCTTTTTCAATGATAAGGGAGCA
TTTTCAGAGCGGTATGTCAAAGTTTCTGGAAAATTCAGCAATAGAAGTGG
AGCAAAACTGGTCCAAGATGTTGAGCTTCATAAAGCAAATTTCCTTGATA
AGATTGATGGAACCCAAAGTATTGTTTACGATAGCAGAAAGAAGGCTCAA
AGAGTCCATTCTACAAAAATCCCAAGAAGAAATTCAGCTTTCAATAGAAC
AGTGAACACTTTAGGTAGATCTATTAGGTCTTCTTTGAGAATCAACAAAA
AGAAACGAATTTCCAGTGAGGCTGACGCGGATTCGGGAACTGTTGATGAA
TTTGAACTTTCATCTAGCGAAGTACATGCTGATtaataaaaaaaaggttt
aaacTCTGCAATTCGTTGGAGAGAGTTTGATTCAGAATTGCGGTTTTAAT
CTTATAAGtttcttattttgtttttcgACAGTTTTTGCctgttttgatga
ttttaacatgcgtttgttcattttgtttgataaagaaaaaggggAAACAT
AATTCCgaacatattttttatataatgttGGTGGAgcaaatttttatgtt
ttcaatactttttctaaatccacatttaaaaaactgttctaatcaaagaa
aaaaaaacagcttgAATGTTTAGATTTCTTGCAGTGTGTATTTTTTCCAC
ATGTcgtctagcctggatatccagtctgtaaattatttcacagtctagtt
ttagatattttatgttctgatttacagcctggtctccctagagcgttttg
cattctcatatgagaatgcagtccgcNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgccctgggttggctaggaaacatgggttttcactttc
attctctagggagaccaagctctataatttaagaactttgtatgttgagg
taaattttattttttcttaaattttgagcttggatatccaggctacatgT
CGTCATGTTCCTAATATAATTCTGTGTTCATAATTTTTGTTCtctaattt
atgaaaattgacACGTTGCatatattttgaaaagtaatttgtaatattta
ttgaaagactaaactttgcaaattttag

Coding sequence (CDS) from alignment at sc0000185:220524..225001+

>TCONS_00014288 ID=TCONS_00014288|Name=TCONS_00014288|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000185:220524..225001+ (Clytia hemisphaerica)
ATGcttgaatttcaaattattttgccGACAGGCCAGTCAATCAACATAAT
CCTAAAGTCTAAAGAATCAACTGggaaacatttgaaagaaagtgTTTTTA
AAAGTGTAAACATTCTGCTTGATGATAAAGAATATTTTGGGTTGAAATAT
TCTGATAGAAATGACGATACTCCGTCTTGGATAACTGATACtgataattt
gaaatcaatgaGCTTTTTAAAAGCAGACTCAAAGCACCCTTCCATGCAAT
TGTCTGTGCGCATGTATCCACCCAATCCTGATTTTGCCATGTCAACACCA
GAGTCAAGAAATCTTTTCAGATGCCATATGAAAAATCTGCTTGTATCTAA
CAATCTTGGGTGTGATTCAAGAACTCATGCAATGTTGGATGGTTTTGTGG
CCCAATATGAATTAGGGGATTATCATGAGGAAACTATGAAAGCAGAATAC
GGGAAAAAGATGAATAAGATCAATATTTATGCACCATCAATTCTCAGTGC
TGGAACCCCGATTGGTGAAGCAGAATATATTCAATTAGTCCGTAGCTACC
ACAGAAAATTATCTGGAGTGAGACCAGCTCAGGCAGATATTTTGTATCTT
GGTATGGTACAGAAACTCCCACTATATGGCTACAAAGTCTATAACATCTC
agacaaaataaacaaaaactaccACATGGCAATCTCAGCTCAAGGAattc
atttcttttttgaatcAATTCTTGAAACATTTACCATTCCCAAACACAGA
GAAGCATATCCTTGGGCCTGTCTGGTTTTTGCAGAACAGGAAAGAAATAA
AGTGAAATTGGGCTTTTTCAATGATAAGGGAGCATTTTCAGAGCGGTATG
TCAAAGTTTCTGGAAAATTCAGCAATAGAAGTGGAGCAAAACTGGTCCAA
GATGTTGAGCTTCATAAAGCAAATTTCCTTGATAAGATTGATGGAACCCA
AAGTATTGTTTACGATAGCAGAAAGAAGGCTCAAAGAGTCCATTCTACAA
AAATCCCAAGAAGAAATTCAGCTTTCAATAGAACAGTGAACACTTTAGGT
AGATCTATTAGGTCTTCTTTGAGAATCAACAAAAAGAAACGAATTTCCAG
TGAGGCTGACGCGGATTCGGGAACTGTTGATGAATTTGAACTTTCATCTA
GCGAAGTACATGCTGATtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007992XLOC_007992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014288-exon-sc0000185-1491911889:220524..222075TCONS_00014288-exon-sc0000185-1491911889:220524..222075Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1510915933:220524..222075TCONS_00014288-exon-sc0000185-1510915933:220524..222075Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1575043694:220524..222075TCONS_00014288-exon-sc0000185-1575043694:220524..222075Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1491911889:222445..223973TCONS_00014288-exon-sc0000185-1491911889:222445..223973Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1510915933:222445..223973TCONS_00014288-exon-sc0000185-1510915933:222445..223973Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1575043694:222445..223973TCONS_00014288-exon-sc0000185-1575043694:222445..223973Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1491911889:224870..225001TCONS_00014288-exon-sc0000185-1491911889:224870..225001Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1510915933:224870..225001TCONS_00014288-exon-sc0000185-1510915933:224870..225001Clytia hemisphaericaexon
TCONS_00014288-exon-sc0000185-1575043694:224870..225001TCONS_00014288-exon-sc0000185-1575043694:224870..225001Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014288-proteinTCONS_00014288-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:220524..225001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.0737	26.8067	14.2041	13.265	26.5134	20.2152	19.8293	19.3331	12.0374	13.0404	7.17844	6.25379	3.2923	2.49679	3.28754	3.61471	6.29113	6.3985	1.9386	2.33446	6.03522	5.41161	19.292	19.3161	23.6337	20.0576	7.29433	6.70136	21.5653	19.4206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019749Band_41_domain
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR019748FERM_central
IPR000299FERM_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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