TCONS_00014287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014287
Unique NameTCONS_00014287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014287 ID=TCONS_00014287|Name=TCONS_00014287|organism=Clytia hemisphaerica|type=transcript|length=1328bp
ACTGATGATACATTTGACGctctcaatttgacgttttactaCTCAGTTCC
GTTATCGAATAAATTGAAATCGCCTTCAAACTTCCTGAAGAAACTCTCAT
AGTTGACAGTTTATTGTTTAATATGCTAGTTTTATTGAGATTTCAAGTCA
TTTTTATTCTCACATTCAATTTGAAGTATAAAGAGGTATTTACGAGAAAT
CTTCCAACTACTCGATGTACTCTGAAAACTAATTTGAGTTCCACTTAAAG
AATAAAtttagagagcatcaacaataccatatttatcatcctaagggctt
ttgatgcgcaagctaaaccggcgtttgtTATATATATAACCTAGTTATAT
ATCTAACCGACTTTGTAAATCACGATAGGTAAACCGGAGGAAAAGAACTC
AGAAATAATTGGCCAACTCACTATTGCAAAGAATAGATCCCTTCTTTGCA
ACAGTGAGTCAAGAATTGTTTCCTATTGCATATGGTGTGCCGAAGTATTT
CCTTGTGTATTGTAGGCTATCATCATGGCAGTCGAAAAACGATCGATAGG
GAGTCACTGTTGAATCACTTGGGGCTAAGTAAGGAAGACTTTGTACGAAC
TCAGATAGAGAAAGAAACAATATACGATTAAAGGTTCAAATTTAATCTTC
ACAACAACGGTACACATTTATGGAGAGAAAGCACACCTTTCAAACAAACA
ATTGTGATGTATGATTACAATTCTGAATCCGGTGCTTTTAATAAGTTTCA
TCACTATGTTATCCTGACAAGAGGTATCGTCGCTGATGGATCAGCGGTTT
TCAGTTGTTCGTGCGAGATTCACAAAGTGCTGTCCTCAACGTCGAAAAGC
GACGACTGGGATGGTATAACCTGTTGTCTTTTCAACATTATCCGGGAAGA
GAACATCGACTTTCCTGTAATGCAGTATGGAACAATCTAAGCCTGATTGT
GTGCTAGCAAATAAAGTAAATGACGGGTTGAATTAGATTAATACCGATAT
TTGCCAACTTCCATCTTCATCCGACAAGGTCCAAAAGTATTCTGTTTGCT
CATCAGCAGGGCATCAAATTGTACACGTGTTTGAAGACAATAAAAGTGGC
GTTATTTATGTGAAATATATGCCCGGTCTATGTATGAAAGCCTTTCGTAA
GAAAATAAATCCACAGACTCTCAAAACCGCCTCACTTTGCCATCAGATTG
CTGTCTTTAAAGGTTATTTTGACAATAATTGGGAGAAACATTCACATTGA
TTGGCAAAATAGCAGCCTGAACAGGAAGAAATTAAATGTTCCATTCATTA
ATAGAAAATCGATGGCTTTGATGTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000185:203679..205911+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014287 ID=TCONS_00014287|Name=TCONS_00014287|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at sc0000185:203679..205911+ (Clytia hemisphaerica)
ACTGATGATACATTTGACGctctcaatttgacgttttactaCTCAGTTCC
GTTATCGAATAAATTGAAATCGCCTTCAAACTTCCTGAAGAAACTCTCAT
AGTTGACAGTTTATTGTTTAATATGCTAGTTTTATTGAGATTTCAAGTCA
TTTTTATTCTCACATTCAATTTGAAGTATAAAGAGGTATTTACGAGAAAT
CTTCCAACTACTCGATGTACTCTGAAAACTAATTTGAGTTCCACTTAAAG
AATAAAtttagagagcatcaacaataccatatttatcatcctaagggctt
ttgatgcgcaagctaaaccggcgtttgtTATATATATAACCTAGTTATAT
ATCTAACCGACTTTGTAAATCACGATAGGTAAACCGGAGGAAAAGAACTC
AGAAATAATTGGCCAACTCACTATTGCAAAGAATAGATCCCTTCTTTGCA
ACAGTGAGTCAAGAATTGTTTCCTATTGCATATGGTGTGCCGAAGTATTT
CCTTGTGTATTGTAGGCTATCATCATGGCAGTCGAAAAACGATCGATAGG
GAGTCACTGTTGAATCACTTGGGGCTAAGTAAGGAAGACTTTGTACGAAC
TCAGATAGAGAAAGAAACAATATACGATTAAAGGTTCAAATTTAATCTTC
ACAACAACGGTACACATTTATGGAGAGAAAGCACACCTTTCAAACAAACA
ATTGTGATGTATGATTACAATTCTGAATCCGGTGCTTTTAATAAGGTATA
CTTCAATACTTTACTTGAAATTGTATAAATGATAGGAAAGGGAATATTAT
TAGGTCAGATTCgagaaaaatctaaatttaaaatcaaaatatacttTTTA
CTCCGTAGTAATACGTTACTTATAATGTGCTAATGAGAAATTTTGCGAAG
TTATTTTGTTGCAGTGTGTACAAAGCCACGTtgaaatttgtaattttttt
caaattcttttgaattctattttcTAGTTTCATCACTATGTTATCCTGAC
AAGAGGTATCGTCGCTGATGGATCAGCGGTTTTCAGTTGTTCGTGCGAGA
TTCACAAAGTGCTGTCCTCAACGTCGAAAAGCGACGACTGGGATGGTATA
ACCTGTTGTCTTGTACGTGCAATTAATAAAGATATGTATTCAAAGGTTAA
ATTTTATTTATCGCACTTAAGAAGATTAGAATTAAGAAGATTTATAAAGG
ATCGTTGaccgttttttatttgttattgGAAGTGTTATAAAGTTATAAAG
AGTTATTCCAATCGAAAAGTCTCTGACATTGTGGCTATTTTAGACCAATT
TTGTTATTAGCATTCTGTCCATACCAAgttaattcaaattcaaatttcat
atttgattttctttcagTTCAACATTATCCGGGAAGAGAACATCGACTTT
CCTGTAATGCAGTATGGAACAATCTAAGCCTGATTGTGTGCTAGCAAATA
AAGTAAATGACGGGTTGAATTAGATTAATACCGATATTTGCCAACTTCCA
TCTTCATCCGACAAGGTCCAAAAGTATTCTGTTTGCTCATCAGCAGGGCA
TCAAATTGTACACGTGTTTGAAGACAATAAAAGTGGCGTTATTTATGTGA
AATATATGCCCGGTCTATGTATGAAAGCCTTTCGTAAGAAAATAAATCCA
CAGACTCTCAAAACCGCCTCACTTTGCCATCAGATTGCTGTCTTTAAAGG
TTATTTTGACAATAATTGGGAGAAACATTCACATTGATTGGCAAAATAGC
AGCCTGAACAGGAAGAAATTAAATGTTCCATTCATTAATAGGTGCATATA
CGCAATATTCTTTGATGTCCCAGTCTTATCGTCGGGGATGTTCTTCATGA
ATGCTCCCGATTTTAAGTCTAGAGTGTCTCTGAAtaatgtatttcaaaat
ttaagataTTTAAAAGGAATATTTTGTCCCATTAATTTGCCTTTAGGGAA
GTTCGTGAAACTAATATACAATAAGCTATGTTTTTAGTTTAAGGCAATTT
ATTAGACACCATCTGATTTAAAACCTTCGAACACAATAGTTTAGTTTTAA
GATTTGGTCAACAATCAGTATGAGTTAGGACGCTGTGCTCCTTGGTAGTA
TCAGTTCAACTTAATTGGTTAAGCAAAATCTTTATCCTAGACTCCTCAAT
ACTATAACAATCTGTACCCGTCAAATTATTACAattttaattcaatattt
tacccATAGAAAATCGATGGCTTTGATGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007991XLOC_007991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014287-exon-sc0000185-1491911889:203679..204423TCONS_00014287-exon-sc0000185-1491911889:203679..204423Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1510915933:203679..204423TCONS_00014287-exon-sc0000185-1510915933:203679..204423Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1575043694:203679..204423TCONS_00014287-exon-sc0000185-1575043694:203679..204423Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1491911889:204656..204790TCONS_00014287-exon-sc0000185-1491911889:204656..204790Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1510915933:204656..204790TCONS_00014287-exon-sc0000185-1510915933:204656..204790Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1575043694:204656..204790TCONS_00014287-exon-sc0000185-1575043694:204656..204790Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1491911889:205046..205469TCONS_00014287-exon-sc0000185-1491911889:205046..205469Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1510915933:205046..205469TCONS_00014287-exon-sc0000185-1510915933:205046..205469Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1575043694:205046..205469TCONS_00014287-exon-sc0000185-1575043694:205046..205469Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1491911889:205888..205911TCONS_00014287-exon-sc0000185-1491911889:205888..205911Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1510915933:205888..205911TCONS_00014287-exon-sc0000185-1510915933:205888..205911Clytia hemisphaericaexon
TCONS_00014287-exon-sc0000185-1575043694:205888..205911TCONS_00014287-exon-sc0000185-1575043694:205888..205911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:203679..205911 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158524	0.432841	0.521141	0.526807	1.92401	1.08116	0.896755	1.86987	0.854947	0.860429	0.899396	0.844611	0.885608	1.44526	0.64811	0.927362	1.33284	1.21975	0.640356	0.423213	1.14043	0.762551	0.50893	0.958433	3.43805	3.85826	0.956421	0.510359	0.586647	0.6095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top