TCONS_00014281 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014281
Unique Name	TCONS_00014281
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	791

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000185:172323..177941+

transcript sequence

>TCONS_00014281 ID=TCONS_00014281|Name=TCONS_00014281|organism=Clytia hemisphaerica|type=transcript|length=791bp
tagGGCATTTGTTGGATCAGAGCAGATTGAAATGTATTGGGCCATCAAAA
CAGGCACCCTGGTGGAGCGCAGTCCGCAAGAACTTTTGTCCTGTTCTCCA
TCGCTGGGTTGTGAAGGTGGAAACACTTGCCTTGCACTTCAATGGCTCGA
AAAGACTCGGATTGTGTTGGAAACAGAGAAGAACTACCCGTACGAAGAAA
AAGATACAGCTTGTCGACAAGTAAACAAgaCAATGGAAGGCCCTCGTGTC
GATGCAGTATGTGGGTGTCAGAATTTGGTAAATAGAGAGGATGCTATGTT
GAGAATTTTGGATCAAAAAGGACCGTTAAGTGTCAATGTTGATGCAGTAC
AGTGGCATGACTACATAGGAGGAATAATTCAGCACCATTGTACGAACAAA
AACATGAATCACGCCGTTCAGCTTATTGGTTACGACCTTGTCAGTGGTCC
AATCCCTTACTACATAGCGCGTAATCAATGGGGAAAATCTTTCGGTGAAG
ATGGTTACGTTCGAATCAAGTATGGTGATAACCAATGTGgtATCGCTCAA
CAGCCTTCGTTTATCCAAGTCGTTTGATGAGAAGACATGACAGAACTTCA
AGTTCGCCGTAAATTATTGAACATATCtgaacatattcaatttttttcta
tccaaaattttatacgcattttctattagatttttttttttaatttcatg
tGAATTTCAATAGAgttttatatcattttcaatTGATAACGcagttattt
attttgttgtcGATTATACACTCAGTAACCTCTCTTTAAAC

Run BLAST on NCBI

transcript from alignment at sc0000185:172323..177941+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014281 ID=TCONS_00014281|Name=TCONS_00014281|organism=Clytia hemisphaerica|type=transcript|length=5619bp|location=Sequence derived from alignment at sc0000185:172323..177941+ (Clytia hemisphaerica)
tagGGCATTTGTTGGATCAGAGCAGATTGAAATGTATTGGGCCATCAAAA
CAGGCACCCTGGTGGAGCGCAGTCCGCAAGAACTTTTGTCCTGTTCTCCA
TCGCTGGGTTGTGAAGGTGGAAACACTTGCCTTGCACTTCAATGGCTCGA
AAAGGTTTGAACATCAACTTTTTAAGAAGACAAGAAAACGATAATTCTGt
actcttttttaaaaaaatcacgaaaaagtTCTTGTACCAGCTTGTATTCA
CAATAAAATTACATAATTTTGCAATTAGACGTGAGTGATCATAAAActta
tataattttttgaatattcaTAGAAGGGTTGTAAGCTCCAAACGGAGATC
ACTATGACCATATAAAAACGAAGAAATAGCGATAATAAAAAACGACAATA
AAAACGACATATTTACCTATCCTAACCCTGGACCCCCGACCTTAGAAGTG
ATACCACCCCTACATTTCAAAACTTGGTGATATGGAACATTTTATTCGCC
CTTCAGAActctagaattttttttcattacacATGCTAAACCTGGCTAAA
CAAATGCATTCGCGAGATCACCTCAAGTACCGCGGTCCTCTTTCGTACGA
CATTCTATAGAGCGCAGTGCTAAATATCGAAACGATATTAGTTGTACATT
TCGCGATTTTTATATGCAAGAAACTCTGAGTATATGAAACTGTGCTTATT
AAAGTACTTTTCATTTAATTTAAGACTCGGATTGTGTTGGAAACAGAGAA
GAACTACCCGTACGAAGAAAAAGATACAGCTTGTCGACAAGTAAACAAGT
GAGAAGTATAGGGGGTTTACAACTAACTTTTTCATGATTATATACCTCCT
GCGATGATATTGAATAAACTTTATAGAAGGGGTATATTTCCCGCtagata
ctctcgggtacctaatagccggaggggggttggaataagcggggggttgg
aaaaaatctcaaaacttaataagcggggggNCCCCCCCCCCTTGGACGTT
AAAAAATCACCACCCCTAATCAGAGCAATTTTCCCCCAAAACAAGGTAAA
CTtcgcagatttttcactacccccggtcaaaatatcctccacccttcATG
TACAAAAAATTTCTGGAAGAGCGCAATATCGGatgtgaaagaaaaaagca
CATCAAAAGCATTTCAGCTTTGGTATATGAAAtaaatatgtttaaaaaaa
tagtGTATTTAATCAATAGTCAACCTCTAcctctttgttttcttttccgA
TTCACTTTGCTCACTTTCGCTTGATAGTACGTCCTGTGGTGCTCGTAGTA
GCATAAAATGGCCTTTCCCTCCTTGACCTCGTTTGCACTCATCTCTGCTC
CTGTGGCTACATCCTTCGGCTGCGCCTTTTTGAAAGGTAACACCATCTGC
ATATGCGAGCCATCTTGCTCGGGCTGCGTAAACATGACTGTTATTACCGG
GCCTTCATCTTTGCCTGGTGAAATTAAGGAAATATTAGTTAGTTCCCATA
AAACATTCCTTAGTCTGTGAAAATAAgcttaataaacggggggacctaat
tgctgGGCGGGGATTGGAGAttttacttctgaaaacccatgaataaggta
aatataggctaaattGAGGTGACTACTTTTTGCTttccgaaaatattttt
aacaattaATAAGTGGGGGGTcataataaggtccggggggttaaattttc
gaaaaattaattagcgggggggggggacggctattaagtacccgagactc
aacttcagttgagctcgAATCTGgcaatgtctgtgtgtctgtctgccTGT
TTGTATGTTTGTTGGgatggagacttcaaaaatggtcgatttggctgaaa
ttagGCACACGTGTTCCTTGGGttaatatctgggggtgtttttttttttt
ttcattttttcaaagttttcatttttaagggcgtggtcactaGATTTAgc
accaaaacgaggcttaaaaactttgggacaggctggagacttcaaaaatg
gtcaatttggctgaaattatttttatatatcGATTTTACTATGTTCATGA
TTTTACTATGTATGAGTGAATCATACAGGAGTGGTCATTTTTAGCGTTTA
TTATTCctcaaataattttgatttttcaggaCAATGGAAGGCCCTCGTGT
CGATGCAGTATGTGGGTGTCAGAAGTGAGGTTTTgacttatttattttga
aagctCAAATTCataaacacccctttctcacagacccggtcaaaattttt
cagcaatttgggataaaaataacggtcTGAAACTCGATGTGGatcgatat
tcccatattttttatggctgggggtataaattattttgttttcaagtcag
aaaatctaGTGTGGTGGGAAAacagcacaatattttgcattgaggattgg
tttatttgattattttcagtggggaccaAAATCGGAGGATAATTGTCCAC
CtgagacgatattttggccaattttttcagtgggaaggggtgTTTATAGT
AAGAAgtataatgaaaattttgagaCACAACATTTATTTCTGGCGGCTCC
GGAAATTGTTTTTCCGTCAGCGGCCGAAGGCCTGAAtaaacggccgaaga
cctgaattaacggtcgaagacctgaatcaacggccgaagacctgttTCAA
CGACCGAAGACCTgatttaacggccgaagacctgatttagcaaGTCACCG
GCCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGCTTGAACCAC
TCGGCAAGGCATCAGTTGCGATGGTCCAGTGGTTATTGCAGTGGTATCGA
AAACGGATGGTGGGTAGTTTAAGACAAGTTATTGGCATTAATTCTCAttc
tttttagtttaaaatctttaaacttaatttgttttcaatacaattacaat
ttgattgaatttataaaaaagatttatcacAAATTTCCACAATTCATTTT
CTCCAGGTCTTCGACCGTTAAAAAAGGTATTCGACCACTGCACCAAGTCT
TCGGtttttaattcaggtcttcggccgctaaatcaggtctgcgACCGCTA
ATTCAGGTCTGCGtccgctgacggaaaaaaaatctgcgGCTGCTCCATTT
ACTCTCTGTCTAGGTCAATTTGTTACCGTATGTTATGTATTTGCTTGCAT
CCAgataaaatttatttgtttttatacaGTTTGGTAAATAGAGAGGATGC
TATGTTGAGAATTTTGGATCAAAAAGGACCGTTAAGTGTCAATGTTGATG
CAGTACAGTGGCATGACTACATAGGTACGTTGCATTCTTTGATTTTCCGC
ACTAGaatcagcgccgaaatatattggcaattttgggtattttaacgtat
ttcagaatttaaaggtcgggcgagaattgcagaTTCAGTACTTTCACTtt
gcttcattagatttttcGATCTTGGAATgattaagtggcttccaggctat
attctcagcctcgTTGGatcatttttgagcttttagatcctgagatccaa
gtcttaagtctaatatTAAatctcagagttaaaactctacttccgaACTG
TACTattcaaagcacttaaaaatcacttgcgggtttaaagttttgaggga
attccccttcaCATCTATTTTTGACAGAACAATCCTGGTTCAAGATTTAA
GACAGTGTTATTGAAACTACAACCCTTTAGCGACGGGGATGtttttttct
tggattttttaaaaacgaaaaagGTCCAATTCTCAAAACTTGGAGGAATT
GGAAACTCGATTATAGGGGACAAACTTGAGAAACAATTCGGGACCTCCGG
ACCTTGGGACCTTGGGTTAGTAAGTTTTTTTCCACATTATaatattgaga
ttttcattttagggCACGGTTTTGATATAAATGTTTGAAAGAGAATATCT
AAACTAATTCTGCGATTTCGTTCTGTTAAATACACATTAGAAATCATAGC
CGATGGTGTAAAATCTTCAGCTCACTAGAAATCTACAAGTCTTCTTTTCT
TCGAGGGCGGTTTTGGGGtgtcttgggggggggggtgagtAGGTGAGGAG
AATCAGGCCTGATGTACAATGTATTATGTATTCTCATTGGTTATAGGGTT
AACGCGAAATCAGAAGTGTGGGGATGATCTTATCAATGATAGACCCGAAG
TTTGATAAGACGTCACCATTATTTCTTGTCTCTTTTCAGGAGGAATAATT
CAGCACCATTGTACGAACAAAAACATGAATCACGCCGTTCAGCTTATTGG
TTACGACCTTGTCAGTGGTCCAATCCCTTACTACATAGCGCGTAATCAAT
GGGGAAAATCTTTCGGTGAAGATGGTTACGTTCGAATCAAGTATGGTGAT
AACCAATGTGGTAGGTCTCCATACAAACTCGTCCCCAATTCCCCAGTTCG
TTTTTTACGGTTCTGATGGCGCGCTTGCGATTCCACAAAGGGTGACAGTA
TACTTTTTTAATGAGTAATTTTCTGACATTTCTGACAAAGCTCTTTTTgg
gggttgggggggggggcgagaACTTATTTAGGTGGGTAACATAACCTAGT
TacccattttttaattttggaaaaggGCAGGGTacatcagttccttttta
cgcTGAGTGCTTTGGCATAAATCAGGGGTTCAtttggaaaattaaaaaga
gTTTGGCTAGAACTTATTTTTGCGAAGCAACAACTCGCTAAACTCGCCGA
AATGAGTTCCAATAAGCtatcaaaaaatgatgaaattggtGTTTATACTT
TTCGTTCAGTGCTGAAGGTCCCAAAAAAAATCTATAAGGGGGGAGACTCC
CGATATTTAGCAAGGATATACTCTTCATCTCACAAACCTAGTTACCCATC
CCTCCAGGCACTGAAGTAACACACTAATCGTAAAATCAAATGTAATtccc
ttaagggaactaattttcgcggaacttTTCGCCCTTGGGTATCCCAGGCT
tcatttacgttactgattgacgccagagaatattatctagcgctttcagt
aagcataaaaaagctgataatacgcaagGAACGGGGCTGGTTCCCACata
aattagttcccttaaggttagcctatactagacgtcacccggtgtttagt
gaggtgctcgctacctTAAGGTAGTATGCAAATCAaagagtttttcattt
tcattttaggtATCGCTCAACAGCCTTCGTTTATCCAAGTCGTTTGATGA
GAAGGTAACAAAAAGTCCATGTACACACACAAGtaaatttatattttcga
aATTCGTGTTgaccaatttcttttttcaNGTATCGCTCAACAGCCTTCGT
TTATCCAAGTCGTTTGATGAGAAGGTAACAAAAAGTCCATGAACACACAC
AAGtaaatttatattttcgaaATTCGTGTTGACCAATTTCAccttctttt
ttcatttgacaGACATGACAGAACTTCAAGTTCGCCGTAAATTATTGAAC
ATATCtgaacatattcaatttttttctatccaaaattttatacgcatttt
ctattagatttttttttttaatttcatgtGAATTTCAATAGAgttttata
tcattttcaatTGATAACGcagttatttattttgttgtcGATTATACACT
CAGTAACCTCTCTTTAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007988	XLOC_007988	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000185	supercontig	sc0000185:172323..177941 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.63209	1.45852	0	0	0	0	0	0	0	0	0	0.516195	0.324502	2.08017	2.81821	0.8242	0.879117	7.96821e-05	1.41513	0.00112649	0.294938	0.463213	0	4.31346e-06	0.344846	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00014281 vs. Swiss-Prot (Human)
Match: CATO (Cathepsin O OS=Homo sapiens GN=CTSO PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.338e-41
Identity = 78/190 (41.05%), Postives = 109/190 (57.37%), Query Frame = 2

Query:    5 AFVGSEQIEMYWAIKTGTLVERSPQELLSCS-PSLGCEGGNTCLALQWLEKTRIVLETEKNYPYEEKDTACRQVNKTMEGPRVDAVCGCQNLVNREDAMLRILDQKGPLSVNVDAVQWHDYIGGIIQHHCTNKNMNHAVQLIGYDLVSGPIPYYIARNQWGKSFGEDGYVRIKYGDNQCGIAQQPSFIQV 571
            AF     +E  +AIK   L + S Q+++ CS  + GC GG+T  AL WL K ++ L  +  YP++ ++  C   + +  G  +       +  ++ED M + L   GPL V VDAV W DY+GGIIQHHC++   NHAV + G+D  +G  PY+I RN WG S+G DGY  +K G N CGIA   S I V
Sbjct:  134 AFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGY-SAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDK-TGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVSSIFV 321

The following BLAST results are available for this feature:

BLAST of TCONS_00014281 vs. Swiss-Prot (Human)

BLAST of TCONS_00014281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CATO	2.338e-41	41.05	Cathepsin O OS=Homo sapiens GN=CTSO PE=2 SV=1	[more]

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TCONS_00014281 (transcript) - C. hemisphaerica