TCONS_00014271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014271
Unique NameTCONS_00014271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014271 ID=TCONS_00014271|Name=TCONS_00014271|organism=Clytia hemisphaerica|type=transcript|length=1912bp
ACCGCAAACCacaaaaactcaatttttagaaCTCAGCTGCTCAAAAAACC
CATTTGCAAAGTAAAACTAATTTCAAAGTggcctttgaaaataaaaaatg
caatGAGATGGTAAGAATTGCTAGAGATTTACTTCACTAgaaaaaatgag
acaaaatgggTTTCGGACAAGCAAAAGTATCGAAAAataataatcagttt
ttatgGCTCAATCAAAACTATTATTTGATGAGACTTCTGTATCCTGAGAT
GAGCTCTGAGTTTCTTCATTGTCTTCATAATCTTTAGTGTAGTCTCTTTT
tgtatgataaattttgaagcatGGCTCAAAGCATAACGGAACATTGCAGT
CTGGGCAATGGTAACGTGTATCCTTACGGATTTTGCGTTTGGTGCATCTG
TGACACCTTTTTTGCGCGTTTAGTTTCTTATCGGTTGCAGGAAGGAAAGC
AAGAAAATGACGTTCAACCAGTCGAAGTAGGTTTGGTCCTGCATTGGGGC
CTCGATTTGGAGCTGCGGCACCGTGATGATGTCTGGTTATCAATTCTTCG
ATGacattaattttgaatttcaggTGGGTGTCGATCGCGTCATCGAAAAT
GACTTTCTTGTACACAAGATAGCTGTTGTACATAGCAATATCAATAAATA
ATTCCCCCAGCTTACGGTACCATTTCACCCCTCTTCTCTGGGATGAGTAG
GGGATTACAACTCTGCTCAAAAGATCTACCCCACCCATTGTGGAATTGTA
ATCGACAATGACATCAGGTTTGTATACTGCCTCTCCGGTACGGAAATTTC
TCTTTCCTGAATCAATGAGTTGGCCAGTATGAATCGTGGATAACATTGAC
AccactttttctttctttgttttggtcACATCATTCCACCTAAGGACCAT
CAAATCTccgttgaattttttttctggtggATTGCCTCTTACCGGACGCC
AATACCAGAAGTCGTATGGTAGATTTGCTTTCGCTCGCAAGGTACCGTAA
CAATCAGTATTGTAATTGAGAAGAATTTCTGCTATTTCTGGGGATGTATA
ATAATTATCCAGGGTTACACTATAGCCTTTCCCAAGAAGATCAGACAGTA
AGCTAAGGACAACTTTTAAAGGACTCTTTAGGTCCTCAAAGATAAATGGA
TTGTTGGCAGATTGTTCAGCAGGCTCAGTATAACTAGTTGTTGCCCCAGT
GTAAATAATAAAGTTCCAGAGATACCCACTAGAGCTTTCACAAAGCATGT
ATAATTTCACGCCATACCGTTCTCTTTTATTTGGTATATAAACTCGAAAA
GATAGGCGGCCTTTCCATAACGAAAGATACTCATCGATAGCCAATGCCTC
CTGCGGTACGTAATTTGCACGAAATTTTCCAACGAGGTACTCCATTGTCA
CGCGTAGTTTTCGAAGAGAGTCATCTTCCACTTCATCATCTGGTTTGGTG
AAGTGAATCATTTTACGAATTGCTTCAAAACGATCTCTGCGCATAAGTCT
TGGGAAAATTGGGGTCGAAAGCAAATGTCGTGTGGACCAATATAAGTTAT
ATTCTGGCTTTTTTATCACCCCCATAAGCATTAGAATTGCAATGTAAGTC
CACATTTCGTCTAATGTGACCGGTCTCCAGAGACGAAACAAGCTTCTCTC
TGTGTTTTCAATTCTCTCCTGGATCTCAGGGGTGTTTATCATTATTTCAG
CATAACTATTTGTAGCTTCAGCTATGTACTGAACAAGTTCATCGGAAAAA
AAAAGCTTGAATACTGCAATTGGTGTGAATTCATCCTCAGGAAAGTTTTT
AACGCCTTCACTACCAGTGAAGGGAAACCTCCTTCTTTGATTTCTTCCTT
CAGCCGTCCATGGATCCTCTGGTTCATCCCCACCATCTCCTTCACCGTTG
CCGTCTCCGCCA
Run BLAST on NCBI

transcript from alignment at sc0000185:4459..6370+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014271 ID=TCONS_00014271|Name=TCONS_00014271|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at sc0000185:4459..6370+ (Clytia hemisphaerica)
ACCGCAAACCacaaaaactcaatttttagaaCTCAGCTGCTCAAAAAACC
CATTTGCAAAGTAAAACTAATTTCAAAGTggcctttgaaaataaaaaatg
caatGAGATGGTAAGAATTGCTAGAGATTTACTTCACTAgaaaaaatgag
acaaaatgggTTTCGGACAAGCAAAAGTATCGAAAAataataatcagttt
ttatgGCTCAATCAAAACTATTATTTGATGAGACTTCTGTATCCTGAGAT
GAGCTCTGAGTTTCTTCATTGTCTTCATAATCTTTAGTGTAGTCTCTTTT
tgtatgataaattttgaagcatGGCTCAAAGCATAACGGAACATTGCAGT
CTGGGCAATGGTAACGTGTATCCTTACGGATTTTGCGTTTGGTGCATCTG
TGACACCTTTTTTGCGCGTTTAGTTTCTTATCGGTTGCAGGAAGGAAAGC
AAGAAAATGACGTTCAACCAGTCGAAGTAGGTTTGGTCCTGCATTGGGGC
CTCGATTTGGAGCTGCGGCACCGTGATGATGTCTGGTTATCAATTCTTCG
ATGacattaattttgaatttcaggTGGGTGTCGATCGCGTCATCGAAAAT
GACTTTCTTGTACACAAGATAGCTGTTGTACATAGCAATATCAATAAATA
ATTCCCCCAGCTTACGGTACCATTTCACCCCTCTTCTCTGGGATGAGTAG
GGGATTACAACTCTGCTCAAAAGATCTACCCCACCCATTGTGGAATTGTA
ATCGACAATGACATCAGGTTTGTATACTGCCTCTCCGGTACGGAAATTTC
TCTTTCCTGAATCAATGAGTTGGCCAGTATGAATCGTGGATAACATTGAC
AccactttttctttctttgttttggtcACATCATTCCACCTAAGGACCAT
CAAATCTccgttgaattttttttctggtggATTGCCTCTTACCGGACGCC
AATACCAGAAGTCGTATGGTAGATTTGCTTTCGCTCGCAAGGTACCGTAA
CAATCAGTATTGTAATTGAGAAGAATTTCTGCTATTTCTGGGGATGTATA
ATAATTATCCAGGGTTACACTATAGCCTTTCCCAAGAAGATCAGACAGTA
AGCTAAGGACAACTTTTAAAGGACTCTTTAGGTCCTCAAAGATAAATGGA
TTGTTGGCAGATTGTTCAGCAGGCTCAGTATAACTAGTTGTTGCCCCAGT
GTAAATAATAAAGTTCCAGAGATACCCACTAGAGCTTTCACAAAGCATGT
ATAATTTCACGCCATACCGTTCTCTTTTATTTGGTATATAAACTCGAAAA
GATAGGCGGCCTTTCCATAACGAAAGATACTCATCGATAGCCAATGCCTC
CTGCGGTACGTAATTTGCACGAAATTTTCCAACGAGGTACTCCATTGTCA
CGCGTAGTTTTCGAAGAGAGTCATCTTCCACTTCATCATCTGGTTTGGTG
AAGTGAATCATTTTACGAATTGCTTCAAAACGATCTCTGCGCATAAGTCT
TGGGAAAATTGGGGTCGAAAGCAAATGTCGTGTGGACCAATATAAGTTAT
ATTCTGGCTTTTTTATCACCCCCATAAGCATTAGAATTGCAATGTAAGTC
CACATTTCGTCTAATGTGACCGGTCTCCAGAGACGAAACAAGCTTCTCTC
TGTGTTTTCAATTCTCTCCTGGATCTCAGGGGTGTTTATCATTATTTCAG
CATAACTATTTGTAGCTTCAGCTATGTACTGAACAAGTTCATCGGAAAAA
AAAAGCTTGAATACTGCAATTGGTGTGAATTCATCCTCAGGAAAGTTTTT
AACGCCTTCACTACCAGTGAAGGGAAACCTCCTTCTTTGATTTCTTCCTT
CAGCCGTCCATGGATCCTCTGGTTCATCCCCACCATCTCCTTCACCGTTG
CCGTCTCCGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007984XLOC_007984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014271-exon-sc0000185-1491911889:4459..6370TCONS_00014271-exon-sc0000185-1491911889:4459..6370Clytia hemisphaericaexon
TCONS_00014271-exon-sc0000185-1510915933:4459..6370TCONS_00014271-exon-sc0000185-1510915933:4459..6370Clytia hemisphaericaexon
TCONS_00014271-exon-sc0000185-1575043694:4459..6370TCONS_00014271-exon-sc0000185-1575043694:4459..6370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:4459..6370 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417461	0.464874	0.709288	0.701878	1.41414	0.860042	0.58624	0.784821	0.500028	0.787582	0.65525	0.777342	0.584634	0.661875	0.610228	0.40068	0.369056	0.935957	0.929912	0.75221	0.910728	1.20497	0.39389	0.30626	0.369007	0.228702	1.1769	0.99023	1.03103	1.00789
Blast
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BLAST of TCONS_00014271 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3)

HSP 1 Score: 312.383 bits (799), Expect = 6.558e-97
Identity = 192/539 (35.62%), Postives = 296/539 (54.92%), Query Frame = -2 
Query:  289 WTAEGRNQRRRFPFTGSEGVKNFPEDEFTPIAVFKLFFSDELVQYIAEATNSYAEIMINTPEIQERIENTERSLFRLWRPVTLDEMWTYIAILMLMGVIKKPEYNLYWSTRHLLSTPIFPRLMRRDRFEAIRKMIHFT-----KPDDEVEDDSLRKLRVTMEYLVGKFRANYVPQEALAIDEYLSLWKGRLSFRVYIPNKRERYGVKLYMLCESSSGYLWNFIIYTGATTSYTEPAEQSANNPFIFEXXXXXXXXXXXXXXXXXXXGYSVTLDNYYTSPEIAEILLNYNTDCYGTLRA-KANLPYDFWYWRPVRGNPPEKKFNGDLMVLRWNDVTKTKKEKVVSMLSTIHTGQLIDSGKRNFRTGEAVYKPDVIVDYNSTMGGVDLLSRVVIPYSSQRRGVK-WYRKLGELFIDIAMYNSYLVYKKVIFDDAIDTHLKFKINVIEELITRHHHXXXXXXXXXXXXXNL--LRLVERHFLAFLPATDKKLNAQKRCHRCTK------RKIRKDTRYHCPDCNVPLCFEPCFKIYHTKRDY 1860
            W+A     R+R+ FTG+ G K    D   P+  F+LFF++ELV  I   TN+ A ++ + P   +     ++     W+    DE+  + A+++L G+++KPE  ++WSTR LL TP   ++M  +RF  + + +HF               SL+K++   ++LV KF   Y P   +A+DE L L+KG L+ + Y+P KR R+G+KLY+LCES SGY+WN +++TG   +  + A+   ++  +            +L++DLLG+GY V LDN+  SP +   L    TD  GT R  +  +P D    R  +G     +F G+LM L+W D       K V+MLST H   +I+   RN   G+   +P VIVDYN  MG VD   +++  Y S+R+  K WY+K     + I + NSY+++KK   +  + +H+ F++ +IE ++ +HH       RG     ++  LRL  RHF   +PAT  K N   RC  C        +KIRK+TRY C +C+VPLC  PCF+IYHTK++Y
Sbjct:   75 WSARAMIPRQRYDFTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDK-----WKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLKSSRIVL-----------TLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDL-KKRIAKGT-TVARFCGELMALKWCD------GKEVTMLSTFHNDTVIEVNNRN---GKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNPEHTM-SHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFPKSIPATSGKQNPTGRCKICCSQYDKDGKKIRKETRYFCAECDVPLCVVPCFEIYHTKKNY 585
The following BLAST results are available for this feature:
BLAST of TCONS_00014271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGBD46.558e-9735.62PiggyBac transposable element-derived protein 4 OS... [more]
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