TCONS_00014263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014263
Unique NameTCONS_00014263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014263 ID=TCONS_00014263|Name=TCONS_00014263|organism=Clytia hemisphaerica|type=transcript|length=563bp
AGACCCTCAGATTACAATTCATAATGGCAGCATCAAACAACACACGATTC
TGGTTTGAATGCAGGATCACCAATGCTTTCTACACTTTCACACAACCATA
CACTGGTATCATGCTTTCTGCTGCATTAATTGCACTAGTGCTCAGTCCTC
TCATCATTTGCTCAAACTTCTTCATCATCCTGGCAATCTTTCGAAAACAA
CATCTTCGGATTTCATCCAATGTTTTACTTGTAAGCACAGCAGTGAGTGA
TTTATGCGTTGGATTGCTAAGCATACCGTGTTTTGTGGCAAATTTCTTCA
TGGCGTTTCAAGAGCAATACCAGTGTGTTTTCTACACCATCCAAATCGGA
TTTGTACATTACTTTTCACTGATATCCTTCCTCCTTGTTTTAATGATTGC
TGTTGATCGAGTTGTGGCTGTTTACAAACCCTTTTTCTATCACGATAATA
TTACAGCACATTGGCAAAACTATGTATATTTAACATCCTTGATATGGCtt
gctttatttttcatgattgtcTTAGTGAtttgtgtgccagcttggttCGT
ACTTTTATACACA
Run BLAST on NCBI

protein sequence of TCONS_00014263-protein

>TCONS_00014263-protein ID=TCONS_00014263-protein|Name=TCONS_00014263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
TLRLQFIMAASNNTRFWFECRITNAFYTFTQPYTGIMLSAALIALVLSPL
IICSNFFIILAIFRKQHLRISSNVLLVSTAVSDLCVGLLSIPCFVANFFM
AFQEQYQCVFYTIQIGFVHYFSLISFLLVLMIAVDRVVAVYKPFFYHDNI
TAHWQNYVYLTSLIWLALFFMIVLVICVPAWFVLLYT
Run BLAST on NCBI

transcript from alignment at sc0000183:231062..231624

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014263 ID=TCONS_00014263|Name=TCONS_00014263|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at sc0000183:231062..231624 (Clytia hemisphaerica)
TGTGTATAAAAGTACGaaccaagctggcacacaaaTCACTAAgacaatca
tgaaaaataaagcaaGCCATATCAAGGATGTTAAATATACATAGTTTTGC
CAATGTGCTGTAATATTATCGTGATAGAAAAAGGGTTTGTAAACAGCCAC
AACTCGATCAACAGCAATCATTAAAACAAGGAGGAAGGATATCAGTGAAA
AGTAATGTACAAATCCGATTTGGATGGTGTAGAAAACACACTGGTATTGC
TCTTGAAACGCCATGAAGAAATTTGCCACAAAACACGGTATGCTTAGCAA
TCCAACGCATAAATCACTCACTGCTGTGCTTACAAGTAAAACATTGGATG
AAATCCGAAGATGTTGTTTTCGAAAGATTGCCAGGATGATGAAGAAGTTT
GAGCAAATGATGAGAGGACTGAGCACTAGTGCAATTAATGCAGCAGAAAG
CATGATACCAGTGTATGGTTGTGTGAAAGTGTAGAAAGCATTGGTGATCC
TGCATTCAAACCAGAATCGTGTGTTGTTTGATGCTGCCATTATGAATTGT
AATCTGAGGGTCT

Coding sequence (CDS) from alignment at sc0000183:231062..231624

>TCONS_00014263 ID=TCONS_00014263|Name=TCONS_00014263|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000183:231062..231624 (Clytia hemisphaerica)
TGTGTATAAAAGTACGaaccaagctggcacacaaaTCACTAAgacaatca
tgaaaaataaagcaaGCCATATCAAGGATGTTAAATATACATAGTTTTGC
CAATGTGCTGTAATATTATCGTGATAGAAAAAGGGTTTGTAAACAGCCAC
AACTCGATCAACAGCAATCATTAAAACAAGGAGGAAGGATATCAGTGAAA
AGTAATGTACAAATCCGATTTGGATGGTGTAGAAAACACACTGGTATTGC
TCTTGAAACGCCATGAAGAAATTTGCCACAAAACACGGTATGCTTAGCAA
TCCAACGCATAAATCACTCACTGCTGTGCTTACAAGTAAAACATTGGATG
AAATCCGAAGATGTTGTTTTCGAAAGATTGCCAGGATGATGAAGAAGTTT
GAGCAAATGATGAGAGGACTGAGCACTAGTGCAATTAATGCAGCAGAAAG
CATGATACCAGTGTATGGTTGTGTGAAAGTGTAGAAAGCATTGGTGATCC
TGCATTCAAACCAGAATCGTGTGTTGTTTGATGCTGCCATTATGAATTGT
AATCTGAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007976XLOC_007976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014263-exon-sc0000183-1491911889:231062..231624TCONS_00014263-exon-sc0000183-1491911889:231062..231624Clytia hemisphaericaexon
TCONS_00014263-exon-sc0000183-1510915933:231062..231624TCONS_00014263-exon-sc0000183-1510915933:231062..231624Clytia hemisphaericaexon
TCONS_00014263-exon-sc0000183-1575043694:231062..231624TCONS_00014263-exon-sc0000183-1575043694:231062..231624Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014263-proteinTCONS_00014263-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:231062..231624 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.135152	0	0.515393	0.120626	0.168906	0.313827	0	0.266983	0.533223	0.761417	0	0.122142	0.902814	0.385565	1.81111	1.78371	0.581388	0.425371	0.344729	0	0.430405	0.384127	0	0.146659	0	1.13332
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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