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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014160 ID=TCONS_00014160|Name=TCONS_00014160|organism=Clytia hemisphaerica|type=transcript|length=1400bp
ATGGGAGTAAATGATTACATATTTTCATCATTGTATGCTGTCTTGTTTTT
GATTGGATTTTTTGGGAATATTATCGTCATCTTTTATTACGGTTTTATTC
AGAGACGATCGTCGAACGCTcatcaagttttgaaaatacATTTAGCATTG
GCTGATCTTCTGGTCTGTACTTTTGTTCCTGTTCATATGTATGAAGATTA
CGTATTGAAAAGACACATACAGAATACTGTTTATCGTTACGTAACGGCTA
TTCCGATGTATGTAGCAGTGACGGTATCCGCTTGGGTTATGTGTTGCATG
TCTTACGAACGTTACCGTAAAATCACACGCCCGTTTGCGGAACCCATCTC
CAAAACGAAAGTATGTTTAGTATGCGCTTGTTTATGGTTGATTTGTATGC
CACTGGGTTTCGAAGGTGTTTTAGAGATTGAAATGCCGGAACTTTTGAAC
GACCggactttcttttattttcatataGTGTTATTGTTTATCGAGTGTAT
TTTCCCTATCTTATTTATGACGTGGTGTTATAGAAAGATCGAGAAAACAG
TACGTACGGCCTGGGTTACTCTACGTATACGACGACAACAGAATGAAATT
GCTCTTAAAACGCTGAAACATTTGGTATGGGTTTTCGCCGTGTGCGTAAC
ACCAGGACgttttcttctggttgttctcAACGTTGTTGCGGGATGGACGC
TAGCAAATCGACGTAGTGTAGCGTTGACGTATTCGATCCAATTCGCAGGG
TTCTTATTCTACATAAACAACGCCGTAAACTGTCTTATTTACGTCTCACA
GGACAAAAAATTCCGTTATTGGTTGTCAAGACAAAAAGAAATGAGGCGCC
GTTTCTCTATATTTCGTAAAAATCTTGACCGTAAAGACATGGAGGAGTTA
CATATGATTGCGCTCATGATGGGGCGCCGTCGTGATAAGAAATCCAGTGA
GGACAACACGACAATGTCTTTGAAGTCGTTTGTGAAAAAAACAAGTAGAG
GATCTTATGATTCGGCTGCAAAGAGGTTGAGTAGGAATTCTTTTGAAACA
ACCAAAAGGATGAGTGTGACTTCTTCTGATACTAAAGCATTGAAAGAAGA
AATCTCGGTAGAAATATGATTATAAGCAAAAATTGTACCCAGAACCTTAG
TTCGTGTTTTCATGATTTGGAATTATTGTCATCATTAACATAAAAAAACG
CAACGTATTTCGTCTGGAGGTACTGGGTtggcctatactagacgtcaccc
gcgtttttttacgcaattactgtaacgtctattccactttgcgacttttt
cgaatcttttgagcccgggttttcgggctctaaacattcgattttttgac
gtcacttttaactttcgaagctcctgcagtagcaaaaaaatcgaatttgc Run BLAST on NCBI protein sequence of TCONS_00014160-protein >TCONS_00014160-protein ID=TCONS_00014160-protein|Name=TCONS_00014160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MGVNDYIFSSLYAVLFLIGFFGNIIVIFYYGFIQRRSSNAHQVLKIHLAL
ADLLVCTFVPVHMYEDYVLKRHIQNTVYRYVTAIPMYVAVTVSAWVMCCM
SYERYRKITRPFAEPISKTKVCLVCACLWLICMPLGFEGVLEIEMPELLN
DRTFFYFHIVLLFIECIFPILFMTWCYRKIEKTVRTAWVTLRIRRQQNEI
ALKTLKHLVWVFAVCVTPGRFLLVVLNVVAGWTLANRRSVALTYSIQFAG
FLFYINNAVNCLIYVSQDKKFRYWLSRQKEMRRRFSIFRKNLDRKDMEEL
HMIALMMGRRRDKKSSEDNTTMSLKSFVKKTSRGSYDSAAKRLSRNSFET
TKRMSVTSSDTKALKEEISVEI Run BLAST on NCBI transcript from alignment at sc0000181:204542..205941 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014160 ID=TCONS_00014160|Name=TCONS_00014160|organism=Clytia hemisphaerica|type=transcript|length=1400bp|location=Sequence derived from alignment at sc0000181:204542..205941 (Clytia hemisphaerica)
gcaaattcgatttttttgctactgcaggagcttcgaaagttaaaagtgac
gtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaagattcg
aaaaagtcgcaaagtggaatagacgttacagtaattgcgtaaaaaaacgc
gggtgacgtctagtataggccaACCCAGTACCTCCAGACGAAATACGTTG
CGTTTTTTTATGTTAATGATGACAATAATTCCAAATCATGAAAACACGAA
CTAAGGTTCTGGGTACAATTTTTGCTTATAATCATATTTCTACCGAGATT
TCTTCTTTCAATGCTTTAGTATCAGAAGAAGTCACACTCATCCTTTTGGT
TGTTTCAAAAGAATTCCTACTCAACCTCTTTGCAGCCGAATCATAAGATC
CTCTACTTGTTTTTTTCACAAACGACTTCAAAGACATTGTCGTGTTGTCC
TCACTGGATTTCTTATCACGACGGCGCCCCATCATGAGCGCAATCATATG
TAACTCCTCCATGTCTTTACGGTCAAGATTTTTACGAAATATAGAGAAAC
GGCGCCTCATTTCTTTTTGTCTTGACAACCAATAACGGAATTTTTTGTCC
TGTGAGACGTAAATAAGACAGTTTACGGCGTTGTTTATGTAGAATAAGAA
CCCTGCGAATTGGATCGAATACGTCAACGCTACACTACGTCGATTTGCTA
GCGTCCATCCCGCAACAACGTTgagaacaaccagaagaaaacGTCCTGGT
GTTACGCACACGGCGAAAACCCATACCAAATGTTTCAGCGTTTTAAGAGC
AATTTCATTCTGTTGTCGTCGTATACGTAGAGTAACCCAGGCCGTACGTA
CTGTTTTCTCGATCTTTCTATAACACCACGTCATAAATAAGATAGGGAAA
ATACACTCGATAAACAATAACACtatatgaaaataaaagaaagtccGGTC
GTTCAAAAGTTCCGGCATTTCAATCTCTAAAACACCTTCGAAACCCAGTG
GCATACAAATCAACCATAAACAAGCGCATACTAAACATACTTTCGTTTTG
GAGATGGGTTCCGCAAACGGGCGTGTGATTTTACGGTAACGTTCGTAAGA
CATGCAACACATAACCCAAGCGGATACCGTCACTGCTACATACATCGGAA
TAGCCGTTACGTAACGATAAACAGTATTCTGTATGTGTCTTTTCAATACG
TAATCTTCATACATATGAACAGGAACAAAAGTACAGACCAGAAGATCAGC
CAATGCTAAATgtattttcaaaacttgatgAGCGTTCGACGATCGTCTCT
GAATAAAACCGTAATAAAAGATGACGATAATATTCCCAAAAAATCCAATC
AAAAACAAGACAGCATACAATGATGAAAATATGTAATCATTTACTCCCAT
Coding sequence (CDS) from alignment at sc0000181:204542..205941 >TCONS_00014160 ID=TCONS_00014160|Name=TCONS_00014160|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at sc0000181:204542..205941 (Clytia hemisphaerica)
TCATATTTCTACCGAGATTTCTTCTTTCAATGCTTTAGTATCAGAAGAAG
TCACACTCATCCTTTTGGTTGTTTCAAAAGAATTCCTACTCAACCTCTTT
GCAGCCGAATCATAAGATCCTCTACTTGTTTTTTTCACAAACGACTTCAA
AGACATTGTCGTGTTGTCCTCACTGGATTTCTTATCACGACGGCGCCCCA
TCATGAGCGCAATCATATGTAACTCCTCCATGTCTTTACGGTCAAGATTT
TTACGAAATATAGAGAAACGGCGCCTCATTTCTTTTTGTCTTGACAACCA
ATAACGGAATTTTTTGTCCTGTGAGACGTAAATAAGACAGTTTACGGCGT
TGTTTATGTAGAATAAGAACCCTGCGAATTGGATCGAATACGTCAACGCT
ACACTACGTCGATTTGCTAGCGTCCATCCCGCAACAACGTTgagaacaac
cagaagaaaacGTCCTGGTGTTACGCACACGGCGAAAACCCATACCAAAT
GTTTCAGCGTTTTAAGAGCAATTTCATTCTGTTGTCGTCGTATACGTAGA
GTAACCCAGGCCGTACGTACTGTTTTCTCGATCTTTCTATAACACCACGT
CATAAATAAGATAGGGAAAATACACTCGATAAACAATAACACtatatgaa
aataaaagaaagtccGGTCGTTCAAAAGTTCCGGCATTTCAATCTCTAAA
ACACCTTCGAAACCCAGTGGCATACAAATCAACCATAAACAAGCGCATAC
TAAACATACTTTCGTTTTGGAGATGGGTTCCGCAAACGGGCGTGTGATTT
TACGGTAACGTTCGTAAGACATGCAACACATAACCCAAGCGGATACCGTC
ACTGCTACATACATCGGAATAGCCGTTACGTAACGATAAACAGTATTCTG
TATGTGTCTTTTCAATACGTAATCTTCATACATATGAACAGGAACAAAAG
TACAGACCAGAAGATCAGCCAATGCTAAATgtattttcaaaacttgatgA
GCGTTCGACGATCGTCTCTGAATAAAACCGTAATAAAAGATGACGATAAT
ATTCCCAAAAAATCCAATCAAAAACAAGACAGCATACAATGATGAAAATA
TGTAATCATTTACTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014160-exon-sc0000181-1491911889:204542..205941 | TCONS_00014160-exon-sc0000181-1491911889:204542..205941 | Clytia hemisphaerica | exon |
| TCONS_00014160-exon-sc0000181-1510915933:204542..205941 | TCONS_00014160-exon-sc0000181-1510915933:204542..205941 | Clytia hemisphaerica | exon |
| TCONS_00014160-exon-sc0000181-1575043694:204542..205941 | TCONS_00014160-exon-sc0000181-1575043694:204542..205941 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:204542..205941 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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