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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014125 ID=TCONS_00014125|Name=TCONS_00014125|organism=Clytia hemisphaerica|type=transcript|length=703bp
CAAAAACGCAGATACACTGTTTTGTCATTGGTATGACAGCATGTAGTCCA
TTTACTATCAAGGAAACGTAAGGAGTATCTTTGTCTCGATTTCGTTTCTC
AGATCTTAGAATTTTTGACATTGAATATTTCAGGTTGATTATCACTTATG
AGATATTTTGGTTGTTCAAATACATAAGAGAGCTGAGATTTTTAAACTAT
ACAGAATTCTTAATTACAGTAATTCGTATAAGTTGCTTTTTTATCCGAGA
ATGATTTCAAAAGCTATCTATCTATTGCTCGTCCAATTATTGCTGCTCAA
TGGTGAATCCTTGGCAATCAAATGTTATATTGGTGAAAATGACGTAATAG
ACTGTTCACATGGAGGTACTTCAGATGTTTGTGGTGTTCAAACTATAGTC
ACCAATGGTCTGTATGGTCAAACACTCCGAACGCCAATGTGCGTTCCAAT
GGCAACAGAATCAATGTGTTACCAGAATCAACAGGTGACAGACTATATGA
GTACCAAGTTTTGTTGCTGCAAAAGTGACTTTTGTAACAATGAAGAATTT
GCAAACGCCTGCAACCCTGGAACAACCTCGAGAACAACAACACTCGCACC
CAGACCCTGGCCCACATCCTCGGCCGATTCATTCAAATGTCAGTACAGTG
TACAATCGACTGGATTCGGTGAAGGACTGGACACAAACTTAAATGCCGGT
GAA Run BLAST on NCBI protein sequence of TCONS_00014125-protein >TCONS_00014125-protein ID=TCONS_00014125-protein|Name=TCONS_00014125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MISKAIYLLLVQLLLLNGESLAIKCYIGENDVIDCSHGGTSDVCGVQTIV
TNGLYGQTLRTPMCVPMATESMCYQNQQVTDYMSTKFCCCKSDFCNNEEF
ANACNPGTTSRTTTLAPRPWPTSSADSFKCQYSVQSTGFGEGLDTNLNAG
E Run BLAST on NCBI transcript from alignment at sc0000181:61275..66211- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014125 ID=TCONS_00014125|Name=TCONS_00014125|organism=Clytia hemisphaerica|type=transcript|length=4937bp|location=Sequence derived from alignment at sc0000181:61275..66211- (Clytia hemisphaerica)
CAAAAACGCAGATACACTGTTTTGTCATTGGTATGACAGCATGTAGTCCA
TTTACTATCAAGGAAACGTAAGGAGTATCTTTGTCTCGATTTCGTTTCTC
AGATCTTAGAATTTTTGACATTGAATATTTCAGGTTGATTATCACTTATG
AGATATTTTGGTTGTTCAAATACATAAGAGAGCTGAGATTTTTAAACTAT
ACAGAATTCTTAATTACAGTAATTCGTATAAGTTGCTTTTTTATCCGAGA
ATGATTTCAAAAGCTATCTATCTATTGCTCGTCCAATTATTGCTGCTCAA
TGGTGAATCCTTGGCAATCAAATGTTATATTGGTGAAAATGACGTAATAG
ACTGTTCACATGGAGGTGAGTTGTACAATATGTAATAGTTATCGGACAGT
TGCGAGTACAATATGAGAAATATTTTACGAGTTCCGAGATTTTTCCGTAC
AATATTTTCCGAGCCTATAGGCGAGGAAAATATACGGAAAATCCGGAACG
AGTGAAATATTTCCATATTGTACGAGCAAATTTCTGATAACTGGTTTATC
GGTGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTTTTCGTCAAT
TTATATTTTTACATGTAAAATACAAGATATATTGTACTCTTTTTAACCAA
TCAGATTGCAGATATTTTTTGGATCGCCGATAATGTATATTAAATATACA
CTCGGTCTGGAAAAAGCAGAACCAATTGTGCATAAATAAAATCCATACAA
TAGACCTTATCGCAGTTTTTTATTTTTCTAAAAAAGCGATGCATTGTGGG
ATTATTACAATAGAAATCTCTTAGGAATTCCTCGAGCGAATTCTATTGTA
ATACACTCGAAACTATCCCACAATGGATCGCTTTTTTAGAAAAATCAAAA
ACTTCGATAAGGTCTATTACAGGGTGTCTCGAAAAAAAAGTCCTGTGTTA
GAACAGGACTATAATAAGTCGTGTATGTATGTCGAAAATTGATATTCACG
TGTTTTAATACAATGCAACCGTTGTAATGTTCTTTACTTTTTTGGAAAGA
GACGTTCATAAGAATGCTTTATTGGGCTTTTCAAGAAAAAAATTGAATAT
GTGGGGTGGAGGATATAACAATTTTCAGTGATTTACCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCCCC
CCCCCCCCCCCATATACGGACATTTTCCGGAAGAGCCTATTACTGTTTTG
TGTTACAGGGAGAATCTAGACAAACACACACAAAGATTTTTCTACTTTCA
GTCATATTCTGACACAGGACGTTTATCTGGGATACCCGTATAGATCATTC
TCATTACCCATTTGATTGATTTCTTAGTTAGGGTAGATTTTTCGAGACCC
TTGAAATGCACTGCTGAATTGCAATTCTGACAGTAAAAGCATAGGCGAAG
CGAGATACGCTGCAAAATTTATGAGGCCCCTTATGAGGGAGTGCAGACGT
TTATGAAATATTCATTATCTTTTGGTAAAACAAAGACAATAATTACAGTG
TCGTGAAAAACCACTTTCGTCCATAAATTTTGCAGGGTATCTCGCTACGG
CTAAGTCTGATGTATCTTTGGTAGTTTTGACTCGCATCCATTTTGATTTG
TTTTGCACATAGTGTCGACTTTGATAAAATTCACATCCTCCTAGATTTTC
ATGTCTGTTCGCTAAGCAAATTGTTCCTGGATTTTCTCCCTAAAATCTCT
CTCCTGGAAAAATAGTACAGACATTTGACAAATATCCGTTGTTGGCTGCT
CTTGAAATATTTGTAAGATTTAATTTTTCTTTCAATAGAATATCTATTGA
TTGAACAGAAAAAAAGTTAATCTTATTTTGATAATTTATCATAAGTCCAG
TTTTGATGATGAGTTCTTTGGATTTTACTCTGTATAAAAATTCGTCCCTT
TTTTTTTGGACACCCTGTATATATTTCGCCCTTCTTGGAACTCTTAAGCG
GGTCTTAAGCACTGCGCACTGTATTACTGCAGATCGAATTAGCAACTGTT
CCTGTAAACAGGACCTACTTGTGGAAGTTCTTATATAACCTTACGTATCT
GATACCGAGACCATAAACTNATGACGTATGCCACGTATATCCACTCCAAG
GCATTGTTTAATCCTTAAGAATTTATTTTCTTAAATATAATATATTAACA
TATTCTATAACACATATTACTTCAGAGTTTCCCGGTCAAATAATAGTTGT
CTAAATCAAACTTCTTTGTTTTACTTTTCTTAACCCTTTTAACCTGGGGG
GGGGGGTAGAATCTACCACCCTCGATTATTTTCGATCTAGAAGAGCTATG
GCCATGAAATCTGGTACAGATGTTCTCCATCATGATATAATTTTTTCAGG
ACGAAAAAAAAAATTGATAACGTCATTCAAAAACCGATGACGTCATCACA
AAATTTCCATCTAAAATGATTTGATAAAAAGTTTAGAAGTTATCAGCACT
TTCAAATTTTGAGTTTTAAGCGATTTTAGCTGGGTTTTATGTCATGTTTC
ACAATAAAGTCATAAAACCTGATCTGGACAACCTATGACCCTAAAGTTTT
GCACAAGTACTCTTAATAAGATTTTATTAAAAGTCAGAAAGTTTCAAGTC
GTTAAAAATAATTTTCTCCGAGATATAAACAAAAGAACTCCAGCGTGGTA
GATTCTACCCCCCCTGGGGCTAATAGGGTTAACACTCACTAAATAGGGTA
GATCCAATGGGCCTTAGCGACCCCTAAGATGACTACATTTTTTGTTTGTC
CTCAGGTACTTCAGATGTTTGTGGTGTTCAAACTATAGTCACCAATGGTC
TGTATGGTCAAACACTCCGAACGCCAATGTGCGTTCCAATGGCAACAGAA
TCAATGTGTTACCAGAATCAACAGGTGACAGACTATATGAGTACCAAGGT
AAGTTCATAGCTCGAGATAGCAAAATTTTCAGACCATGGTTCTAACCTTT
TTCTTAATCAGCATAGAATTTCTGATCGATTGGTATAGTATGCAGGGTTT
TAAGCTCAAAAAAATATTTTTCTTAGGTTAGCAGAGCCTAATAGCCCATG
TGACGAAAGAAAGTTTTGAATCCACCATTATGGATTTCGAAATTCATGTA
GAAAAAAAAATTTTCCTGAATTTTATTATTTGAACGGTAGGCAAAACCCT
CCGAAAATTTCAAGTAAATTAAGTAAGCCAATCAAATGTTACAGTCACGC
AAATCTGGAACCAAAAGTAATCATTTCAAAAAATCGAAATCGAAAGTGCT
TCATATCTCCAGATAACAAAACTTTCAGACCATGATTCTGACCTTTTTCT
TAATCAGCATAAAATTTGTGATCGATTGGTATATAATATGTCTATGTTTA
AAGTCAAAAAAGGGTTTTCAAGCAAGAGGGCTAAAAAGGGTTGAAAATCT
AAAATCCGCCATTATGGAAATTTGTGCCTGATCCAAATAACGCCACACAC
GTTTTCTGACTCTTCAAGGACTATACTTTCATGATCAAAAGAAAAAATGA
CTATACGCCGATGTGCATACGAGACCTAACTCAGCCCCTAGAGTATGACT
GTTGTAACAACAATTATTGTGTTGGTATATATTTTCTCACATTTTGTTAC
GTAGTCGAACGTGCGCAACGCACCGGACTTAACTTCAGTGCCTTCAAACT
ATTCATAAGCCAAATTGTAGACCCCCAGATATTCACCCAAGGAACAAGTG
TGCAAAATTTCAGCCAAATCGAACAACTTTTGAAGTCTCCAGGCTGCCCC
AAAGTTTTAGCCTCGTTTTGGCAAAAAACTCGTCCCCAGGCCCCAAAAAT
CAAAATTTTTGAAAAATAAAAACAAAACCCCCAGATATTCCCCCAAGGAA
CAAGTGTGCAAAATTTCAGCCAAATCGAACAATTTTTGAAGTCTCGAGGC
TGCCCCAAAGTTTTGGGACATACACACAGACAGACAGACACACCGACAGA
CATTCTCAGATTCTAGCTCAACTGAAGTTGAGAACACGCAACAAAATCAA
AAAAGAAAAAAGACCAATACGCATCCCCTATATCAAATCATATCAGAGGG
GATGCGTGCAGCCTATTGCATTATATATGGGTCTAAGATTTCGCCTGGAT
ACGTAAGTTCTATAAAGTTCTATCTTATGCTTCTTTATCCAGTTTTGTTG
CTGCAAAAGTGACTTTTGTAACAATGAAGAATTTGCAAACGCCTGCAACC
CTGGAACAACCTCGAGAACAACAACACTCGCACCCAGACCCTGGCCCACA
TCCTCGGCCGATTCATTCAAATGTCAGTACAGTGTACAATCGACTGGATT
CGGTGAAGGACTGGACACAAACTTAAATGCCGGTGAA Coding sequence (CDS) from alignment at sc0000181:61275..66211- >TCONS_00014125 ID=TCONS_00014125|Name=TCONS_00014125|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000181:61275..66211- (Clytia hemisphaerica)
TTTTGTTGCTGCAAAAGTGACTTTTGTAACAATGAAGAATTTGCAAACGC
CTGCAACCCTGGAACAACCTCGAGAACAACAACACTCGCACCCAGACCCT
GGCCCACATCCTCGGCCGATTCATTCAAATGTCAGTACAGTGTACAATCG
ACTGGATTCGGTGAAGGACTGGACACAAACTTAAATGCCGGTGAAGTACT
TCAGATGTTTGTGGTGTTCAAACTATAGTCACCAATGGTCTGTATGGTCA
AACACTCCGAACGCCAATGTGCGTTCCAATGGCAACAGAATCAATGTGTT
ACCAGAATCAACAGGTGACAGACTATATGAGTACCAAGATGATTTCAAAA
GCTATCTATCTATTGCTCGTCCAATTATTGCTGCTCAATGGTGAATCCTT
GGCAATCAAATGTTATATTGGTGAAAATGACGTAATAGACTGTTCACATG
GAGTTTTGTTGCTGCAAAAGTGACTTTTGTAACAATGAAGAATTTGCAAA
CGCCTGCAACCCTGGAACAACCTCGAGAACAACAACACTCGCACCCAGAC
CCTGGCCCACATCCTCGGCCGATTCATTCAAATGTCAGTACAGTGTACAA
TCGACTGGATTCGGTGAAGGACTGGACACAAACTTAAATGCCGGTGAAGT
ACTTCAGATGTTTGTGGTGTTCAAACTATAGTCACCAATGGTCTGTATGG
TCAAACACTCCGAACGCCAATGTGCGTTCCAATGGCAACAGAATCAATGT
GTTACCAGAATCAACAGGTGACAGACTATATGAGTACCAAGATGATTTCA
AAAGCTATCTATCTATTGCTCGTCCAATTATTGCTGCTCAATGGTGAATC
CTTGGCAATCAAATGTTATATTGGTGAAAATGACGTAATAGACTGTTCAC
ATGGAGTTTTGTTGCTGCAAAAGTGACTTTTGTAACAATGAAGAATTTGC
AAACGCCTGCAACCCTGGAACAACCTCGAGAACAACAACACTCGCACCCA
GACCCTGGCCCACATCCTCGGCCGATTCATTCAAATGTCAGTACAGTGTA
CAATCGACTGGATTCGGTGAAGGACTGGACACAAACTTAAATGCCGGTGA
AGTACTTCAGATGTTTGTGGTGTTCAAACTATAGTCACCAATGGTCTGTA
TGGTCAAACACTCCGAACGCCAATGTGCGTTCCAATGGCAACAGAATCAA
TGTGTTACCAGAATCAACAGGTGACAGACTATATGAGTACCAAGATGATT
TCAAAAGCTATCTATCTATTGCTCGTCCAATTATTGCTGCTCAATGGTGA
ATCCTTGGCAATCAAATGTTATATTGGTGAAAATGACGTAATAGACTGTT
CACATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014125-exon-sc0000181-1575043694:65847..66211 | TCONS_00014125-exon-sc0000181-1575043694:65847..66211 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1575043694:62714..62856 | TCONS_00014125-exon-sc0000181-1575043694:62714..62856 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1575043694:61275..61469 | TCONS_00014125-exon-sc0000181-1575043694:61275..61469 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1510915933:65847..66211 | TCONS_00014125-exon-sc0000181-1510915933:65847..66211 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1510915933:62714..62856 | TCONS_00014125-exon-sc0000181-1510915933:62714..62856 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1510915933:61275..61469 | TCONS_00014125-exon-sc0000181-1510915933:61275..61469 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1491911889:65847..66211 | TCONS_00014125-exon-sc0000181-1491911889:65847..66211 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1491911889:62714..62856 | TCONS_00014125-exon-sc0000181-1491911889:62714..62856 | Clytia hemisphaerica | exon |
| TCONS_00014125-exon-sc0000181-1491911889:61275..61469 | TCONS_00014125-exon-sc0000181-1491911889:61275..61469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:61275..66211 - |
Blast
The following BLAST results are available for this feature:
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