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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014061 ID=TCONS_00014061|Name=TCONS_00014061|organism=Clytia hemisphaerica|type=transcript|length=1331bp
AAGAACTTAAACTTCTATAGCTTGAATGTCTCCATAACTCGGACAAGTAT
TCGGGTTCCTTCAGGTAACCGACCCTTATAACCATGTCTCTCAAActcaa
attatttcataaatcgaacaaaattcagGTTCCCCATGGTGCGAGCTCGA
GTTTTGGagagaacatttcaaattcaagtTATTCTTACGTTTCACATGAG
CAATGAATGAATttacttcttcttcttcttctctacAGCATTCTCTTCCA
TGGTGACGTATATTGAATTTTTCGCAGCATGGACCAACTATTTCTACGGC
AAATGCAACCACGACCAAtggttctgtaaaatacacacaaaTCATTTGGT
TAATCAACATCGAAATAGGTATGAAGTGGTCGAGGAGAGTGAGTATGTGC
ATGAAAAACCAGGACCACTTTCCACATTCAAGATGAAGAGTTTTGATGAT
ATGAATATCACATCACCAGTAGCTATTGGTGATGATGGAGTATTTACTGt
AACTGGTGCTTCAATCTACAAGAGTGGTGATcgcattttaaatttcaatg
gTAACTTATGAGCAAGAACCCCCGCACATATTCATTTAACCAATGGTTGA
TGATGGACGAGATTGATATCGTCATATTTCACCAATGGtgttagacgttt
ttcattggCAGCGCTTTATCCATTCAAGTTCATTTAGGAAGAAACGGCGC
CTTACAACTTTGCGAACAAACATTCGACTATTGCTATGTCGCTGACTGGG
TCTTCATGCCGCTTCGGCTTCTTGTTTTATATTAGACGATTATACCGTTC
AGTATGAATGGAAAATATGCTCTTACTTGGATTCCCTGTTCGAGTCAACT
GACAAAGAAAACCTACttggaaaacaaaattgaaaatttgccGTAGGGTG
TTAACAGTGTTAATGAGCATTTTTAAGTTAATGTCTTTACTGTGACTTGA
ATGAATTTTATCTTTAACGTGGGACTAAAGGAAAACGATTTTGTGCACGA
AGAACTGCGCCAAGCAAAAGAAGGGGTCttgcaaaacaaaagaaaatgat
cTTCTTGGATCGTGCTATGATCAGCATTAGAAAAGAAGTTGGTCTTAACA
TTCAAAGTATAGTATGatggacggtgaaaaagaatgtggctattatattt
tgatttttcccgacatgtttcggactcggtccgttctcaagggaatgata
tttctatagaaaaaagagtgtttttatacaaaattatttgaatCAAATTG
AACAAATACGTCATTTTTGGCGATTTCGGCTTGAAAATGGGTTGGTGTAA
ATTCAAAGTATAGTATAAGCAAGTGaaagag Run BLAST on NCBI transcript from alignment at sc0000180:272401..276207- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014061 ID=TCONS_00014061|Name=TCONS_00014061|organism=Clytia hemisphaerica|type=transcript|length=3807bp|location=Sequence derived from alignment at sc0000180:272401..276207- (Clytia hemisphaerica)
AAGAACTTAAACTTCTATAGCTTGAATGTCTCCATAACTCGGACAAGTAT
TCGGGTTCCTTCAGGTAACCGACCCTTATAACCATGTCTCTCAAACTCAA
ATTATTTCATAAATCGAACAAAATTCAGGTTCCCCATGGTGCGAGCTCGA
GTTTTGGAGAGAACATTTCAAATTCAAGTTATTCTTACGTTTCACATGAG
CAATGAATGAATTTACTTCTTCTTCTTCTTCTCTACAGCATTCTCTTCCA
TGGTGACGTATATTGAATTTTTCGCAGCATGGACCAACTATTTCTACGGC
AAATGCAACCACGACCAATGGTTCTGTAAAATACACACAAATCATTTGGT
TAATCAACATCGAAATAGGTATTTTAGGCGTAGACTGTCCGCGAAACTTT
TGCGGATCATTTACTTTTTGGCGAAAGTTAAATTTTTGAAGATTCTTAAC
AAGCCAATTTCCAAAGGTTTCTTTGAATATTTTGATAAACCTTAATCCAC
AACTAGAAATTTGTGTTCCTAGTGCGTTTTCGAGTTATGGAGACTTCGCC
ATTTATTGTGTTATTCTGTTTTAGGTATGAAGTGGTCGAGGAGAGTGAGT
ATGTGCATGAAAAACCAGGACCACTTTCCACATTCAAGATGAAGAGTTTT
GATGATATGAATATCACATCACCAGTAGCTATTGGTGATGATGGAGTATT
TACTGGTAAGTTTTTTGAACAAGTTCACGTACGTACTTTGGGATTTTTTT
GGGTAGATTTTCAGAAAAACGTAATATTCTCATCTAATAGAATAGCATAA
GAATTTTAGCATTCCATCGTGGATTTTAGTGGATTTCGTAAATAAACCCA
AACGTTACATCGAATATTTCATTATGAATCAAATCACTATCAAAATTTTA
CGGGACAAATTTTTTGAGGTATTTTTATCTCTGTAAAAACCTGAGGTGAT
AATTTCAGAAAAATCATTCGGTGCAAACCAATCATGCACGAGCGCAGAAA
ACTAAACGAGATCTTTCCTGGTGATCAAATTCTTTTTGATAAAGTCATTT
TAAATCAAATTTATAGACTATTTAGATTTCAGTGACCGCGTAGTAATCAT
CCAGGCTTCAGTGCTAATTCAAATCATGATACCTTAACCCAGCTGGCACA
CAACGTTGTTTCAACGTTCATCTAACGTTATATGGACGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAACTCTCGGACGGGAATTTTATACACGATACGCGTCCCCT
ATATCAAAACACATCAGAGGGGATGCGTGCCGCCTACCCTACAATTAACT
AATAATTCATCATAACCGGTCCATAGAACCAGGATAAGTCCAGTGAAAAA
AAGAAAACTCGCATGGAGTTCCAAATTTAGAAAAAAATTGAAACAAAATA
TTAATTAACACAGAAGAACTTAAACTTCTATAGCTTGAATGTCTCCATAA
CTCGGACAAGTATTCGGGTTCCTTCAGGTAACCGACCCTTATAACCATGT
CTCTCAAACTCAAATTATTTCATAAATCGAACAAAATTCAGGTTCCCCAT
GGTGCGAGCTCGAGTTTTGGAGAGAACATTTCAAATTCAAGTTATTCTTA
CGTTTCACATGAGCAATGAATGAATTTACTTCTTCTTCTTCTTCTCTACA
GCATTCTCTTCCATGGTGACGTATATTGAATTTTTCGCAGCATGGACCAA
CTATTTCTACGGCAAATGCAACCACGACCAATGGTTCTGTAAAATACACA
CAAATCATTTGGTTAATCAACATCGAAATAGGTATTTTAGGCGTAGACTG
TCCGCGAAACTTTTGCGGATCATTTACTTTTTGGCGAAAGTTAAATTTTT
GAAGATTCTTAACAAGCCAATTTCCAAAGGTTTCTTTGAATATTTTGATA
AACCTTAATCCACAACTAGAAATTTGTGTTCCTAGTGCGTTTTCGAGTTA
TGGAGACTTCGCCATTTATTGTGTTATTCTGTTTTAGGTATGAAGTGGTC
GAGGAGAGTGAGTATGTGCATGAAAAACCAGGACCACTTTCCACATTCAA
GATGAAGAGTTTTGATGATATGAATATCACATCACCAGTAGCTATTGGTG
ATGATGGAGTATTTACTGGTAAGTTTTTTGAACAAGTTCACGTACGTACT
TTGGGATTTTTTTGGGTAGATTTTCAGAAAAACGTAATATTCTCATCTAA
TAGAATAGCATAAGAATTTTAGCATTCCATCGTGGATTTTAGTGGATTTC
GTAAATAAACCCAAACGTTACATCGAATATTTCATTATGAATCAAATCAC
TATCAAAATTTTACGGGACAAATTTTTTGAGGTATTTTTATCTCTGTAAA
AACCTGAGGTGATAATTTCAGAAAAATCATTCGGTGCAAACCAATCATGC
ACGAGCGCAGAAAACTAAACGAGATCTTTCCTGGTGATCAAATTCTTTTT
GATAAAGTCATTTTAAATCAAATTTATAGACTATTTAGATTTCAGTGACC
GCGTAGTAATCATCCAGGCTTCAGTGCTAATTCAAATCATGATACCTTAA
CCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGTTATATGGAC
GTTGTGAACGTTAAATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGAA
CTTTGGGCAATAATTGATTGAAAAAAAAATCCATCCATCCATCTTCCGAT
TGTCTCTTCATTTTATTTTTTCCAGTAACTGGTGCTTCAATCTACAAGAG
TGGTGATCGCATTTTAAATTTCAATGGTAACTTATGAGCAAGAACCCCCG
CACATATTCATTTAACCAATGGTTGATGATGGACGAGATTGATATCGTCA
TATTTCACCAATGGTGTTAGACGTTTTTCATTGGCAGCGCTTTATCCATT
CAAGTTCATTTAGGAAGAAACGGCGCCTTACAACTTTGCGAACAAACATT
CGACTATTGCTATGTCGCTGACTGGGTCTTCATGCCGCTTCGGCTTCTTG
TTTTATATTAGACGATTATACCGTTCAGTATGAATGGAAAATATGCTCTT
ACTTGGATTCCCTGTTCGAGTCAACTGACAAAGAAAACCTACTTGGAAAA
CAAAATTGAAAATTTGCCGTAGGGTGTTAACAGTGTTAATGAGCATTTTT
AAGTTAATGTCTTTACTGTGACTTGAATGAATTTTATCTTTAACGTGGGA
CTAAAGGAAAACGATTTTGTGCACGAAGAACTGCGCCAAGCAAAAGAAGG
GGTCTTGCAAAACAAAAGAAAATGATCTTCTTGGATCGTGCTATGATCAG
CATTAGAAAAGAAGTTGGTCTTAACATTCAAAGTATAGTATGATGGACGG
TGAAAAAGAATGTGGCTATTATATTTTGATTTTTCCCGACATGTTTCGGA
CTCGGTCCGTTCTCAAGGGAATGATATTTCTATAGAAAAAAGAGTGTTTT
TATACAAAATTATTTGAATCAAATTGAACAAATACGTCATTTTTGGCGAT
TTCGGCTTGAAAATGGGTTGGTGTAAATTCAAAGTATAGTATAAGCAAGT
GAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014061-exon-sc0000180-1575043694:275840..276207 | TCONS_00014061-exon-sc0000180-1575043694:275840..276207 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1575043694:273840..273970 | TCONS_00014061-exon-sc0000180-1575043694:273840..273970 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1575043694:272401..273232 | TCONS_00014061-exon-sc0000180-1575043694:272401..273232 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1510915933:275840..276207 | TCONS_00014061-exon-sc0000180-1510915933:275840..276207 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1510915933:273840..273970 | TCONS_00014061-exon-sc0000180-1510915933:273840..273970 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1510915933:272401..273232 | TCONS_00014061-exon-sc0000180-1510915933:272401..273232 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1491911889:275840..276207 | TCONS_00014061-exon-sc0000180-1491911889:275840..276207 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1491911889:273840..273970 | TCONS_00014061-exon-sc0000180-1491911889:273840..273970 | Clytia hemisphaerica | exon |
| TCONS_00014061-exon-sc0000180-1491911889:272401..273232 | TCONS_00014061-exon-sc0000180-1491911889:272401..273232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:272401..276207 - |
Blast
The following BLAST results are available for this feature:
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