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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014053 ID=TCONS_00014053|Name=TCONS_00014053|organism=Clytia hemisphaerica|type=transcript|length=918bp
CTTTTGTAGTTGGTTTTCCACCCTATATAAACAGACTGTCAATTCTAGAC
TTAATAAATAAAGAGCAAGTCACCTTGAGTCAATACAGCCAGCAAAAGAA
TAAACCCATTCGCAATTGAGTATTTTTTTATCAGGCATTTTATAGGATAA
ACTTTACACGTACATAATGGAACACATTTTGAATTGGTTGTTTTTCGTTG
TTTTCGGACAAATTATTATTGCAGCGTCATCATTGAAGAACATTGGTCCT
ATTGGTGATTTCCAAGTCTATGAATATGATGCTAATGTGAAAAGCCTTCC
AGACAATATCAATGGAGCACCCGTCCGAAAGATAACACACTTCCACGCAA
GCATTACAAAATTACAAGAGCCTAGCGTGGGTGAATGTATAATGTTGGAC
TGTAAATACTGTCTTGGAAGAAAACGATTAAGAAAACCAGATAGTCGTTG
CTCATGTGGATGTATGAGTATGGTTGAATGTAATTTTGCAAACCAAACCC
AAAATACAGTTTACTTATTGTTTAACCATGCGCAGAAATGCAAGACCACT
GAAGTTTTTGCTAAAGGACATTCGAAGGTGACTAGTAATGCAGCTAAGAA
TGCATTGTTAGGGACTGATGATCAGAAAAAATCAGTAATATCTATTCACG
GATCTGTTTTAATGAACGCTGTTTGTGGGATGGTACTATTGTTGATGGTT
GTGGGTATCATGTACATGATCAAGCGCCGCTGTCGACCTACCCTGAGACA
AACTAAAATGAGGATAGAACAAGGCAACGCGTGAAAAATGAACGCTTTTG
CGAACACAATCATCTTTGAAATCACCTTTCCGTATATAAAGCGTGCTTAA
AATTGTTTACTGAGATCTTGATTTGATTCGAAATTCATTATTACAACAAG
ATACCTGTCTCATTTTGC Run BLAST on NCBI protein sequence of TCONS_00014053-protein >TCONS_00014053-protein ID=TCONS_00014053-protein|Name=TCONS_00014053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MEHILNWLFFVVFGQIIIAASSLKNIGPIGDFQVYEYDANVKSLPDNING
APVRKITHFHASITKLQEPSVGECIMLDCKYCLGRKRLRKPDSRCSCGCM
SMVECNFANQTQNTVYLLFNHAQKCKTTEVFAKGHSKVTSNAAKNALLGT
DDQKKSVISIHGSVLMNAVCGMVLLLMVVGIMYMIKRRCRPTLRQTKMRI
EQGNA Run BLAST on NCBI transcript from alignment at sc0000180:15494..18718- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014053 ID=TCONS_00014053|Name=TCONS_00014053|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at sc0000180:15494..18718- (Clytia hemisphaerica)
CTTTTGTAGTTGGTTTTCCACCCTATATAAACAGACTGTCAATTCTAGAC
TTAATAAATAAAGAGCAAGTCACCTTGAGTCAATACAGCCAGCAAAAGAA
TAAACCCATTCGCAATTGAGTATTTTTTTATCAGGCATTTTATAGGATAA
ACTTTACACGTACATAATGGAACACATTTTGAATTGGTTGTTTTTCGTTG
TTTTCGGACAAATTATTATTGCAGCGTCATCATTGAAGAACATTGGTCCT
ATTGGTGATTTCCAAGTCTATGAATATGATGCTAATGGTATGTTACTTTC
ACTCTTTATCGATCATTTACACGTGCCTCATTGGGCACAGACTCAGCCTC
GTGTATCCCAGGCTTTATTTATGTTACTGATAGACGCCAGAATCTATTAT
CTGGCGCATTCAGTAACCATCAATAAGCTGATAATACGAGGCTTTTGACA
TAGAACATTCGTATACCCTTGATGTCACAAAACTGACGTGGATACCTGTC
CGTGCTACTGCTAGTATATGTTTGATATTTGGAATGATAAAGAATGTTCC
AACCTCCTCAGCTATTAGCAAGGTTAAGCAAGTGCCTATTTAGACCGTTC
AATGTACAGGCCTACGGTATCGCACTTTACGGTCAAAATAAACCCGTGCT
TAACCTTGCTATTAGGTAAATCAGGTTTTTGCAAAATGTCAATTTCAAAA
CAAAAGTGATAAGTGGTATGAAAATTCTTGAAAATTGGGCTTTTCCAGAA
AAAAACGTATACCCCCTGTTGAGGAGGTCCATCCCTCTGTGGCTGGAAAT
GCTGTAACCCCCTGGAATTCCAGGCAATTTCAGGTTTAAACCCCTCTGGA
ATTCCGAATTTTAGTAGGATTAAAAAAGCTACCCCCATGGAATTTCCTTC
CTTTTTGTATCTCCCTATGGAATTCCGCCACATATCAAGCCTTACCCCCT
TGGAACGGAAATGGACCTCCTCAACAGGGGGTATACGGTTTTTTTCTGGA
AAAGCCCTTCAATCTCTCTCCGTGGGGCTACTTGCTTTCCACCGGGTTAC
AAACTTTTGGGAAAATTTTTTTAACAACCTTCTCACCGGGGACTAAATTT
TTACCGGGTACTGTGATAGGACAGTCGATGGCTTAATTCACCAAGTTTCA
AAGGAGAGTCATTATACGATAAATATACACTTGGAAATGTTGCTGTCATG
ACCCCAATTCGAAACGTGATGCATGCATGTCCAACTTTTAAAATCCGATC
CTTACTCAAGAGCGTCTTCCTTGCCTCAGTCATTGTATTGTTTTAAAGTC
GTGACAAAATCTGTAAGAGTGCTTTTAAATGGTGATAGATATTTTTTATT
CTGCTGGAATCATTTGGTTGCCAAAACATGTGCAAGACAATCAGAGATGG
CTAGGAAAATCGGTTTTGTAAAAATTCACCCCAGATCAATAGTCTCTCCA
GCTAGTGTCGAAAATCCTTGGGGAGAGAATTACCAAGGCAAATGGAGAGT
GCAGGTACATATGCCGGCTAACTTTTAGTCTGAATCGCATACCTCTACAA
AACCCTAGGTAGTATAGGGAGCTTCTATAAGGAGCACGAATCCGTTAGTG
GATGCCAGCAGCCTAGCTAACTTTCAGATTTCCAAAATTTTGATAGCACA
TATGCTTCATTAGCAAACCCGGCCTCCTGAAAGATAATAAGGGTCGCTCT
ATCACATGTTATATTAATGATTTGTTTACAAGAAGTTTAAAGTAAATTTA
AAGTGGGGTGTAACTCTCATGTTTAGTCTCCTTGAATTTAGAAATCATGT
GAATTTAATCCGATTATACAAGTCTACTGATGTCAGAACCCAAGGAGCTC
TCAAAACACTTGAATAGTAAAATATGGATTAGCAAATGCGTACTTTATGA
ACTGCAGATTAAGTCTGCTGGAGTACCAATTAGGGAGAAAAAAATTCGAA
TCTATTTTGATAAAAAGCTAGATACATACTTAAATCCCCGCGACACTAAA
GTAGTGTCACGCTATAATTTTTAGTTTAATGAATTCCCCTTCGAAGGCAT
TTCTACCTCGCTCCTAAAGGATCTAATAAGGTTGCTTAGAAAAAAGTTGT
TATGTTATAAGATCCAAAGAAATTGCCCAAAGCGTTTTCGTCATGTCATG
ATAATAATAATGACGTCATTATTACGCCTCAAAAGATTCAATTAGAATAG
GCAGGGCGAAAAATGGGCTGTCTAAACTAGAGCTTACTTGCATTCAGGCG
TTTTATCCAATAGTGTGGTCGTGATGCGGATATCATTAGAATTGTTAGGG
AATTCTGAACAAGAAAATATGTGTCTCTTGGTCTGAGTGAGGTGTTCTTT
AAAATATAAGCCTCTAAAGTTTACGCATAAATAGACAAGATAATTTCGTC
ACATCACACTAATTAAGCAGATTTTTCTGATCAACAACAAAATAAATCCA
CTATCCGAAACAAACTCCAGGGCAAAGGACCTGATACATGACGAGCCGTA
CTTCCATTGCTTTCAAAAAGCTGTTTCTCCATTTTTTACACTTCTCTACG
TAAATGGGATGTCTAAATTTCATTATACCTATTTCTCTTTCTAGTGAAAA
GCCTTCCAGACAATATCAATGGAGCACCCGTCCGAAAGATAACACACTTC
CACGCAAGCATTACAAAATTACAAGAGCCTAGCGTGGGTGAATGTATAAT
GTTGGACTGTAAATACTGTCTTGGAAGAAAACGATTAAGAAAACCAGATA
GTCGTTGCTCATGTGGATGTATGAGTATGGTTGAATGTAATTTTGCAAAC
CAAACCCAAAATACAGTTTACTTATTGTTTAACCATGCGCAGAAATGCAA
GACCACTGAAGTTTTTGCTAAAGGACATTCGAAGGTGACTAGTAATGCAG
CTAAGAATGCATTGTTAGGGACTGATGATCAGAAAAAATCAGTAATATCT
ATTCACGGATCTGTTTTAATGAACGCTGTTTGTGGGATGGTACTATTGTT
GATGGTTGTGGGTATCATGTACATGATCAAGCGCCGCTGTCGACCTACCC
TGAGACAAACTAAAATGAGGATAGAACAAGGCAACGCGTGAAAAATGAAC
GCTTTTGCGAACACAATCATCTTTGAAATCACCTTTCCGTATATAAAGCG
TGCTTAAAATTGTTTACTGAGATCTTGATTTGATTCGAAATTCATTATTA
CAACAAGATACCTGTCTCATTTTGC Coding sequence (CDS) from alignment at sc0000180:15494..18718- >TCONS_00014053 ID=TCONS_00014053|Name=TCONS_00014053|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000180:15494..18718- (Clytia hemisphaerica)
TGAAAAGCCTTCCAGACAATATCAATGGAGCACCCGTCCGAAAGATAACA
CACTTCCACGCAAGCATTACAAAATTACAAGAGCCTAGCGTGGGTGAATG
TATAATGTTGGACTGTAAATACTGTCTTGGAAGAAAACGATTAAGAAAAC
CAGATAGTCGTTGCTCATGTGGATGTATGAGTATGGTTGAATGTAATTTT
GCAAACCAAACCCAAAATACAGTTTACTTATTGTTTAACCATGCGCAGAA
ATGCAAGACCACTGAAGTTTTTGCTAAAGGACATTCGAAGGTGACTAGTA
ATGCAGCTAAGAATGCATTGTTAGGGACTGATGATCAGAAAAAATCAGTA
ATATCTATTCACGGATCTGTTTTAATGAACGCTGTTTGTGGGATGGTACT
ATTGTTGATGGTTGTGGGTATCATGTACATGATCAAGCGCCGCTGTCGAC
CTACCCTGAGACAAACTAAAATGAGGATAGAACAAGGCAACGCGTGAATG
GAACACATTTTGAATTGGTTGTTTTTCGTTGTTTTCGGACAAATTATTAT
TGCAGCGTCATCATTGAAGAACATTGGTCCTATTGGTGATTTCCAAGTCT
ATGAATATGATGCTAATGTGAAAAGCCTTCCAGACAATATCAATGGAGCA
CCCGTCCGAAAGATAACACACTTCCACGCAAGCATTACAAAATTACAAGA
GCCTAGCGTGGGTGAATGTATAATGTTGGACTGTAAATACTGTCTTGGAA
GAAAACGATTAAGAAAACCAGATAGTCGTTGCTCATGTGGATGTATGAGT
ATGGTTGAATGTAATTTTGCAAACCAAACCCAAAATACAGTTTACTTATT
GTTTAACCATGCGCAGAAATGCAAGACCACTGAAGTTTTTGCTAAAGGAC
ATTCGAAGGTGACTAGTAATGCAGCTAAGAATGCATTGTTAGGGACTGAT
GATCAGAAAAAATCAGTAATATCTATTCACGGATCTGTTTTAATGAACGC
TGTTTGTGGGATGGTACTATTGTTGATGGTTGTGGGTATCATGTACATGA
TCAAGCGCCGCTGTCGACCTACCCTGAGACAAACTAAAATGAGGATAGAA
CAAGGCAACGCGTGAATGGAACACATTTTGAATTGGTTGTTTTTCGTTGT
TTTCGGACAAATTATTATTGCAGCGTCATCATTGAAGAACATTGGTCCTA
TTGGTGATTTCCAAGTCTATGAATATGATGCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014053-exon-sc0000180-1575043694:18432..18718 | TCONS_00014053-exon-sc0000180-1575043694:18432..18718 | Clytia hemisphaerica | exon |
| TCONS_00014053-exon-sc0000180-1575043694:15494..16124 | TCONS_00014053-exon-sc0000180-1575043694:15494..16124 | Clytia hemisphaerica | exon |
| TCONS_00014053-exon-sc0000180-1510915933:18432..18718 | TCONS_00014053-exon-sc0000180-1510915933:18432..18718 | Clytia hemisphaerica | exon |
| TCONS_00014053-exon-sc0000180-1510915933:15494..16124 | TCONS_00014053-exon-sc0000180-1510915933:15494..16124 | Clytia hemisphaerica | exon |
| TCONS_00014053-exon-sc0000180-1491911889:18432..18718 | TCONS_00014053-exon-sc0000180-1491911889:18432..18718 | Clytia hemisphaerica | exon |
| TCONS_00014053-exon-sc0000180-1491911889:15494..16124 | TCONS_00014053-exon-sc0000180-1491911889:15494..16124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:15494..18718 - |
Blast
The following BLAST results are available for this feature:
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