|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014043 ID=TCONS_00014043|Name=TCONS_00014043|organism=Clytia hemisphaerica|type=transcript|length=3134bpRun BLAST on NCBI protein sequence of TCONS_00014043-protein >TCONS_00014043-protein ID=TCONS_00014043-protein|Name=TCONS_00014043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp MAEQSQEISQQPQQQNPLTRKLKKILNTRLDNDKELVDALKALSSFFGENRun BLAST on NCBI transcript from alignment at sc0000180:227962..263098+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014043 ID=TCONS_00014043|Name=TCONS_00014043|organism=Clytia hemisphaerica|type=transcript|length=35137bp|location=Sequence derived from alignment at sc0000180:227962..263098+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000180:227962..263098+ >TCONS_00014043 ID=TCONS_00014043|Name=TCONS_00014043|organism=Clytia hemisphaerica|type=CDS|length=35853bp|location=Sequence derived from alignment at sc0000180:227962..263098+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014043 vs. Swiss-Prot (Human)
Match: COG6 (Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=1 SV=2) HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0 Identity = 323/625 (51.68%), Postives = 460/625 (73.60%), Query Frame = 1
Query: 112 NPLTRKLKKILNTRLDNDKELVDALKALSSFFGENTLRARRNLRGDVEKRSLEISEQFESQFKEVKTKLDEISTDIMSMNKCCVEMMDRLKNSKESTADLISKTTHLQNERKELELKGTIADAFLDRFQLTQNEIKALRASKENVVSEEYFNALARCKQIHQDCRLLLRSKQQTAGLEIMESMALYQETAYEKLYRWAQEECRSMTNDMPDISGALCKSIEALQDRQVLLRYTLDELGAARRTAVVRCFIDALTRGGAGGTPRPIELYSHDPVRYVGDILAWLHQAVAGEKELLQSLLRRTNIKEHKPMILEVLNHIMEGICQPFKVRVEQVITSDPGASILFKLGNLMKFYGETLANLFENETSTIVTCIEEMHHLSQQMFFNNLSFHGSKLVEKMDLPPPDLSPSQVVNETLSLLKEVLSSHDTAVSSVSEQQSAYEKIMNCLLDPLLQCCMVAANRMNSADSATYMINCLHNVETCLGVFEFTDVKLDVLSTQIAIHVETLAKEQVEFILERSTLA----TLCEATKNLGE-----TIDQQTVKSTMGMFDQFLANPDSLNLPQLELLRATRLRESIRSKGLRSIEETYGELYQSLTTTFN---IPTNLITRTPEHIKQLLS 1950
NPL+RKL KIL TRLDNDKE+++ALKALS+FF EN+LR RRNLRGD+E++SL I+E+F S FKEVK +L+ IS D+ +M+ CC +M RL+ +KE T DLI KTT LQ+E ++LE++ +ADAFL +FQLT +E+ LR ++E ++E++F AL R KQIH D ++LLR+ QQTAGLEIME MAL QETAYE+LYRWAQ ECR++T + D+S L +++EALQDR VL +YTLDE G ARR+ VVR FIDALTRGG GGTPRPIE++SHDP+RYVGD+LAWLHQA A EKE L++LL+ + + I EV+ HI EG+C+P KVR+EQVI ++PGA +L+K+ NL+KFY T++ + N + ++T IEEMH LS+++FFN+LS H SKL++K++LPPPDL PS +N+TL LL+EVL+SHD++V + +Q+ + ++++C+LDPLLQ C V+A+ + +AD AT+M+N L+ ++T L +FEFTD +L++L QI H++TL EQ ++L R L+ T+ + G +D T+K+ M FD++L+ PD+L +PQL L + ++E I + + YGE+Y ++ N P N++ R+P+ ++ LLS
Sbjct: 33 NPLSRKLHKILETRLDNDKEMLEALKALSTFFVENSLRTRRNLRGDIERKSLAINEEFVSIFKEVKEELESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLEIRAQVADAFLSKFQLTSDEMSLLRGTREGPITEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALLQETAYERLYRWAQSECRTLTQESCDVSPVLTQAMEALQDRPVLYKYTLDEFGTARRSTVVRGFIDALTRGGPGGTPRPIEMHSHDPLRYVGDMLAWLHQATASEKEHLEALLKHVTTQGVEENIQEVVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGNSATALLTTIEEMHLLSKKIFFNSLSLHASKLMDKVELPPPDLGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSASNLGTADMATFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRVGLSYIYNTVQQHKPEQGSLANMPNLDSVTLKAAMVQFDRYLSAPDNLLIPQLNFLLSATVKEQIVKQSTELVCRAYGEVYAAVMNPINEYKDPENILHRSPQQVQTLLS 657 The following BLAST results are available for this feature:
BLAST of TCONS_00014043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.