|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014039 ID=TCONS_00014039|Name=TCONS_00014039|organism=Clytia hemisphaerica|type=transcript|length=2557bp
TGATGAGTGAACGAATCTcgtgaatattttttgagcacGTCTGAGTAtga
attgatattttttgcGAAAAAACACGTACGTATACATACTAGCGAATTTG
GTTGCTTTTCGTCAGGACATTTTCCGAATTGTTACGGCTTTTGACCTGAC
ATATTTAAGCTGAATCAGTTATTGTTTGAAGGGAAAATCGTGATCGACGC
AAATTATATCACTAACTGTTTTTTGATTGCTAAATACAAGGAAAACAGGT
CCAATAtgtattttagaaaaatcatcaaaaattgcattttttgctTGTAA
GTGCTATATTgtcgttttttttaattgcGTCATTTTCAATAAGTCAaacg
tcattaattttttttattatgatgACACGTTATTACTATCCTACACTCTA
CAATAAAAACATAGAGGGATGACATTTCTCACTTCACAACAGTTGGTGTC
GGTCAGCGATTGCGCTTTGACCTGTTTTAGCGTAGGTTTTTTGTTATTTA
ATGTTTCCTTTAACACTTTCCTTGTCTACATTTTTGCACGATGTAAGAAA
CTATGCTTTCTCTCTCGGTTATTATACTGTGTTGATATCTGATCTGTGAG
GCTATGAGATGAGATTTTCTGTCAACCCAACTAGATATATTGGATTCGAT
GTTgataataacattttttggaattgtaTCCttagaatacacgttttttt
ttataagaacgtcaaaaaatttcgaagccttcggatgttcttagtttttt
ggatttgaagcctaaaaagttcttaaaatgttcttattttcagcattttt
tgagcattttgatgtaatttcttaaaaaaaatgcatgtttttcagaatgt
tcttaaatttttgggcctcgaagccttatgttcttatataaaaaaaacgt
gtagctaaAGACCGAAGAACTACATCCAAATTTACTCCCGAATTTCTTGA
AGCGTTATTGTTCTTAAATGCTcttatttttcaccatttttgtgAGTTTT
GACTCGCTGTAGAGGCGTAGAAGGGAAAGGGAACAGGAAGAGAAAATTAA
CATACAGTACTATAGCCTATCAGTCATACAGTTTTAATATATGAATGCGG
TATACAACATACTGCAAGCTATAAACGTCTCTCTGAGTAATAGACTAGTC
ACGTATTGTTTTCTTGACATGCGCAGATTGAGTCGTgatcaaaatgacgt
catcttttctattttttgttttgttttattattcaTGTCTTTCTATTTTA
TATATCAATCAATTCTATTTCACGGTTGTTTtcttattatatattttgtc
ctctttatttttagaaaagattaaaagaggaaagataaataaaaaaagaa
catcGCCACCTTTTAACTAATACACTCTTACTCGCACTCgagaaagaatt
ttgaaaaagacaTCACTTAGTACCGTCGACCACAAGAGGCTGCACATACA
CCTTACACATTGGGTTACATCGTACTCACTTGTGTTCCTTTAGTATTATT
ATGTCCATCATGATCGAACCGATGCACCCGAAATTACCTGCATACGAATT
AGACTCTGTTGCAGATGATAAACTTGAAGCACTGATCATGACATTGGGAT
TGAAGGCTCACGTACAGAATTCTTATGATCCTTGCTGTGTTATCTGTCGC
CAAAACATGATGCTCAAGAATCACCACCCAAACCACCCTAACCATCCTCA
AGCTTTACGCCATCAATTCACACCCGCCCAACAACAAATGGGCGGTAATT
TTCATCAGAATCGTTTCTATCATCATCAACAAAACAGATAAGATGGGGGG
TGgaatttgaattgaaaatgGAATTTATTTGAATGCGGGTGAACGATTTT
AAAAGTGGAATTTTTCACGAATGAATGAGATTTTGGTGTTTCTTGATTTC
CCGTTGAGTCAgttttggattgaatttagAATCCATTTTATCgtgttttt
taaacttggaGAAAAAGTAGGGCCAAGATGCTGgcgtttttaaacttttt
ttacaataaCAATGAGTTCATAAAGAAGAACGACAAGAACATACATTGCC
ATGTCTTAGCCAAAAAAAAACTGCCGACTAATACCGTGACTTATTGTTAT
CCAAATGAACTGATGCTTTGTCAATATATTGCATCGTGTTGTGTTACATA
TACATATTATAGCTTCCAtggaaatttttggaaagataATATTTAGATGA
TGATATCGGAAAgatgaacatttttttataaattattttctttttttgaa
ataagaatttactattttgatttttagtgacaaaaatcgttttcaaattt
aaaccATGACTTGAAATGGTCTTGATCCCTTTTAATATTGATTGTGTGTA
CTGCTGGACGAAATATACAGTTTCTTAAAATAAGGTTGATAAGAATTTTT
ATCGTTTATAGTGTTGTGAACAAATAAGTTTATTTATTTGccattatttg
aaaacaaaaatttataattatgtAGAAATATtgttaataaaagaaaaatt
ttaatgctTATatgttttttgtgaaaaaaatattgttggaAATAATTTGA
TCTTAAG Run BLAST on NCBI transcript from alignment at sc0000180:125189..127745+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014039 ID=TCONS_00014039|Name=TCONS_00014039|organism=Clytia hemisphaerica|type=transcript|length=2557bp|location=Sequence derived from alignment at sc0000180:125189..127745+ (Clytia hemisphaerica)
TGATGAGTGAACGAATCTcgtgaatattttttgagcacGTCTGAGTAtga
attgatattttttgcGAAAAAACACGTACGTATACATACTAGCGAATTTG
GTTGCTTTTCGTCAGGACATTTTCCGAATTGTTACGGCTTTTGACCTGAC
ATATTTAAGCTGAATCAGTTATTGTTTGAAGGGAAAATCGTGATCGACGC
AAATTATATCACTAACTGTTTTTTGATTGCTAAATACAAGGAAAACAGGT
CCAATAtgtattttagaaaaatcatcaaaaattgcattttttgctTGTAA
GTGCTATATTgtcgttttttttaattgcGTCATTTTCAATAAGTCAaacg
tcattaattttttttattatgatgACACGTTATTACTATCCTACACTCTA
CAATAAAAACATAGAGGGATGACATTTCTCACTTCACAACAGTTGGTGTC
GGTCAGCGATTGCGCTTTGACCTGTTTTAGCGTAGGTTTTTTGTTATTTA
ATGTTTCCTTTAACACTTTCCTTGTCTACATTTTTGCACGATGTAAGAAA
CTATGCTTTCTCTCTCGGTTATTATACTGTGTTGATATCTGATCTGTGAG
GCTATGAGATGAGATTTTCTGTCAACCCAACTAGATATATTGGATTCGAT
GTTgataataacattttttggaattgtaTCCttagaatacacgttttttt
ttataagaacgtcaaaaaatttcgaagccttcggatgttcttagtttttt
ggatttgaagcctaaaaagttcttaaaatgttcttattttcagcattttt
tgagcattttgatgtaatttcttaaaaaaaatgcatgtttttcagaatgt
tcttaaatttttgggcctcgaagccttatgttcttatataaaaaaaacgt
gtagctaaAGACCGAAGAACTACATCCAAATTTACTCCCGAATTTCTTGA
AGCGTTATTGTTCTTAAATGCTcttatttttcaccatttttgtgAGTTTT
GACTCGCTGTAGAGGCGTAGAAGGGAAAGGGAACAGGAAGAGAAAATTAA
CATACAGTACTATAGCCTATCAGTCATACAGTTTTAATATATGAATGCGG
TATACAACATACTGCAAGCTATAAACGTCTCTCTGAGTAATAGACTAGTC
ACGTATTGTTTTCTTGACATGCGCAGATTGAGTCGTgatcaaaatgacgt
catcttttctattttttgttttgttttattattcaTGTCTTTCTATTTTA
TATATCAATCAATTCTATTTCACGGTTGTTTtcttattatatattttgtc
ctctttatttttagaaaagattaaaagaggaaagataaataaaaaaagaa
catcGCCACCTTTTAACTAATACACTCTTACTCGCACTCgagaaagaatt
ttgaaaaagacaTCACTTAGTACCGTCGACCACAAGAGGCTGCACATACA
CCTTACACATTGGGTTACATCGTACTCACTTGTGTTCCTTTAGTATTATT
ATGTCCATCATGATCGAACCGATGCACCCGAAATTACCTGCATACGAATT
AGACTCTGTTGCAGATGATAAACTTGAAGCACTGATCATGACATTGGGAT
TGAAGGCTCACGTACAGAATTCTTATGATCCTTGCTGTGTTATCTGTCGC
CAAAACATGATGCTCAAGAATCACCACCCAAACCACCCTAACCATCCTCA
AGCTTTACGCCATCAATTCACACCCGCCCAACAACAAATGGGCGGTAATT
TTCATCAGAATCGTTTCTATCATCATCAACAAAACAGATAAGATGGGGGG
TGgaatttgaattgaaaatgGAATTTATTTGAATGCGGGTGAACGATTTT
AAAAGTGGAATTTTTCACGAATGAATGAGATTTTGGTGTTTCTTGATTTC
CCGTTGAGTCAgttttggattgaatttagAATCCATTTTATCgtgttttt
taaacttggaGAAAAAGTAGGGCCAAGATGCTGgcgtttttaaacttttt
ttacaataaCAATGAGTTCATAAAGAAGAACGACAAGAACATACATTGCC
ATGTCTTAGCCAAAAAAAAACTGCCGACTAATACCGTGACTTATTGTTAT
CCAAATGAACTGATGCTTTGTCAATATATTGCATCGTGTTGTGTTACATA
TACATATTATAGCTTCCAtggaaatttttggaaagataATATTTAGATGA
TGATATCGGAAAgatgaacatttttttataaattattttctttttttgaa
ataagaatttactattttgatttttagtgacaaaaatcgttttcaaattt
aaaccATGACTTGAAATGGTCTTGATCCCTTTTAATATTGATTGTGTGTA
CTGCTGGACGAAATATACAGTTTCTTAAAATAAGGTTGATAAGAATTTTT
ATCGTTTATAGTGTTGTGAACAAATAAGTTTATTTATTTGccattatttg
aaaacaaaaatttataattatgtAGAAATATtgttaataaaagaaaaatt
ttaatgctTATatgttttttgtgaaaaaaatattgttggaAATAATTTGA
TCTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014039-exon-sc0000180-1491911889:125189..127745 | TCONS_00014039-exon-sc0000180-1491911889:125189..127745 | Clytia hemisphaerica | exon |
| TCONS_00014039-exon-sc0000180-1510915933:125189..127745 | TCONS_00014039-exon-sc0000180-1510915933:125189..127745 | Clytia hemisphaerica | exon |
| TCONS_00014039-exon-sc0000180-1575043694:125189..127745 | TCONS_00014039-exon-sc0000180-1575043694:125189..127745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:125189..127745 + |
Blast
The following BLAST results are available for this feature:
|
