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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014036 ID=TCONS_00014036|Name=TCONS_00014036|organism=Clytia hemisphaerica|type=transcript|length=1121bp
GTCTTTAATTTTGCTCAGAAGATATCGCTCTGCAAATAAATGGCCTTTAT
CTATCCGACTCAGTATGAAGGGTCGACAATATTTCGAGTTCTTAACCGGC
AACCATACTTTAAACGCTATCTTACAATCACTACATGTACGTCAAATTCG
AACCGGCCAACTCCTGTTGAAAAAAAATCGGAATTGTCAGAACTAACAAC
GGCCGATAATGAAAGTTTCTCGCTAGACCCGATAATCGCCGACGAGAATG
TCGACCTTTGGGAGAGTGTAGAAGCTGATATTACGGATCTGACAACTTTC
AATTTGTTGAAAGAGCAATATAATTCACGTGTTCAAGAAATGGACGAGAA
AACAACGGCACAAACTAAACAAAATGGAGAAGCAACGATTGTGGCGCCCA
TTAAAAGCAAGCGAAATTTCCGTAAGAAACCGGTCCATGTTAAGAAGCAG
GGTGATCAACTGACATACCAGAGTGAGCAAAATGTCCTTGCAGAAATAGA
TATTTACACCTTTCTGAAAATGcCGACCAACGCCATAAACCTGTTCAACT
ACCACCGAAGACATGGTCACAAATTCAGTTTGGATGCTTACAACAAAGTC
ATTCATATTTGGGCATCCCAAGGCAGTTGGAGGAGTGTCCAAATGCTGCT
CAAGAACCTAACTAAGGAAGGGCTAGAACCAAACTATCAAACTTATGCTG
GATTACTTGAAACTTGTGGGAATATTAAGGACCAACGGAAAACAGAAAAA
ATCCTCTTTGAAATGGAACTCAAGGGATTCAAAGTAAAGGAAGTGTTCAA
CCAATCAATATTAACAGCCAATCAAATTTCATCAGTCGTACGCGCGGTCG
GAAAAATTCATCCAAACATAGTAGAAGAGTATCAATTGAACCAAACAGTT
CGAAACTTTGGCGAAAGAGAAACCACAGTTGATCTACTTCGAGATGCCAA
TGTCTTCAAGCTAATAAGTGAACAAAAAGAAAAGGAATTAACAGGGTATG
TGAAAATGAAGTCCATAGACACGACAAAGATGAACGATAAAAAGACCAAG
AAACGCGCCGATCAAAATAAAGGAATCACCCAGAAATGGAGAAATGATTT
TATCATAGAAATCAATCAAGC Run BLAST on NCBI transcript from alignment at sc0000180:56169..65094+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014036 ID=TCONS_00014036|Name=TCONS_00014036|organism=Clytia hemisphaerica|type=transcript|length=8926bp|location=Sequence derived from alignment at sc0000180:56169..65094+ (Clytia hemisphaerica)
GTCTTTAATTTTGCTCAGAAGATATCGCTCTGCAAATAAATGGCCTTTAT
CTATCCGACTCAGTATGAAGGTGCGTCACCTCTCTTGTCACTTCCTTTTT
ACCCCATACATTATATTTAACATGAATTAGAACAAATTTCGAACCTCTTG
ATTCAAACCCAACTTTCTCAAAAGATATCATCGACTCAGCTTCGAGGAAT
cgaattttaaagaaataattcgAAAGCAAAAGCATAATGTGCTGAaaatc
atcatcactgtgaaaattttttcaaaaatattcattcaatcaaaagatat
caaacaaagtttattggtggttgactctataaagtagtaaaaaacgacaa
aaaaacagccttttgtcgatcaaccaataacaaactttgtttgatatctt
ttgattgaatgaatatttttgaaaaagattttcacagtgatgatgatcca
AGATTGAaaaatcactcctgtgaaaatggtaattataccatatttctaca
agaagttgattttttttttcttcatttttcattttcatttttctttattt
ttcaaatctttttgcttgataatattccacttacaaatatcttttcaacg
agcacaaaatcgcaacttcattcaaattttatcaaaagttacaggcattt
tcgtctcagctgcaaattattttgagacagactttaagcCAATTTTATCT
TCATACCTTTCGCTGAAGCTTATAGACCGATTCCGTGTGACGTTATTTTT
ACCCACGATCAGCCATTTTGGTTGAAAGAATAATGTACAGGATGATTAAG
TAACACCTTGACAGCTCAAAGTCttcaaatatttcccgtttggACCAGCG
CatagtttttttgtttgttttggctTCGTGAGTGAAATttatgtcagtta
ggaacaggTAGCTTGCTTGAGGATAGCTCCTAATTGGATTTTGGGGAATC
GGTTTATAagcagattttcaaattttaattccaATCATGTTCATTATTAC
TTGTTATTAATTAAACAGGGTCGACAATATTTCGAGTTCTTAACCGGCAA
CCATACTTTAAACGCTATCTTACAATCACTACATGTACGTCAAATTCGAA
CCGGCCAACTCCTGTTGAAAAAAAATCGGAATTGTCAGAACTAACAACGG
CCGATAATGAAAGTTTCTCGCTAGACCCGATAATCGCCGACGAGAATGTC
GACCTTTGGGAGAGTGTAGAAGCTGATATTACGGATCTGACAACTTTCAA
TTTGTTGAAAGAGCAATATAATTCACGTGTTCAAGAAATGGACGAGAAAA
CAACGGCACAAACTAAACAAAATGGAGAAGCAACGATTGTGGCGCCCATT
AAAAGCAAGCGAAATTTCCGTAAGAAACCGGTCCATGTTAAGAAGCAGGG
TGATCAACTGACATACCAGAGTGAGCAAAATGTCCTTGCAGAAATAGATA
TTTACACCTTTCTGAAAATGGTAAGAGCAATTTCATTATGACACATGCCA
GCATATTCTTTTTGTGAACTTTGCAAATTGTTTGCATAGCATTTTTAAGC
ATTCTATTCGAAACACTTGTTGAAATATCGCCTTCAATTGAAAACTGAAT
ATCTTTTTGAATCAGTCGATCGCAAAAAATTCGGAGATGTCGATCCAAAT
CATTGACTCCCGTTTCCCGTTTCAGTATGGCCTAAGTTTCATATTCAATA
ATAtcaaatgttttgatcgcaTAAGTTTTTATGTCTTTCAATAAGCATTT
CAACAAAACAAGTGTGGTAAATCAATGCCATAGGAGTGCTCGATTAGTTA
AGAACCAGAGTCATGTATCAATATAGATGTACCGATAGATTCATCTCAAG
CATTTCAACAAgaaatcttcaaatatttttagcCGACCAACGCCATAAAC
CTGTTCAACTACCACCGAAGACATGGTCACAAATTCAGTTTGGATGCTTA
CAACAAAGTCATTCATATTTGGGCATCCCAAGGCAGTTGGAGGAGTGTCC
AAATGCTGCTCAAGAACCTAACTAAGGAAGGGCTAGAACCAAACTATCAA
ACTTATGCTGGATTACTTGAAACTTGTGGGAATATTAAGGACCAACGGAA
AACAGAAAAAATCCTCTTTGAAATGGAACTCAAGGTAACTCTACAGCCCT
ACTTTTGGTCTATTTTCATTTCACTTCTGCACTAATAAAGAGTTGACCTT
CAACTGGTCTCGAGACTTCCTATACTGCTTAAATAAAAATCCTCAAGATT
TTAAAATAAGTGTTAAAAAAGTGCCAGTTGCACTTAAACACATTTAAAAC
ATTTATAATTAAATGTACCCAGGTGTACCAAGCCTCGTTTTTCTAGATTC
TCTTCATTCAATTAAATTTGCATTTAATTCGACCCATGATCTAATTAATT
AGTTAACAACTTAAAAACCTCCTTATGGCGTCTAATTCAGGGATTCAAAG
TAAAGGAAGTGTTCAACCAATCAATATTAACAGCCAATCAAATTTCATCA
GTCGTACGCGCGGTCGGAAAAATTCATCCAAACATAGTAGAAGAGTATCA
ATTGAACCAAACAGTTCGAAACTTTGGCGAAAGAGAAACCACAGTTGATC
TACTTCGAGATGCCAATGTCTTCAAGCTAATAAGTGAACAAAAAGAAAAG
GAATTAACAGGTAGGTTTAAATGTCTGATCGTCCTTCAAGCTTTCTTTGT
TTTTCATTTCTAACAACGAAATGAATAGATAAAGTAACCACGTCTATCAT
CGAAATCGAAATATCAAACAGAACAAGGACAGAGATAAAGTTGTTTGAAC
TCTTTCACTTGACCCACCTCTTACCCCTCTCCTTGAGCtcttcaatcttt
ccttgatttctaagatcttttcttgcaggtctatcatcgaaatcgaaaga
ttgagcagcgcaaggagaggctccgccgaaatacgcgctcggtTTTTGCT
GTTAAAGAGCCAaattgtttgaactctttcacttgacccacctcttaccc
ctctccttgagctcttcaatcttccttgatttctaagatcttttcttgca
ggtctatcatcgaaatcgaaagattgagcagcgcaaggagaggctccgcc
gaaatacgcgcNTCGGTTCCGTTATGAAAGTAAGTAGTCTTATTAGAATA
GCCTACGCGATGGCTTTCTACCTCGTATCTTTTGAAATACCAACATAATG
TTTCGATTAGGTGCTTAACTAAGCCTCATTTACAACTTTATTTACaatta
gatattttgcaaagtTGCCTCAAATTACTACTTGGGCGAAATGGATATCG
GGTATGTGTGAGCCATAAGGATCCCTTCTCGAAAGTCTctaaaaggggta
caaaaacgaTAAATTAGAAATTGGTTCTCTGAAGGGGTCCCAAACTtacg
aaatattaaaaattgagTCCCTCAAAGGGTCTTAAAATCTGGTCATCTGA
GCtaaatattggaaaaataatctttaaaggGTCGCAAAAACGTCGAAATC
AGTCTCTCAAAGAGTNTATTAAAAATTGAGTCCCTCAAAGGGTCTTAAAA
TCTGGTCATCTGAGCTAAATATTGGAATAATAATCTTTAATAAAGGGTCG
CAAAAACGTCGAAATCAGTCTCTCAAAGAGTTCAACGAGTTCAACTTTGG
CTCAGACATACCCTttacctcgcaaacctagtaccctccAGGTAGCTACA
ATACTATAGCAACTAATTCTACACCCCGTTCTCGcagacccggtggaaaa
atTGGCCCAATATCATCTCCCAGCAGCTCCCAGCCATAAAAAGCAAGGAA
ATatcgatccccatcgagtttcagtccctTTTTTTAAAGCCCATTTGCTG
AAAAAcatgtctgtgagaagggggtgtaattaAATTACTGACTAAGTCTA
AAAGCACTATCAGGACATCGTCAGCCTTAGAACTCCCAATAATAAAATTG
ACAAACATTTTTTGAGGGAGAGTCAAGATTAATCGGCGCAATGAAATTTC
GTCACTTATGAATTTTATCTTGATTTCAGAGATTTTTGTTAGATATTGAG
TTGAAACTCGAGAAAGTTGatgaaaaatagcgaaagaaaaGCATATTTTG
CAGGAAAAGACTTGAAGATGTTGCAAGCTAGCAgttagtctgaatcacag
aaTATAAAAAAGTCAGTAGCATATGATGCAGGTAAGTATACTCCAGTTGG
CTAAAAATACCATACTTTAAGCCTTAACCTCCTAGCTGCTTCAGTCGAAA
AAGTTGCAAAACTGAGAATTTGGTGCAGTTTTTCAGAGAAGTTTGTAAAA
AAAGGAGTACATTTTTTACATAAAAGTAAATTCACTTACTGATTGAAGAG
TAAGACTATTTGCTTATGTTGAGAAACTTTCTCTATCATGGACAGTCGGG
GTCAGAGGCTAAGGTTTGANGGTGTTGTCTGTTCAAATTGGGGTGCTAAC
CTTTCTTAAGGCTCTGGCAGTTCTTATATccgtattttcaaaatttcctt
tcttgttcaaaatagcaaatttttgagtcaaaaagagaaaaaatatctGA
AACAATTTACTGTACTCCCCGCTCTCATTAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNctccttgagctcttcaatctttccttga
tttctaagatcttttcttgcaggtctatcatcgaaatcgaaagattgagc
agcgtaaggagaggctccgccgaaatacgcgctctctttttgctgtgaaa
gagccaaagttgtttgaactctttcacgtgacccacctcttacccctctc
cttgagctcttcaatctttccttgatttctaagatcttttcttgcaggtc
tatcatcgaaatcgaaagattgagcagtgCAAGGAAAGGCTCCGCctaaa
tacgcgctcgctttttgctgtgaaagagccaaagttgtttgaactctttc
acgtgacccacctcttacccctctccttgagctcttcaatccttccttga
tttctaagatcttttcttgcaggtctatcatcgaaatcgaaagattgagc
agcgcaaggagaggctccgccgaaatacgcgctcgctttttgctgtgaaa
gagccaaagttgtttgaactctttcacgtgacccacctcttacccctctc
cttgagctcttcaatctttccttgatttctaagatcttttcttgtaggtc
tatcatcgaaatcgaaagattgagcagcgcaaggagaggatccgccgaaa
tacgcgctcgctttttgctgcgaaagagccaaagttgtttgaactctttc
acttgacccacctcttacccctctccttgagctcttcaatctttccttga
tttctaagatctNgccaaagttgtttgaactctttcacttgacccacctc
ttacccctctccttgagctcttcaatctttccttgatttctaagatcttt
tcttgcaggtctatcatcgaaattgaaagattgagcagcgcaaggagagg
cttcgccgaaatacgcgctcgctttttgctgtgaaagagccaaagttgtt
tgaactctttcacttgacgcACCTCTCatccctctccttgagctctcaAT
ATAATATAATTCAATATAATATTGGCTTACCCTTTGTCTTGTGTTTCCCA
TTGTGTTTTGGATATTTGCCCTCCTTGCATTTTCAAATGGTTGTCTGTTT
TGAGTCTCTTGTGCATGGCTATTCCATCTTATTGGTTGAGCTGTTTTCtg
cttttttcaaattaattgaattCTTCTTTCGATTAAATTATTTGacgtta
atttttttatttgatttatcgATTTATTTTGATACGTCATTCAAAGAATT
GTTTGAAAAGTCGCCAAAAATTGTTGCCTTAACTATCTTCCAATTAACAC
CATTTGTTCTAGGTAACCTGGTATCTTCCCTTGTTCTTTTTCCACagact
attttaaattttatcatttttctatCACTTTTTTACCGACATTGGGCTGT
TgcataaaatttccatatatgTGGGTGGACGAGccttttcaagtgaaaac
aaatttcttggaaaagtgTAGGTGCCCCCTGGAAAacggcaaaatttgca
aagaacCCTTAGAAAAGATTCTTTCAtgtcttaaagtgagggtggacgaa
ctaagttgttcaccccctggaaattcaagAATAATTGTTTACCCACTGGA
TAAATTAAAAATCACTTCTGCAGACCCCcctggaattttttttccttaAT
AAAAGTCAGTAGTAAAGTTGTCAGGTTCAAATCGTTGAGCCGATGAAAAA
ACTGGGCAATACCATACGATTTAACCTAATAAACATAGAAACATAGAAAT
TTCTTTTCTACATAAAGTTTGGAAACTTTTAAACTGAACGATCTAATACT
CAAGGCTTTTTCGTGAACGGTGGCTCTAGTTCTCTTACTCAACGTCGAAA
ACCTTTTATTGATTTCAAGAACTAtctttaatttttcttcatACAAGAAA
CATTGACTATGGGGGGAGggacagtcaggcaaattgaccaaCGTGTATTT
GCAGCGGCTAAGGGTATGTTTATTAAGATAGCAGAAATGCAATGTCAGGA
AATCCAGGAAAAACTGCAAATTTTCGCCggaaaattcagattttttactc
tagagttgaaaatttaagaaaaatgcactgtaagggtatgaatttcacca
tatttttgctgcactgtaaggatgcaattctaaaagccaattttttcgtc
ACACATACTGTCACTTGGTAAGCCTACTGCCCCTACCTACGCCGGCGGCC
AAAGGGGAAAATGTTCGCTGCGCAACATCTTATAATCAACAAAAATGATA
GCAACAGTTAACTGCAAGCAATAAAAAAAGAGGGTTAGGCTAGACAACTG
TATGTCATaacaagtaaaacaaaaagagaaaagaaaatgacTTACAGACA
TTTTAGTCGATGATATCTGCTACTTCTGAACTTGCTTTTCCATTCTTGCT
ACCACGAATAATGAAATACTTTTGTGAAATGTTTTTAactgtttgaaaaa
tatttgacgtcactttttttttgattttcattgacgtcattttttaatca
attcaaaatttcgtcatCTCAGCAAGATGAGTCAACGGTCCAGCTCAAAA
TTATGAGAAATAATAATTCTAttgactttttcttgcttgtttTTCCCAGG
GTATGTGAAAATGAAGTCCATAGACACGACAAAGATGAACGATAAAAAGA
CCAAGAAACGCGCCGATCAAAATAAAGGAATCACCCAGAAATGGAGAAAT
GATTTTATCATAGAAATCAATCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014036-exon-sc0000180-1491911889:56169..56238 | TCONS_00014036-exon-sc0000180-1491911889:56169..56238 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1510915933:56169..56238 | TCONS_00014036-exon-sc0000180-1510915933:56169..56238 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1575043694:56169..56238 | TCONS_00014036-exon-sc0000180-1575043694:56169..56238 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1491911889:57187..57638 | TCONS_00014036-exon-sc0000180-1491911889:57187..57638 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1510915933:57187..57638 | TCONS_00014036-exon-sc0000180-1510915933:57187..57638 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1575043694:57187..57638 | TCONS_00014036-exon-sc0000180-1575043694:57187..57638 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1491911889:58051..58302 | TCONS_00014036-exon-sc0000180-1491911889:58051..58302 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1510915933:58051..58302 | TCONS_00014036-exon-sc0000180-1510915933:58051..58302 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1575043694:58051..58302 | TCONS_00014036-exon-sc0000180-1575043694:58051..58302 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1491911889:58609..58828 | TCONS_00014036-exon-sc0000180-1491911889:58609..58828 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1510915933:58609..58828 | TCONS_00014036-exon-sc0000180-1510915933:58609..58828 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1575043694:58609..58828 | TCONS_00014036-exon-sc0000180-1575043694:58609..58828 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1491911889:64968..65094 | TCONS_00014036-exon-sc0000180-1491911889:64968..65094 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1510915933:64968..65094 | TCONS_00014036-exon-sc0000180-1510915933:64968..65094 | Clytia hemisphaerica | exon |
| TCONS_00014036-exon-sc0000180-1575043694:64968..65094 | TCONS_00014036-exon-sc0000180-1575043694:64968..65094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:56169..65094 + |
Blast
The following BLAST results are available for this feature:
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