TCONS_00014031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014031
Unique NameTCONS_00014031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014031 ID=TCONS_00014031|Name=TCONS_00014031|organism=Clytia hemisphaerica|type=transcript|length=236bp
AAGCATTGAGCACAGTCATCTaaCTGCTGATAGTGAAAGAACATTGACTG
AGAGTGAAAGAACATTGACAGCATTAAACTTGTCAACACATGATGAAGGA
AAAATGAGTGTGTTTTTACAGAAATGGCAATGAATGTGTCAAGGAAATTT
ATTCAGACAAATAGAGGGAATCAGAATCAAGTGATGAAGAAAAATCTGCA
CTAAATGTAGCATCCTTGATGCTGGACAAATAAGTG
Run BLAST on NCBI

transcript from alignment at sc0000180:4447..5111+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014031 ID=TCONS_00014031|Name=TCONS_00014031|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0000180:4447..5111+ (Clytia hemisphaerica)
AAGCATTGAGCACAGTCATCTGTGAGTATAACCTTTTTAAACTGAAATTC
TATTACTACACATTTTAATGGAACTGCTGTAAACAACGTCACTTCTCAGA
GCTTAATGAATTACAAAATTTTTCTAgctattttcattgaaaagtatgAA
TTCTGGCCCAAATACTTTTAAAAGGCTTTTTCGTGAAGGTGAATGCCTCT
TTATTAAATTAAGAATTCTTAACAAATTGCAAGAGTTTATGCTTGTATTC
tcacattcaatttttttttaaatttgaaaatctttgaagctgtgaaatca
aaattttaaatgtcCCTAGTAGTAAAATCAATCATTGCCTTAATTTTAAG
ACtgacatttttaaacatttttagaaCTGCTGATAGTGAAAGAACATTGA
CTGAGAGTGTAAGAACATTGACAGCATTAAACTTGTCAACATATGANTAG
AACTGCTAATAGTGAAAGAACATTGACTGAGAGTGAAAGAACATTGACAG
CATTAAACTTGTCAACACATGATGAAGGAAAAATGAGTGTGTTTTTACAG
AAATGGCAATGAATGTGTCAAGGAAATTTATTCAGACAAATAGAGGGAAT
CAGAATCAAGTGATGAAGAAAAATCTGCACTAAATGTAGCATCCTTGATG
CTGGACAAATAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007849XLOC_007849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014031-exon-sc0000180-1491911889:4447..4467TCONS_00014031-exon-sc0000180-1491911889:4447..4467Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1510915933:4447..4467TCONS_00014031-exon-sc0000180-1510915933:4447..4467Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1575043694:4447..4467TCONS_00014031-exon-sc0000180-1575043694:4447..4467Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1491911889:4821..4841TCONS_00014031-exon-sc0000180-1491911889:4821..4841Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1510915933:4821..4841TCONS_00014031-exon-sc0000180-1510915933:4821..4841Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1575043694:4821..4841TCONS_00014031-exon-sc0000180-1575043694:4821..4841Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1491911889:4918..5111TCONS_00014031-exon-sc0000180-1491911889:4918..5111Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1510915933:4918..5111TCONS_00014031-exon-sc0000180-1510915933:4918..5111Clytia hemisphaericaexon
TCONS_00014031-exon-sc0000180-1575043694:4918..5111TCONS_00014031-exon-sc0000180-1575043694:4918..5111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:4447..5111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.81151	13.994	2.97467	2.98766	6.4681	3.06671	0	2.78846	19.0351	12.6245	15.4648	16.1346	13.9003	18.3759	25.5054	27.0203	20.3394	27.0217	10.8121	17.8931	24.1096	11.8937	12.9974	9.96217	2.05984	5.51506	12.2609	13.8167	11.3416	9.86734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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