TCONS_00014025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014025
Unique NameTCONS_00014025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014025 ID=TCONS_00014025|Name=TCONS_00014025|organism=Clytia hemisphaerica|type=transcript|length=767bp
NAAGGTATCACATCCGTTGCATATTTGACCAACACTTGGTGCTCTTTTAT
GGAACCTTTGTTTACCAGGGTTGGAGGGTGTTGAGGTGATAACGAGTGCT
TTTAAAGCATGACATTCAGCTTGTAGACCATCTAACTGTAATTCTGcttc
gtggaatttcttttCCCAAGACATGCGTGCCACATTAGCTTCAATGACCA
TTTTATTTGCTTCCTCAAATAGACTAGCAGTCAGCTCCTCAATTTCTTGA
TCAACTGTATCTCGCACTTTAGACAGCTCTTGACATTGCGAATCCCTGGT
TCTCAGCTCCTGTTGTGCACGTTCCAAATCTTTCCGCAATTTATCGAAAG
CTTGTCTAGAAAAATCTAAAGATTCCTCACTTACTTCTTCCAAAGACACT
CCCTCTATAGGGGTGGCGCCAAGGGCGGACCCATAACCTGAAATAGATCG
AACACGTCCAATATCACCATTACCAATTGAGAATCCAGACACAGTACGCG
ACCTTGTCACCGGCAATAAATCTTCACCAGTATGATGAATATGTGTTGAA
AGCTTTTTCTTAACTTTACTGCATTGTGATGCATTGCTTTTTGAGCGTAT
TATGTTATCAGCATTGGTCATATCTGGCTCACTGGCCGTTCTTTGAAGAG
AAGTTCCACCACCATTGTTGTTATCATTGAGACTTGCAGATTCTGATGAG
AGCATCCCacaaaatgtatcaaaatatttaatgatgtttttttaaattct
tatttctaatgtaaata
Run BLAST on NCBI

protein sequence of TCONS_00014025-protein

>TCONS_00014025-protein ID=TCONS_00014025-protein|Name=TCONS_00014025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MLSSESASLNDNNNGGGTSLQRTASEPDMTNADNIIRSKSNASQCSKVKK
KLSTHIHHTGEDLLPVTRSRTVSGFSIGNGDIGRVRSISGYGSALGATPI
EGVSLEEVSEESLDFSRQAFDKLRKDLERAQQELRTRDSQCQELSKVRDT
VDQEIEELTASLFEEANKMVIEANVARMSWEKKFHEAELQLDGLQAECHA
LKALVITSTPSNPGKQRFHKRAPSVGQICNGCDTX
Run BLAST on NCBI

transcript from alignment at sc0000175:380058..380824

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014025 ID=TCONS_00014025|Name=TCONS_00014025|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at sc0000175:380058..380824 (Clytia hemisphaerica)
tatttacattagaaataagaatttaaaaaaacatcattaaatattttgat
acattttgtGGGATGCTCTCATCAGAATCTGCAAGTCTCAATGATAACAA
CAATGGTGGTGGAACTTCTCTTCAAAGAACGGCCAGTGAGCCAGATATGA
CCAATGCTGATAACATAATACGCTCAAAAAGCAATGCATCACAATGCAGT
AAAGTTAAGAAAAAGCTTTCAACACATATTCATCATACTGGTGAAGATTT
ATTGCCGGTGACAAGGTCGCGTACTGTGTCTGGATTCTCAATTGGTAATG
GTGATATTGGACGTGTTCGATCTATTTCAGGTTATGGGTCCGCCCTTGGC
GCCACCCCTATAGAGGGAGTGTCTTTGGAAGAAGTAAGTGAGGAATCTTT
AGATTTTTCTAGACAAGCTTTCGATAAATTGCGGAAAGATTTGGAACGTG
CACAACAGGAGCTGAGAACCAGGGATTCGCAATGTCAAGAGCTGTCTAAA
GTGCGAGATACAGTTGATCAAGAAATTGAGGAGCTGACTGCTAGTCTATT
TGAGGAAGCAAATAAAATGGTCATTGAAGCTAATGTGGCACGCATGTCTT
GGGaaaagaaattccacgaagCAGAATTACAGTTAGATGGTCTACAAGCT
GAATGTCATGCTTTAAAAGCACTCGTTATCACCTCAACACCCTCCAACCC
TGGTAAACAAAGGTTCCATAAAAGAGCACCAAGTGTTGGTCAAATATGCA
ACGGATGTGATACCTTN

Coding sequence (CDS) from alignment at sc0000175:380058..380824

>TCONS_00014025 ID=TCONS_00014025|Name=TCONS_00014025|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000175:380058..380824 (Clytia hemisphaerica)
ATGCTCTCATCAGAATCTGCAAGTCTCAATGATAACAACAATGGTGGTGG
AACTTCTCTTCAAAGAACGGCCAGTGAGCCAGATATGACCAATGCTGATA
ACATAATACGCTCAAAAAGCAATGCATCACAATGCAGTAAAGTTAAGAAA
AAGCTTTCAACACATATTCATCATACTGGTGAAGATTTATTGCCGGTGAC
AAGGTCGCGTACTGTGTCTGGATTCTCAATTGGTAATGGTGATATTGGAC
GTGTTCGATCTATTTCAGGTTATGGGTCCGCCCTTGGCGCCACCCCTATA
GAGGGAGTGTCTTTGGAAGAAGTAAGTGAGGAATCTTTAGATTTTTCTAG
ACAAGCTTTCGATAAATTGCGGAAAGATTTGGAACGTGCACAACAGGAGC
TGAGAACCAGGGATTCGCAATGTCAAGAGCTGTCTAAAGTGCGAGATACA
GTTGATCAAGAAATTGAGGAGCTGACTGCTAGTCTATTTGAGGAAGCAAA
TAAAATGGTCATTGAAGCTAATGTGGCACGCATGTCTTGGGaaaagaaat
tccacgaagCAGAATTACAGTTAGATGGTCTACAAGCTGAATGTCATGCT
TTAAAAGCACTCGTTATCACCTCAACACCCTCCAACCCTGGTAAACAAAG
GTTCCATAAAAGAGCACCAAGTGTTGGTCAAATATGCAACGGATGTGATA
CCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007844XLOC_007844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014025-exon-sc0000175-1491911889:380058..380824TCONS_00014025-exon-sc0000175-1491911889:380058..380824Clytia hemisphaericaexon
TCONS_00014025-exon-sc0000175-1510915933:380058..380824TCONS_00014025-exon-sc0000175-1510915933:380058..380824Clytia hemisphaericaexon
TCONS_00014025-exon-sc0000175-1575043694:380058..380824TCONS_00014025-exon-sc0000175-1575043694:380058..380824Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014025-proteinTCONS_00014025-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:380058..380824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65003	3.45624	2.00666	1.40859	17.1483	12.399	13.0512	12.9329	7.55535	13.3365	12.6514	7.44897	10.5376	10.6543	9.53292	9.6639	13.2234	11.7057	6.98482	8.25497	9.76909	10.2553	12.0989	13.1373	18.0842	21.2622	14.3716	10.6121	19.7621	21.0266
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009449Sec2_N
Blast
[Close]
BLAST of TCONS_00014025 vs. Swiss-Prot (Human)
Match: RAB3I (Rab-3A-interacting protein OS=Homo sapiens GN=RAB3IP PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.059e-26
Identity = 54/110 (49.09%), Postives = 82/110 (74.55%), Query Frame = -3 
Query:   46 QAFDKLRKDLERAQQELRTRDSQCQELSKVRDTVDQEIEELTASLFEEANKMVIEANVARMSWEKKFHEAELQLDGLQAECHALKALVITSTPSNP-------GKQRFHK 354
            + +++L+++L +AQ+EL+ +D +C+ LSKVRD + QE+EELTASLFEEA+KMV EAN+ + + EK+  EA+ ++D LQAE  ALK LV++S+P++P       GK  F K
Sbjct:  172 KGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKK 281
The following BLAST results are available for this feature:
BLAST of TCONS_00014025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3I1.059e-2649.09Rab-3A-interacting protein OS=Homo sapiens GN=RAB3... [more]
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