TCONS_00014025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014025-protein
Unique NameTCONS_00014025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014025-protein ID=TCONS_00014025-protein|Name=TCONS_00014025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MLSSESASLNDNNNGGGTSLQRTASEPDMTNADNIIRSKSNASQCSKVKK
KLSTHIHHTGEDLLPVTRSRTVSGFSIGNGDIGRVRSISGYGSALGATPI
EGVSLEEVSEESLDFSRQAFDKLRKDLERAQQELRTRDSQCQELSKVRDT
VDQEIEELTASLFEEANKMVIEANVARMSWEKKFHEAELQLDGLQAECHA
LKALVITSTPSNPGKQRFHKRAPSVGQICNGCDTX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007844XLOC_007844Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014025TCONS_00014025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009449Sec2_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 177..204
NoneNo IPR availableCOILSCoilCoilcoord: 113..161
NoneNo IPR availableGENE3D1.20.120.330coord: 20..205
e-value: 1.3E-6
score: 27.6
NoneNo IPR availableSUPERFAMILY144284Sec2 N-terminal regioncoord: 116..207
IPR009449GDP/GTP exchange factor Sec2, N-terminalPFAMPF06428Sec2pcoord: 137..197
e-value: 9.9E-12
score: 44.6

Blast
[Close]
BLAST of TCONS_00014025-protein vs. Swiss-Prot (Human)
Match: RAB3I (Rab-3A-interacting protein OS=Homo sapiens GN=RAB3IP PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.247e-27
Identity = 60/136 (44.12%), Postives = 93/136 (68.38%), Query Frame = 0 
Query:   96 GATPIEGVSLEEVSE----ESLDFSRQAFDKLRKDLERAQQELRTRDSQCQELSKVRDTVDQEIEELTASLFEEANKMVIEANVARMSWEKKFHEAELQLDGLQAECHALKALVITSTPSNP-------GKQRFHK 220
            G+  I G+S + +S       L+   + +++L+++L +AQ+EL+ +D +C+ LSKVRD + QE+EELTASLFEEA+KMV EAN+ + + EK+  EA+ ++D LQAE  ALK LV++S+P++P       GK  F K
Sbjct:  146 GSDDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKK 281
The following BLAST results are available for this feature:
BLAST of TCONS_00014025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3I1.247e-2744.12Rab-3A-interacting protein OS=Homo sapiens GN=RAB3... [more]
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