TCONS_00013955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013955
Unique NameTCONS_00013955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013955 ID=TCONS_00013955|Name=TCONS_00013955|organism=Clytia hemisphaerica|type=transcript|length=1320bp
gagacaaatattcaattattttggatgttcttatagaaaacgtATTGAAG
CTCTCCTTTGTAGATTGTGAAAGAGTTATAATCATGTGATGACACATTAT
ATGGTCTGTTTCATTTCTTAAACTTTGTTTTATGTTATAAGTGACTTTTA
TGTTACTTTGTTACAAGGGAAGCTGTCAAGGGTTGCNTATGTTATAAGTG
ACTTTTATGTTACTTTGTTACAAGGTAAGCTGTCAACGGTTAAGTGTAAA
ACTAAAAACAGTTCTGTAAAAGCCAAAAAGCTTTCTTTTCTTATCAAATC
GCAAGTAGAAAAAGAAGGTTGTTGGTTTTTGAGCAATATAACttatcaaa
aaatgaagattgcTTTTGTTTTGGCAGCCCTGGTGGCTGTTTGCTTTGCT
GCACCACAAagAGTTGAGGTGGAACAAATTCCAATGATCAAATTAGTCAA
AGCATCTAAAATTCAAAGAAACAATAACTTGGGTTTCAGTTACTCTAACT
GTGCTGAAGGCTCTGACTTGAACATCAAATCATTGAGCATTTCTCCAGAT
CCAATCACCATCCCAGGAAACGTAACCATCGGGTTAGATGCTGCGATCAG
TACCGAGATCACCGACATTACATCTGCCGCTCTTGTTCTTAAACGCAAAA
TCTTTGGTGTCTTTGTTGAAATTCCATGCGTTGATAATCTTGGATCATGC
ACTTACAACGATGTCTGTTCTTTATTGGCTAAAATCGAATGTCCCCAACA
ATTGATAGACATGGGGTTCAAATGCCATTGTCCATTCCCTGCAAAAGAGT
TCAACGTACCTGCTGGAACTGTTATTGCATTACCAAAGCTTCCATTACCA
TCATTTGCCGAAAATGGCGATTACGAAGCTAAAGTGACACTAAGTAATGG
ATCAACCGTTTTGGCTTGTTATGATTTCAAAGTTTCCTTGAAAGCGAATA
GCCAAGATGAACAATACCATAACGACGTTGAAATTACCGTTTAAAGATCC
GATTCGTTTCAAAATGTTGTCGTAAAGGGCTATATACACTACACAattat
attgtcaggcaatatattgacgatatattgctgaataccggcaatatatt
gaaaaaatgtTCGCAATACATTGTCAATTCGATTCGCAATATTCTCGAAT
ATTGCAACAATAAAGGGGATTGTTtatgtttacagaaagaaaattccttt
ttataatggTACACatgttgtttacttcgtacattacggtccgcaaacca
tattgttgaatattgttcgtcaatatattgtgtagtctaagtagctcTTA
AGGGCTGATAGATATCttgt
Run BLAST on NCBI

protein sequence of TCONS_00013955-protein

>TCONS_00013955-protein ID=TCONS_00013955-protein|Name=TCONS_00013955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MKIAFVLAALVAVCFAAPQRVEVEQIPMIKLVKASKIQRNNNLGFSYSNC
AEGSDLNIKSLSISPDPITIPGNVTIGLDAAISTEITDITSAALVLKRKI
FGVFVEIPCVDNLGSCTYNDVCSLLAKIECPQQLIDMGFKCHCPFPAKEF
NVPAGTVIALPKLPLPSFAENGDYEAKVTLSNGSTVLACYDFKVSLKANS
QDEQYHNDVEITV
Run BLAST on NCBI

transcript from alignment at sc0000175:224009..230130+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013955 ID=TCONS_00013955|Name=TCONS_00013955|organism=Clytia hemisphaerica|type=transcript|length=6122bp|location=Sequence derived from alignment at sc0000175:224009..230130+ (Clytia hemisphaerica)
gagacaaatattcaattattttggatgttcttatagaaaacgtATTGAAG
CTCTCCTTTGTAGATTGTGAAAGAGTTATAATCATGTGATGACACATTAT
ATGGTCTGTTTCATTTCTTAAACTTTGTTTTATGTTATAAGTGACTTTTA
TGTTACTTTGTTACAAGGGAAGCTGTCAAGGGTTGCNTATGTTATAAGTG
ACTTTTATGTTACTTTGTTACAAGGTAAGCTGTCAACGGTTAAGTGTAAA
ACTAAAAACAGTTCTGTAAAAGCCAAAAAGCTTTCTTTTCTTATCAAATC
GCAAGTAGAAAAAGAAGGTTGTTGGTTTTTGAGCAATATAACttatcaaa
aaatgaagattgcTTTTGTTTTGGCAGCCCTGGTGGCTGTTTGCTTTGCT
GCACCACAAGTAAGTtagatttcttttatttatcTATGGTCGTCGTTTTG
GGTCCCAACTGGTGCACTTTAAGGGTGAACTCTTAAGGGTTTTTTGCCTT
GTAATggtcaaaagatttcaaaagaacGCACCGTAAGGGCCTCGCGTACG
GTCGTTTTTAAATCGAGTGCCTCCCCCCCCCCGTGTTCAGGTAATATTTC
ATTaagtttttcaggatttttcagCTTCTTTTTCTGCGTAGGATAGCTGG
CTGAAGattggaaaggttttttttcaGTACTTTAATACCTCGGGGAATTT
TCGATTTGGGAAATGTTTGGTCAGAGCCACAGGTGAACGTCTGCTGCGAG
AAGAAATTGTCACGAGAAAACTAAACTAGTCGGTTTAATCAATCATGCCA
GCGAACTGGAACATAAGGGCGGCGGGTCTTCGCTAAAATACGCCCGCTTC
TTTCCACGCTcccttttcccgcgtgatattGTTCCGGGCCAACTGTGTGC
TGGTCTAAATGATACCTCTTCAACATTGATTTCATTCGTATGCAAGCAGC
CATTTTTCATACAAATCAtagattgaaaaaagataaaccatttcgaaaat
gatgaaaatctaTTTCGGCAAATTATCATTTGTATGAAAAATGGCTATTG
GTTATAAGGTTTACTGGACAGACTAGTTTGTTTTTagctagacgatgtta
tcgtccgtttaaaggtcagtaaacgcgggaaaaatTTTGGGCGTCAGggt
ggtttacgggaaaaaagtggcggtagagttttggaacaaaacacactgta
aacatctccaccacagcttactccacccgaagtTATCAcgcgcctctcct
aaactattccgtTTTTTAGTGGCCTTGTGTAGACGATCTTTAGCCTTTCA
ATCCTTCTTCAATATGCTCTGCCTTTTAAAGAGGTTAGCTTTGAAAATGC
CAAGAAtgataacttaaattttggtgtttttttttagagAGTTGAGGTGG
AACAAATTCCAATGATCAAATTAGTCAAAGCATCTAAAATTCAAAGAAAC
AATAACTTGGGTTTCAGTTACTCTAACTGTGgtaagaaaatgttgatttt
tataaaagaaaaatcctTCAATTCTTGAGTGCTTCAACTGTTTAAGCAAC
CCAAGCAAAACCACCATAAAAAATTGCTTACCTCTTTGAGGAGGGGGGGC
TCTCACCCCCAAACAGGACAACTATGATAAATACACCCCTTCTctcagac
ccactgggaacccttcccattaaaaaaattgaccgaaatatcgtcccggt
ggaaaattatactctaatttttgttccCAATGAAAAATagtcagataagc
aaatcctcactgtaaaattttgtgctattttttccatccacTGAATTTTA
tggcttgaaaacaatggatttCAAATTCCCAGCTATGAAAAAACATACGA
CAGGAcatcaatccccatcgatttttagcccgttatttttacccccattg
GCTCAAAagatcccaccgggtctgtgagaagggggtgtataaatGTGAGC
AAGGTGGTTGGTTCGATCCTCGGCCGGGTCGACGTATTTAGTACAAAAAA
AGGTACTTGATGCCTTTCtgtttgatgctcagcaattaaaggaaggatca
agggtaagtggagcaatccaggatAATGATCGACGTCCTCATTTCCTCTG
GGTAGACAGCTAAAGGAAGCCTTCAGGTCATCCTTGACTGCGATCGAAac
ttacagttgacgctctttaattcgttcttcaaggggaattggattttcat
caaataagggagcgtattgaatagtagagcgtagtttatgagagtttctt
gttgacgttGACTTTAAATGTTATCAAATAAAGGAGCATATCAAATACAA
GAACgtagtttatgagagtttcttgttgacggggactttaaatgtTATCA
AATAATGGAGCATATCAAATACAAGAACgtagtttatgagagtttcttgt
tgacggggacttaaaatttcatcgaatcagagagcttatcgaatagtaga
acgtcgaattagaaagcgtcaaATTAGAAGCGCCATCTGTATTTATTTAT
CTACTTACTTTACTAATTTTGTACAGTGATGCTAAAAACCANTTTATTTA
TCTACTTACTTTACTGATTTTCTACAGTGATGctaaaaaccattttttat
CATCGTTTCAGCTGAAGGCTCTGACTTGAACATCAAATCATTGAGCATTT
CTCCAGATCCAATCACCATCCCAGGAAACGTAACCATCGGGTTAGATGCT
GCGATCAGTACCGAGATCACCGACATTACATCTGCCGCTCTTGTTCTTAA
ACGCAAAATCTTTGGTGTCTTTGTTGAAATTCCATGCGTTGATAATCTTG
GATCATGGTATGAAAACTTCATTTCCAAAGTTATATAGACCTATGAAGCA
TAGACGCACTGAACTTTATATACCCCGGACAAAGAtatgccatctttgat
cggagtttttttggaagTGCCAAAGAAATTATTGTAGTAACATCGTAGTA
AACCATTAAAAATCTTTGCCTGACGAAAAACGGTGCTACGTCGcttttct
atccccactggattttctggcttgaaaacaatggaattcaaatccccagc
cataaaaaacatggaaatatcaatccctatCGAGTTTCAGCCCtttattt
ctatccccactgactAAAAAaacctaccgggtctgtgagaagggggtgta
tataCTTCCACTATCCATCACTCGACTACGGCTACTCAACGAtggtctac
ccttatggaattccactgcatttcaaaccttacccctttggaacggaaat
ggacctcctcaacagggggtgcacgatttttttctggaaaagcccatttt
tagtcgaccctaattttagtcaccaagacaaaatttagtcacttagggct
gACTAATAATTAATAAGACCGACTAAAAACttgggccatttctaaattta
caagcagatggaaaataggaaaaagcttaaaatatatactggaaaataag
gaaagcttaattataaacttttaatttggcctaAATTTTTAGTTgacctt
aattttagtcggcccaaatttttagtcggccctaagtgacttagggccga
ctaagttttggccgataacgTAACCTGTTTCAAGCGAGTCGAGAAGCGAT
TGAAAAGCTCGCATGTTCTAGTTCTACCATAATGATCAAGGTggagtgtt
ttttttattaagcAATGACAATATACCCCTCAAAAACATAAAGATAGGAG
TAACTCTTTATCGGACGGGGGATTTATACACGATATGAATCCCCTATATC
GAAACACATCAGAGGGGATTTGTGTAGCCTATTACCACCGCCATCCTTGG
TAGAAAATCTTTACAAGAGCTTAccaagatcttatcaagaaacttttaCA
GAACTTTGCAAGATTCTTGTCAAGATCTTGTTAATTAATTTAAAGATTCT
TGCAGATATTTCATCATAAAGATTCCATTCATAAATGTTTTTCACCTTTT
ATAGCACTTACAACGATGTCTGTTCTTTATTGGCTAAAATCGAATGTCCC
CAACAATTGATAGACATGGGGTTCAAATGCCATTGTCCATTCCCTGCAAA
AGAGTTCAACGTACCTGCTGGAACTGTTATTGCATTACCAAAGCTTCCAT
TACCATCATTTGCCGAAAATGTAAGTTGTAAAGACCGGTCTCCATTTTCA
CGCGAAATGgacgacagtttttttcttaatcttttttgcctgaagaaaag
attacgtcatgaaatttcacgtgaacaaaaaaaaaagttgaaggaagttc
tacttttttcatccgatacgtcaatttcgaccaatggaatttgcttcatt
tttcaaccgaccaatgaccttacaaaaacgtcaaaaagttttcgctcatg
tcgcgcgaaagtggacacCGATTTTCatagtcgaaatggatcatgggtaa
tcaggattgattgcgcctccataacgGCTTCCCTTCGGCttgacgcaaaa
atcttcaaaactttttaaaactttggaccaatagtataTCGTCATTAGCG
CGTGGTGGTTCTGAtcacccattacgctttgcaactgtgaaatggcctat
gcaAGGGAGTTTCATATATTACGTCACAAGGGATCTTTAGCttgtttcca
aaatattttgttggTGATTTTAGTGATTTATTTCCTGAAATGTTTAAAAG
AAGTATACTCTATTCATAGAAGTAACATTTAACCCTGGTAATATTTCCAA
AACGTTGCAGTCGTCACACTTACAATAATGAAAAAAGCCTGTGCGATTTG
AGAGACTTTGGGAGAACCCTtctaaaaaatcacaaatatttTCCAAGAGG
ATTGAGGAACTTCTTTGAGTAATCACAttttttgactgcattgatataat
tttgcaatgCCTGTATTTGTATCTGTTCGATGGAGAATTACTATTAAGCT
ATTATGGACCCATAAACTTTGTAAAAGCTTAGCATCGCTTAAAAGCCCTG
TCTATTTGCAAGAATTTAACCCTTTGGCAGCGCACCACTTTTGAGAAAAG
CCAAAATTTGAAGcaattcttttcaaaataaattaacTTTCAAATGGCGC
ACCTTGCTTGAACTTGAGAGTTATACAAAGATTTTAGTaccatttgaaag
ctcttttcatATTCTTTCTAAAAGCATTTGGTTTATACCCCTTAAGATGA
AGTAATCAGGAGATGTGGCCGAAAGGTAAAATCGACTTTTCAGACCTTAA
ATCTACGGTTTTCGCCGTCTAAGGGTTAAATTGACTGTGGGTTTTTGGTA
AAATAACTGTCACAGATTTTACGGGATGAGTTTTTAGTTTCTATTTATCT
CTGCTGATTTCATTCCTTACCAGGGCGATTATGAAATTAAAGTGACATTA
AGTAACTTTTTAGTGTCGTTTTCAAAGTAAAGGATGAAATTTCACTTTAA
TATTCCCACATTAACAAGCTCTAGGGATGAGATTTTAGATTCcatcgggt
ctgtgacacgggttCGTATCTTAAAAAACTTAAATGGTGTTAAATggtga
agtgaatacagtcgctctcatgttgtcttctgaccagccaccagaaccgt
tgaaAAACCAACGGTCCGGCGAGACTCAAATTCAGAACCATGTCATTTTC
ATAGTAATACATAAGGGTAAAATGGTTATGTTAAATgaatattttcattg
attttattttttactagGGCGATTACGAAGCTAAAGTGACACTAAGTAAT
GGATCAACCGTTTTGGCTTGTTATGATTTCAAAGTTTCCTTGAAAGCGAA
TAGCCAAGATGAACAATACCATAACGACGTTGAAATTACCGTTTAAAGAT
CCGATTCGTTTCAAAATGTTGTCGTAAAGGGCTATATACACTACACAatt
atattgtcaggcaatatattgacgatatattgctgaataccggcaatata
ttgaaaaaatgtTCGCAATACATTGTCAATTCGATTCGCAATATTCTCGA
ATATTGCAACAATAAAGGGGATTGTTtatgtttacagaaagaaaattcct
ttttataatggTACACatgttgtttacttcgtacattacggtccgcaaac
catattgttgaatattgttcgtcaatatattgtgtagtctaagtagctcT
TAAGGGCTGATAGATATCttgt

Coding sequence (CDS) from alignment at sc0000175:224009..230130+

>TCONS_00013955 ID=TCONS_00013955|Name=TCONS_00013955|organism=Clytia hemisphaerica|type=CDS|length=3210bp|location=Sequence derived from alignment at sc0000175:224009..230130+ (Clytia hemisphaerica)
atgaagattgcTTTTGTTTTGGCAGCCCTGGTGGCTGTTTGCTTTGCTGC
ACCACAAagAGTTGAGGTGGAACAAATTCCAATGATCAAATTAGTCAAAG
CATCTAAAATTCAAAGAAACAATAACTTGGGTTTCAGTTACTCTAACTGT
GCTGAAGGCTCTGACTTGAACATCAAATCATTGAGCATTTCTCCAGATCC
AATCACCATCCCAGGAAACGTAACCATCGGGTTAGATGCTGCGATCAGTA
CCGAGATCACCGACATTACATCTGCCGCTCTTGTTCTTAAACGCAAAATC
TTTGGTGTCTTTGTTGAAATTCCATGCGTTGATAATCTTGGATCATGCAC
TTACAACGATGTCTGTTCTTTATTGGCTAAAATCGAATGTCCCCAACAAT
TGATAGACATGGGGTTCAAATGCCATTGTCCATTCCCTGCAAAAGAGTTC
AACGTACCTGCTGGAACTGTTATTGCATTACCAAAGCTTCCATTACCATC
ATTTGCCGAAAATGGCGATTACGAAGCTAAAGTGACACTAAGTAATGGAT
CAACCGTTTTGGCTTGTTATGATTTCAAAGTTTCCTTGAAAGCGAATAGC
CAAGATGAACAATACCATAACGACGTTGAAATTACCGTTTAAatgaagat
tgcTTTTGTTTTGGCAGCCCTGGTGGCTGTTTGCTTTGCTGCACCACAAa
gAGTTGAGGTGGAACAAATTCCAATGATCAAATTAGTCAAAGCATCTAAA
ATTCAAAGAAACAATAACTTGGGTTTCAGTTACTCTAACTGTGCTGAAGG
CTCTGACTTGAACATCAAATCATTGAGCATTTCTCCAGATCCAATCACCA
TCCCAGGAAACGTAACCATCGGGTTAGATGCTGCGATCAGTACCGAGATC
ACCGACATTACATCTGCCGCTCTTGTTCTTAAACGCAAAATCTTTGGTGT
CTTTGTTGAAATTCCATGCGTTGATAATCTTGGATCATGCACTTACAACG
ATGTCTGTTCTTTATTGGCTAAAATCGAATGTCCCCAACAATTGATAGAC
ATGGGGTTCAAATGCCATTGTCCATTCCCTGCAAAAGAGTTCAACGTACC
TGCTGGAACTGTTATTGCATTACCAAAGCTTCCATTACCATCATTTGCCG
AAAATGGCGATTACGAAGCTAAAGTGACACTAAGTAATGGATCAACCGTT
TTGGCTTGTTATGATTTCAAAGTTTCCTTGAAAGCGAATAGCCAAGATGA
ACAATACCATAACGACGTTGAAATTACCGTTTAAatgaagattgcTTTTG
TTTTGGCAGCCCTGGTGGCTGTTTGCTTTGCTGCACCACAAagAGTTGAG
GTGGAACAAATTCCAATGATCAAATTAGTCAAAGCATCTAAAATTCAAAG
AAACAATAACTTGGGTTTCAGTTACTCTAACTGTGCTGAAGGCTCTGACT
TGAACATCAAATCATTGAGCATTTCTCCAGATCCAATCACCATCCCAGGA
AACGTAACCATCGGGTTAGATGCTGCGATCAGTACCGAGATCACCGACAT
TACATCTGCCGCTCTTGTTCTTAAACGCAAAATCTTTGGTGTCTTTGTTG
AAATTCCATGCGTTGATAATCTTGGATCATGCACTTACAACGATGTCTGT
TCTTTATTGGCTAAAATCGAATGTCCCCAACAATTGATAGACATGGGGTT
CAAATGCCATTGTCCATTCCCTGCAAAAGAGTTCAACGTACCTGCTGGAA
CTGTTATTGCATTACCAAAGCTTCCATTACCATCATTTGCCGAAAATGGC
GATTACGAAGCTAAAGTGACACTAAGTAATGGATCAACCGTTTTGGCTTG
TTATGATTTCAAAGTTTCCTTGAAAGCGAATAGCCAAGATGAACAATACC
ATAACGACGTTGAAATTACCGTTTAAatgaagattgcTTTTGTTTTGGCA
GCCCTGGTGGCTGTTTGCTTTGCTGCACCACAAagAGTTGAGGTGGAACA
AATTCCAATGATCAAATTAGTCAAAGCATCTAAAATTCAAAGAAACAATA
ACTTGGGTTTCAGTTACTCTAACTGTGCTGAAGGCTCTGACTTGAACATC
AAATCATTGAGCATTTCTCCAGATCCAATCACCATCCCAGGAAACGTAAC
CATCGGGTTAGATGCTGCGATCAGTACCGAGATCACCGACATTACATCTG
CCGCTCTTGTTCTTAAACGCAAAATCTTTGGTGTCTTTGTTGAAATTCCA
TGCGTTGATAATCTTGGATCATGCACTTACAACGATGTCTGTTCTTTATT
GGCTAAAATCGAATGTCCCCAACAATTGATAGACATGGGGTTCAAATGCC
ATTGTCCATTCCCTGCAAAAGAGTTCAACGTACCTGCTGGAACTGTTATT
GCATTACCAAAGCTTCCATTACCATCATTTGCCGAAAATGGCGATTACGA
AGCTAAAGTGACACTAAGTAATGGATCAACCGTTTTGGCTTGTTATGATT
TCAAAGTTTCCTTGAAAGCGAATAGCCAAGATGAACAATACCATAACGAC
GTTGAAATTACCGTTTAAatgaagattgcTTTTGTTTTGGCAGCCCTGGT
GGCTGTTTGCTTTGCTGCACCACAAagAGTTGAGGTGGAACAAATTCCAA
TGATCAAATTAGTCAAAGCATCTAAAATTCAAAGAAACAATAACTTGGGT
TTCAGTTACTCTAACTGTGCTGAAGGCTCTGACTTGAACATCAAATCATT
GAGCATTTCTCCAGATCCAATCACCATCCCAGGAAACGTAACCATCGGGT
TAGATGCTGCGATCAGTACCGAGATCACCGACATTACATCTGCCGCTCTT
GTTCTTAAACGCAAAATCTTTGGTGTCTTTGTTGAAATTCCATGCGTTGA
TAATCTTGGATCATGCACTTACAACGATGTCTGTTCTTTATTGGCTAAAA
TCGAATGTCCCCAACAATTGATAGACATGGGGTTCAAATGCCATTGTCCA
TTCCCTGCAAAAGAGTTCAACGTACCTGCTGGAACTGTTATTGCATTACC
AAAGCTTCCATTACCATCATTTGCCGAAAATGGCGATTACGAAGCTAAAG
TGACACTAAGTAATGGATCAACCGTTTTGGCTTGTTATGATTTCAAAGTT
TCCTTGAAAGCGAATAGCCAAGATGAACAATACCATAACGACGTTGAAAT
TACCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007807XLOC_007807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013955-exon-sc0000175-1491911889:224009..224417TCONS_00013955-exon-sc0000175-1491911889:224009..224417Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1510915933:224009..224417TCONS_00013955-exon-sc0000175-1510915933:224009..224417Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1575043694:224009..224417TCONS_00013955-exon-sc0000175-1575043694:224009..224417Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1491911889:225396..225489TCONS_00013955-exon-sc0000175-1491911889:225396..225489Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1510915933:225396..225489TCONS_00013955-exon-sc0000175-1510915933:225396..225489Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1575043694:225396..225489TCONS_00013955-exon-sc0000175-1575043694:225396..225489Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1491911889:226620..226815TCONS_00013955-exon-sc0000175-1491911889:226620..226815Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1510915933:226620..226815TCONS_00013955-exon-sc0000175-1510915933:226620..226815Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1575043694:226620..226815TCONS_00013955-exon-sc0000175-1575043694:226620..226815Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1491911889:227963..228128TCONS_00013955-exon-sc0000175-1491911889:227963..228128Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1510915933:227963..228128TCONS_00013955-exon-sc0000175-1510915933:227963..228128Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1575043694:227963..228128TCONS_00013955-exon-sc0000175-1575043694:227963..228128Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1491911889:229676..230130TCONS_00013955-exon-sc0000175-1491911889:229676..230130Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1510915933:229676..230130TCONS_00013955-exon-sc0000175-1510915933:229676..230130Clytia hemisphaericaexon
TCONS_00013955-exon-sc0000175-1575043694:229676..230130TCONS_00013955-exon-sc0000175-1575043694:229676..230130Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013955-proteinTCONS_00013955-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:224009..230130 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
99.0886	111.979	13.8122	7.135	3.70347	3.84533	43.0258	47.8135	143.401	119.661	103.65	63.9721	58.8285	54.3373	206.458	284.765	145.05	107.325	201.909	190.894	123.376	116.291	161.27	151.458	103.713	112.527	125.782	105.22	1056.57	722.475
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR028996GM2-AP
Vocabulary: Biological Process
TermDefinition
GO:0006689ganglioside catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008047enzyme activator activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006689 ganglioside catabolic process
molecular_function GO:0008047 enzyme activator activity
Blast
[Close]
BLAST of TCONS_00013955 vs. Swiss-Prot (Human)
Match: SAP3 (Ganglioside GM2 activator OS=Homo sapiens GN=GM2A PE=1 SV=4)

HSP 1 Score: 116.701 bits (291), Expect = 3.614e-30
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 2 
Query:  485 FSYSNCAEGSDLN-IKSLSISPDPITIPGNVTIGLDAAISTEITDITSAALVLKRKIFGVFVEIPCVDNLGSCTYNDVCSLLAKI-----ECPQQLIDMGFKCHCPFPAKEFNVPAGTVIALPKLPLPSFAENGDYEAKVTLSNGSTVLACYDFKVSLKA 946
            FS+ NC EG D   I+SL++ PDPI +PGNVT+ +  + S  ++      LVL++++ G++++IPC D +GSCT+   C +L  +      CP+ L   G  CHCPF    +++P    + +P L LPS+   G+Y  +  LS+    L C     SLK 
Sbjct:   34 FSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFV-VPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKG 192
The following BLAST results are available for this feature:
BLAST of TCONS_00013955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAP33.614e-3036.25Ganglioside GM2 activator OS=Homo sapiens GN=GM2A ... [more]
back to top