TCONS_00013955-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013955-protein
Unique NameTCONS_00013955-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013955-protein ID=TCONS_00013955-protein|Name=TCONS_00013955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MKIAFVLAALVAVCFAAPQRVEVEQIPMIKLVKASKIQRNNNLGFSYSNC
AEGSDLNIKSLSISPDPITIPGNVTIGLDAAISTEITDITSAALVLKRKI
FGVFVEIPCVDNLGSCTYNDVCSLLAKIECPQQLIDMGFKCHCPFPAKEF
NVPAGTVIALPKLPLPSFAENGDYEAKVTLSNGSTVLACYDFKVSLKANS
QDEQYHNDVEITV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007807XLOC_007807Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013955TCONS_00013955Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR028996GM2-AP
Vocabulary: Biological Process
TermDefinition
GO:0006689ganglioside catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008047enzyme activator activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006689 ganglioside catabolic process
molecular_function GO:0008047 enzyme activator activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003172MD-2-related lipid-recognition domainSMARTSM00737pgtp_13coord: 47..194
e-value: 9.6E-9
score: 45.1
IPR003172MD-2-related lipid-recognition domainPFAMPF02221E1_DerP2_DerF2coord: 45..196
e-value: 1.4E-19
score: 70.7
NoneNo IPR availableGENE3D2.70.220.10coord: 43..199
e-value: 1.4E-39
score: 135.1
IPR028996Ganglioside GM2 activatorSUPERFAMILY63707Ganglioside M2 (gm2) activatorcoord: 44..197

Blast
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BLAST of TCONS_00013955-protein vs. Swiss-Prot (Human)
Match: SAP3 (Ganglioside GM2 activator OS=Homo sapiens GN=GM2A PE=1 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 6.954e-33
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 0 
Query:   45 FSYSNCAEGSDLN-IKSLSISPDPITIPGNVTIGLDAAISTEITDITSAALVLKRKIFGVFVEIPCVDNLGSCTYNDVCSLLAKI-----ECPQQLIDMGFKCHCPFPAKEFNVPAGTVIALPKLPLPSFAENGDYEAKVTLSNGSTVLACYDFKVSLKA 198
            FS+ NC EG D   I+SL++ PDPI +PGNVT+ +  + S  ++      LVL++++ G++++IPC D +GSCT+   C +L  +      CP+ L   G  CHCPF    +++P    + +P L LPS+   G+Y  +  LS+    L C     SLK 
Sbjct:   34 FSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFV-VPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKG 192
The following BLAST results are available for this feature:
BLAST of TCONS_00013955-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAP36.954e-3336.25Ganglioside GM2 activator OS=Homo sapiens GN=GM2A ... [more]
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