TCONS_00013948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013948
Unique NameTCONS_00013948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013948 ID=TCONS_00013948|Name=TCONS_00013948|organism=Clytia hemisphaerica|type=transcript|length=213bp
TCTCGGTGTAAGTCACAGCATCACGGAtgacattttccaagaaaactttC
AAGACACCACGGGTCTCTTCGTAGATCAAACCAGAGATACGTTTGACACC
ACCTCGACGAGCAAGACGACGGATGGCTGGTTTGGTGATACCTTGGATGT
TGTCACGTAAGATCTTTCTGTGACGTTTGGCACCTCCTTTGCCCGATCCT
TTTCCTCCTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000174:626177..626389

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013948 ID=TCONS_00013948|Name=TCONS_00013948|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0000174:626177..626389 (Clytia hemisphaerica)
GAAAAGGAGGAAAAGGATCGGGCAAAGGAGGTGCCAAACGTCACAGAAAG
ATCTTACGTGACAACATCCAAGGTATCACCAAACCAGCCATCCGTCGTCT
TGCTCGTCGAGGTGGTGTCAAACGTATCTCTGGTTTGATCTACGAAGAGA
CCCGTGGTGTCTTGaaagttttcttggaaaatgtcaTCCGTGATGCTGTG
ACTTACACCGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007802XLOC_007802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013948-exon-sc0000174-1491911889:626177..626389TCONS_00013948-exon-sc0000174-1491911889:626177..626389Clytia hemisphaericaexon
TCONS_00013948-exon-sc0000174-1510915933:626177..626389TCONS_00013948-exon-sc0000174-1510915933:626177..626389Clytia hemisphaericaexon
TCONS_00013948-exon-sc0000174-1575043694:626177..626389TCONS_00013948-exon-sc0000174-1575043694:626177..626389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:626177..626389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.52593	3.71534	11.7436	0	0	10.4473	4.31357	2.79124	2.75227	0.916149	0	0	0	0	1.05992	0	0	0	0	0	0	1.47899	2.63992	0	0	0	0
Blast
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BLAST of TCONS_00013948 vs. Swiss-Prot (Human)
Match: H4 (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.818e-34
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = -3 
Query:    2 RHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 175
            RHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE
Sbjct:   18 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75
The following BLAST results are available for this feature:
BLAST of TCONS_00013948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H42.818e-3498.28Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2[more]
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