TCONS_00013943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013943
Unique NameTCONS_00013943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013943 ID=TCONS_00013943|Name=TCONS_00013943|organism=Clytia hemisphaerica|type=transcript|length=626bp
tctcaatcgaatggaatcgacgatcgaactagtcgaacaacaatcaaacc
aatcgaatattacccagaatttttacgttcgattgagattcgattgcgta
cgttgttgtcgagaacgagaattaggagacaagttttataaaaatcactt
gtGATTTGGTTTATTACAAGACATTTCACTAAGCTGAAACCCTCAACTTT
CAGATGGTGTAAAgcgcttaaatgaaaaaatccacaATCTTGTTAATATG
TAAATCACAATTTCTTCTAAGATTTTCGTTGTATTCTCGGGATCCTTCAG
ATTTCTTTGATTCCATGGAAAATCAGGTTACATGCTGTGGATCGTTGTTT
GCCGACTGTTTCACATCgagttattttctccattttattGGATTTTTGAT
TCATCTGTTTGGATACAGCTTCAGCATAACTAACCTCTTTCCAGGGTTGT
CCTCTTTCGCCTCTTGCTTCTTTTCGATTAAGATGTTCTCGATCTTTGTT
TCTATCTTCTTCTCGAGTATGCTCATCTTTGTTTCCaggctttctttgat
ttcttttgcaaGAAAGTTCACATCCATTTGATTTCAGTTgggaaatttct
tcattttgtactttcatgatgttttc
Run BLAST on NCBI

protein sequence of TCONS_00013943-protein

>TCONS_00013943-protein ID=TCONS_00013943-protein|Name=TCONS_00013943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
ENIMKVQNEEISQLKSNGCELSCKRNQRKPGNKDEHTREEDRNKDREHLN
RKEARGERGQPWKEVSYAEAVSKQMNQKSNKMEKITRCETVGKQRSTACN
LIFHGIKEI
Run BLAST on NCBI

transcript from alignment at sc0000174:525398..526023

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013943 ID=TCONS_00013943|Name=TCONS_00013943|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0000174:525398..526023 (Clytia hemisphaerica)
gaaaacatcatgaaagtacaaaatgaagaaatttcccAACTGAAATCAAA
TGGATGTGAACTTTCttgcaaaagaaatcaaagaaagcctGGAAACAAAG
ATGAGCATACTCGAGAAGAAGATAGAAACAAAGATCGAGAACATCTTAAT
CGAAAAGAAGCAAGAGGCGAAAGAGGACAACCCTGGAAAGAGGTTAGTTA
TGCTGAAGCTGTATCCAAACAGATGAATCAAAAATCCaataaaatggaga
aaataactcGATGTGAAACAGTCGGCAAACAACGATCCACAGCATGTAAC
CTGATTTTCCATGGAATCAAAGAAATCTGAAGGATCCCGAGAATACAACG
AAAATCTTAGAAGAAATTGTGATTTACATATTAACAAGATtgtggatttt
ttcatttaagcgcTTTACACCATCTGAAAGTTGAGGGTTTCAGCTTAGTG
AAATGTCTTGTAATAAACCAAATCacaagtgatttttataaaacttgtct
cctaattctcgttctcgacaacaacgtacgcaatcgaatctcaatcgaac
gtaaaaattctgggtaatattcgattggtttgattgttgttcgactagtt
cgatcgtcgattccattcgattgaga

Coding sequence (CDS) from alignment at sc0000174:525398..526023

>TCONS_00013943 ID=TCONS_00013943|Name=TCONS_00013943|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000174:525398..526023 (Clytia hemisphaerica)
gaaaacatcatgaaagtacaaaatgaagaaatttcccAACTGAAATCAAA
TGGATGTGAACTTTCttgcaaaagaaatcaaagaaagcctGGAAACAAAG
ATGAGCATACTCGAGAAGAAGATAGAAACAAAGATCGAGAACATCTTAAT
CGAAAAGAAGCAAGAGGCGAAAGAGGACAACCCTGGAAAGAGGTTAGTTA
TGCTGAAGCTGTATCCAAACAGATGAATCAAAAATCCaataaaatggaga
aaataactcGATGTGAAACAGTCGGCAAACAACGATCCACAGCATGTAAC
CTGATTTTCCATGGAATCAAAGAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007797XLOC_007797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013943-exon-sc0000174-1491911889:525398..526023TCONS_00013943-exon-sc0000174-1491911889:525398..526023Clytia hemisphaericaexon
TCONS_00013943-exon-sc0000174-1510915933:525398..526023TCONS_00013943-exon-sc0000174-1510915933:525398..526023Clytia hemisphaericaexon
TCONS_00013943-exon-sc0000174-1575043694:525398..526023TCONS_00013943-exon-sc0000174-1575043694:525398..526023Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013943-proteinTCONS_00013943-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:525398..526023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682714	0.402155	0.934273	0.977281	1.60626	0.383136	1.09382	0.51201	0.645246	0.444023	1.16505	0.521754	1.15731	0.940193	0.403753	0.483841	0.191604	0.411795	0.124537	0.757114	0.509341	0.258403	0.390197	0.26606	0.861436	1.22285	0.699957	0.498009	0.199959	0.71126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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