TCONS_00013908 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013908
Unique Name	TCONS_00013908
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2410

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000174:690753..695860-
coding sequence from alignment at sc0000174:690753..695860-

transcript sequence

>TCONS_00013908 ID=TCONS_00013908|Name=TCONS_00013908|organism=Clytia hemisphaerica|type=transcript|length=2410bp
TATAACCAGTGGCTTTCGAAAATTCTCACCAGGTGACCGGAGTTCTTAAA
GGGTTTTAAAAGAAGCACTGGTCGATGGACAATTCTTTCCATTACAGTGT
GAAGAAGTCAATAAAGCAGGCTGTGAGCTTGTAACAGAAGTGGCTAAAGA
GTTTGGTTGTTACGTTGGATTTAATGTGTCGACAACTGCTGCTTATGAGA
TGGAAATGGGAAAGAAAAAAGTCCAAGAGGAATTCGAAAGGCAACTGAAA
GCGTTTGATGGATTCGAGTGCGATATATTGATCGCTGAGTACATCAGTAG
CGTGGAAGAAGCCGTTTGGGCAGTCGAAGTATTGAAACAAAGGAATCTTC
CAATTGCAGTCACATTGAGTATCAGTCATCTTGGAGATTTTAACGATGTC
ACGCCAGAAGAATGTGGGAAAAGACTTAAAGAAGCTGGTGCAGACATCAT
TGGAACGAATTGTCGATTCGCACCAATTGACACATTAGATGCTGCCATTA
TGATGAAAAATGGTATCCAAGAAACGGGGATGTCATCACATTATGTTTGT
CAACCAAATGGATGGGAATTAGAATGCAAAAATAAACATGGCCATTCAGA
AGAACCAGAATGCCCTTATGCGATGGAAAGCAAAACAATCACCAGATGGG
ATGCACAAGAATTCGCAAGGAGAGCATATGAAGCTGGTATCAGATACATT
GGTGGTTGCTGTGGTATGGAACCTTATCATATAAGGGCAATCGCTGAAGA
GCTTCGTGAAGAGAGAGGAAGATTACCATTGAACAGTCGTGGTGTAAATG
GAAGTGCGTTAAGAGACCATCCACTCGAAAGTATGAGAAAAAAggcaaat
aaagaattttggATGAACCTGAAGAAAAGAAGATGAAACAAAATAATCAA
TTAAAGCAAAAGAAGTAGATTAAAAGTAGTCCctcaaaagaatttaaata
acAATCttaaattgtaaatattttgaataggCCTTTTCTATAAATCAGTT
TTGAGTGCAACTGCCTcgttttgcaaatgttacttctATCCTTTTATAAA
TAGAGTAAAATTTTTATGAACTCATTTGGAGATTAATTACCATAGCAAGA
TATCTTGAAAACGAGGTGAGCGTTGTTCGTCGTGAAGTACTGTAATTTGA
GTATCGaaatatttgatttatttttcatattataatttttgtttccttaa
ggcgagaccaatttaatttgttgttctacggacagatcgttagaaaaata
tgggtcggtcggtcggcaaaataagaataaatttttcatttatcagggtt
ggtaaggtaccgagaagatttttcaaaaagtatctggatcaaaaattcac
tttgttttttatcttagaTGAAGATCagaataaaattttagtgtatggaa
tgctttttatgattttttaatttcttgaattaatttttagctttattcaa
gtttaactcttacaaataactagtgtgtaaaatatattatagtggaaatt
cgatattattattttttttgattttagcaaaaatagggtcggtcgggccc
gtagaacaacaaattaaatcaGTCTCGCCTAATGAAGAAAATAGCAAAAC
CTGCTTAGGTTGTTTCAAATATTCTCTTGATTTCAAAGTAGATTTCATAA
TGATTTTCgtttttactttgtttttccatacacgttttttataagaacaa
actatataagaacataagggcgaaaatttaaagagcaagttaagaatatt
ttaaggctttgcagactctaaaatggccaatttcttaagaaaatgaacaa
aaatgctcacaaaatggtgaaaataagagcatcttaaaagaacattttta
ggcttgaaactcaaaaagctaagaacatagTAATGCTTCAAAAGTTTCAa
atgatcttataaaaaaacgtgtagtcctAGTTAATATTGAAACCACTTAC
TTAGTAAAAGTAGTGGTCAAAGTGGACGAGTGGGCAAAAGGACAAACATA
ATTAGAaacattttcatgttttatatataaaataccagaaaattcaacat
tctTTTCTTTTCCCCAATGAGTTTCCTGATCCAAAGTCATTGCATTGCAA
TTTGTATTTACAAAATAAAGCATTCTTAAATAATATCATCATTCAGGTGC
aaagagaaaaaaactaaaatttctaGAGATGCGAAGAGATGGTGAATTGC
ATTCAGTATAAGATATACCAAATAGATTCTTAGAAACCGTGAACCACCAA
ATGGTCTTTTTTACATATACCAACATCAACGAGAAACTGTTGTATGTTTG
CTCTTTGATCTCCACTTAATTGTATAACTTCACCGTATTGTTCATCTTCG
ACCACTGTTCCGTTACAGTTGAATTCCTGAAGAATAAACAACATTATCAT
TACATATTTT

Run BLAST on NCBI

protein sequence of TCONS_00013908-protein

>TCONS_00013908-protein ID=TCONS_00013908-protein|Name=TCONS_00013908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MEMGKKKVQEEFERQLKAFDGFECDILIAEYISSVEEAVWAVEVLKQRNL
PIAVTLSISHLGDFNDVTPEECGKRLKEAGADIIGTNCRFAPIDTLDAAI
MMKNGIQETGMSSHYVCQPNGWELECKNKHGHSEEPECPYAMESKTITRW
DAQEFARRAYEAGIRYIGGCCGMEPYHIRAIAEELREERGRLPLNSRGVN
GSALRDHPLESMRKKANKEFWMNLKKRR

Run BLAST on NCBI

transcript from alignment at sc0000174:690753..695860-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013908 ID=TCONS_00013908|Name=TCONS_00013908|organism=Clytia hemisphaerica|type=transcript|length=5108bp|location=Sequence derived from alignment at sc0000174:690753..695860- (Clytia hemisphaerica)
TATAACCAGTGGCTTTCGAAAATTCTCACCAGGTGACCGGAGTTCTTAAA
GGGTTTTAAAAGAAGCACTGGTCGATGGACAATTCTTTCCATTACAGTGT
GAAGAAGTCAATAAAGCAGGCTGTGAGCTTGTAACAGAAGTGGCTAAAGA
GTTTGGTTGTTACGTTGGATTTAATGTGTCGACAACTGCTGCTTATGAGA
TGGAAATGGGAAAGAAAAAAGTCCAAGAGGAATTCGAAAGGCAACTGAAA
GCGTTTGATGGATTCGAGTGCGATATATTGATCGCTGAGGTAAAAATATT
GCATAAAGCACCAAATTCGTACTCAGTCCCTTATTTTGCTAATTATCAAT
CATTGCGTAACAATAGAAAAGTGGTACAAATTGCTCTTAGCACAATGCTG
ATGGCATCCACTTAAGATTCAGACACAATACCCAGCTGGCACGCTCACAA
CGTTGTTTTAACATTTGTCTAACGTTCACAACGTCCATAAAATGTTAGAT
GAACGTTGAAATAACGTTGTGTGCCAACTGGGTATTGATAAAATAAAAGA
TCTAAATCATAGGATTTTACTGAACCTTTCGAAATAATACTGTAACATTT
TTATTAGCCACGATCGTACTGACATTTTGGTATATATCGATCCACCAGAG
AACTAACAAAGAGCAAATAGGGGAGGAGGGTTGGTAGACGAAGAGCAGAC
TTTGCAATAGATTTTGGGGCCAAGGCTCCATACGAAATTCAAGAAGTTTG
AGCGATATGAGTAACGATGAGAATAAAGTTGTCATTCTATCTTACACTCT
GCCTTATAGTACATCAGTAGCGTGGAAGAAGCCGTTTGGGCAGTCGAAGT
ATTGAAACAAAGGAATCTTCCAATTGCAGTCACATTGAGTATCAGTCATC
TTGGAGATTTTAACGATGTCACGCCAGAAGAATGTGGGAAAAGACTTAAA
GAAGCTGGTGAGACTTTTTAAAAATTTTTGTTGAGATCTTTTTGAGAAAT
TTAAAGCATTTTAAAAATAAGTCGGATGTCGAAGGTTACCAATCATTGGT
GAAATATTTATCTATAGACATGAAGGGAACTAATTTTTGGTAATATTCAT
CAAAACGCCATTTCTTCCAAAATGAATTTTAATTGACAAAGCGCTGCTTC
TTAAAAAACGGACATAGAGCACCACAGCCAACATCTTGCTAATAAAAGGC
CCGATCGATGACGGGTCAAAAATGCTGCCTCGCCAAAAAAATTAATTTCT
TAGAAAGTTCTTTCTGAATTTCCAAAGCCCCTTATTTTTGTCCAAAAAAA
CATCAAACAAAAATACCAATTAACCCAGCGATTCGCCAAAATTAGTTCCC
TTGAGGAATATACCCGCAAATGGAGGGTACGGTATGTACCGCTCTTAAGG
GTACCTTTTTTGGACTTCCAAAGTCCCGCTACGGGTCGGAAAAATCAGAA
AATCAAATTTTGGTCCCACTAAGGGTCGGAAAAATAGGAAAATTTCAATT
TTTTACCCATTGAAGGATCGAAATTTGGTCAAAATTTGTCCCGCTAAGGG
TCGTAAAATTCCCAAAGTTTTCCTACTTTGTTTTTTCCTTTTTAGTCCCG
GTAACGTAAGGGTCCAAAGTTCGAAAGTCGGGCAGCTCCCCCGTCAGCTC
GCAACCCTAGTATCCCCCCCCCGGGGGAATATGAAATATTTCACCAATGA
TATCTAAGCTTTTAGACACTATTACTGCAAGAATGAACGTAAAACTTTAT
ATAACAATTCATACAACAATTTCATAAAGGTTCGACCTTCAAACTGAAGA
TTACCTGAAAGTTGCCTGAAGATTGTCATAAAAGTGGCATGAAACTGCCA
GTAGCAGAACAAAAAAGTGCCTTTTCTTCCTGACTGACCCTCAAACTTTT
CATTTATTGATACAAAAGCAAAAAGTAGCATCACAAAAGACAATTCTGAT
CTGACTTTTCAGGTGCAGACATCATTGGAACGAATTGTCGATTCGCACCA
ATTGACACATTAGATGCTGCCATTATGATGAAAAATGGTATCCAAGAAAC
GGGGATGTCATCACATTATGTTTGTCAACCAAATGGATGGGAATTAGAAT
GCAAAAATAAACATGGCCATTCAGAAGAACCAGAATGCCCTTATGGTAAG
ATCATTTTATTACTGAGATTTAAAATAGAACCACACATTCAAACCCTACA
ATGACTTTGTCTAGTTCTTTTTGACAAGAATAATTCAAATATAAGTTTAG
CAGGTTGTTTTGTGACGAATTTGACTCACAAACAAAGGTTCGTGACTAAG
CTTAATTAAACTAAACTAAAACTTTAACCTTAACTAAATCCCTAAATTTT
AGTCTGGATTTAAACTTAAGTCTCACAACCCAAAACATTCCCGTATGGAT
GGAAATATAAATAGCAAGATAATAATAGTAATAGCAACACATTATGAACA
AAAAGAAATGCAAAAGGAGATAATTTTAAGTCGCTAATATTCTGCCAACT
TCTTCTTCAGCGATGGAAAGCAAAACAATCACCAGATGGGATGCACAAGA
ATTCGCAAGGAGAGCATATGAAGCTGGTATCAGATACATTGGTGGTTGCT
GTGGTATGGAACCTTATCATATAAGGGCAATCGCTGAAGAGGTAAGCAGT
AGCGTAGACAGGAGGGGCGCAAAACTTGTGTAGGAGAGCCGATTTTGATG
ACACTGTAATTATCTATTCATTATGTAAAAAGATAACTAGAGTGTAATCA
AAATCTGCTCTCCTACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGG
TAAGAGAGACAGAACTAAAACATGTGGTCTAATGCATGTTTGTCAAAATA
AGAGCATCCAGGTAACAAATCCGCGATCCTCACCATGTTTCGTTCAAAAA
TTGAAAGAGGGGCAGGTGGGTGAGAACAATAGACTGACAAAGATTAAAAT
ATTACTGGGCCACCCACCAAACATGTTTCATTGCAATGGTTAAAGATCGT
GAGAATTGAGATTATTTCTATTGTGAACACCTTTTTCTTTTCCTGCACAG
CAATGTAAACACAGCACATAAGTACTCTATCTCAACATAGACTATGATCT
CAATTGGATATACAGGGGAGTCTCTTTAACTCAAACCTCTATTACTCGAA
TGTCTCCTCAACTGGAACAAGTTATATGTATATACCTCCACATGTACTTT
CTTATTTTTAGCTTCGTGAAGAGAGAGGAAGATTACCATTGAACAGTCGT
GGTGTAAATGGAAGTGCGTTAAGAGACCATCCACTCGAAAGTATGAGAAA
AAAGTAAGTAGAAAAACTCCACAAGAAATAACTTGAAAGATCAGTACCCC
CTATGGTCAGTAAAATCGGGTTTAAAATCTAGGGTGGTCCCAAAACAATG
GCAGAAAAAAATCCAAGGATGTTCCTGAAAAATTAGAAGAAAATCCAGAC
CTCCTCAATATAAGGGGTACAAACTTTTTCTGGAATAGCCCATTTGAAGT
GAATACTTAACTACTGACTGTCTTGCTTTTTTTCAATTTAGGGCAAATAA
AGAATTTTGGATGAACCTGAAGAAAAGAAGATGAAACAAAATAATCAATT
AAAGCAAAAGAAGTAGATTAAAAGTAGTCCCTCAAAAGAATTTAAATAAC
AATCTTAAATTGTAAATATTTTGAATAGGCCTTTTCTATAAATCAGTTTT
GAGTGCAACTGCCTCGTTTTGCAAATGTTACTTCTATCCTTTTATAAATA
GAGTAAAATTTTTATGAACTCATTTGGAGATTAATTACCATAGCAAGATA
TCTTGAAAACGAGGTGAGCGTTGTTCGTCGTGAAGTACTGTAATTTGAGT
ATCGAAATATTTGATTTATTTTTCATATTATAATTTTTGTTTCCTTAAGG
CGAGACCAATTTAATTTGTTGTTCTACGGACAGATCGTTAGAAAAATATG
GGTCGGTCGGTCGGCAAAATAAGAATAAATTTTTCATTTATCAGGGTTGG
TAAGGTACCGAGAAGATTTTTCAAAAAGTATCTGGATCAAAAATTCACTT
TGTTTTTTATCTTAGATGAAGATCAGAATAAAATTTTAGTGTATGGAATG
CTTTTTATGATTTTTTAATTTCTTGAATTAATTTTTAGCTTTATTCAAGT
TTAACTCTTACAAATAACTAGTGTGTAAAATATATTATAGTGGAAATTCG
ATATTATTATTTTTTTTGATTTTAGCAAAAATAGGGTCGGTCGGGCCCGT
AGAACAACAAATTAAATCAGTCTCGCCTAATGAAGAAAATAGCAAAACCT
GCTTAGGTTGTTTCAAATATTCTCTTGATTTCAAAGTAGATTTCATAATG
ATTTTCGTTTTTACTTTGTTTTTCCATACACGTTTTTTATAAGAACAAAC
TATATAAGAACATAAGGGCGAAAATTTAAAGAGCAAGTTAAGAATATTTT
AAGGCTTTGCAGACTCTAAAATGGCCAATTTCTTAAGAAAATGAACAAAA
ATGCTCACAAAATGGTGAAAATAAGAGCATCTTAAAAGAACATTTTTAGG
CTTGAAACTCAAAAAGCTAAGAACATAGTAATGCTTCAAAAGTTTCAAAT
GATCTTATAAAAAAACGTGTAGTCCTAGTTAATATTGAAACCACTTACTT
AGTAAAAGTAGTGGTCAAAGTGGACGAGTGGGCAAAAGGACAAACATAAT
TAGAAACATTTTCATGTTTTATATATAAAATACCAGAAAATTCAACATTC
TTTTCTTTTCCCCAATGAGTTTCCTGATCCAAAGTCATTGCATTGCAATT
TGTATTTACAAAATAAAGCATTCTTAAATAATATCATCATTCAGGTGCAA
AGAGAAAAAAACTAAAATTTCTAGAGATGCGAAGAGATGGTGAATTGCAT
TCAGTATAAGATATACCAAATAGATTCTTAGAAACCGTGAACCACCAAAT
GGTCTTTTTTACATATACCAACATCAACGAGAAACTGTTGTATGTTTGCT
CTTTGATCTCCACTTAATTGTATAACTTCACCGTATTGTTCATCTTCGAC
CACTGTTCCGTTACAGTTGAATTCCTGAAGAATAAACAACATTATCATTA
CATATTTT

Coding sequence (CDS) from alignment at sc0000174:690753..695860-

>TCONS_00013908 ID=TCONS_00013908|Name=TCONS_00013908|organism=Clytia hemisphaerica|type=CDS|length=4122bp|location=Sequence derived from alignment at sc0000174:690753..695860- (Clytia hemisphaerica)
GGCAAATAAAGAATTTTGGATGAACCTGAAGAAAAGAAGATGACTTCGTG
AAGAGAGAGGAAGATTACCATTGAACAGTCGTGGTGTAAATGGAAGTGCG
TTAAGAGACCATCCACTCGAAAGTATGAGAAAAAACGATGGAAAGCAAAA
CAATCACCAGATGGGATGCACAAGAATTCGCAAGGAGAGCATATGAAGCT
GGTATCAGATACATTGGTGGTTGCTGTGGTATGGAACCTTATCATATAAG
GGCAATCGCTGAAGAGGTGCAGACATCATTGGAACGAATTGTCGATTCGC
ACCAATTGACACATTAGATGCTGCCATTATGATGAAAAATGGTATCCAAG
AAACGGGGATGTCATCACATTATGTTTGTCAACCAAATGGATGGGAATTA
GAATGCAAAAATAAACATGGCCATTCAGAAGAACCAGAATGCCCTTATGT
ACATCAGTAGCGTGGAAGAAGCCGTTTGGGCAGTCGAAGTATTGAAACAA
AGGAATCTTCCAATTGCAGTCACATTGAGTATCAGTCATCTTGGAGATTT
TAACGATGTCACGCCAGAAGAATGTGGGAAAAGACTTAAAGAAGCTGATG
GAAATGGGAAAGAAAAAAGTCCAAGAGGAATTCGAAAGGCAACTGAAAGC
GTTTGATGGATTCGAGTGCGATATATTGATCGCTGAGGGCAAATAAAGAA
TTTTGGATGAACCTGAAGAAAAGAAGATGACTTCGTGAAGAGAGAGGAAG
ATTACCATTGAACAGTCGTGGTGTAAATGGAAGTGCGTTAAGAGACCATC
CACTCGAAAGTATGAGAAAAAACGATGGAAAGCAAAACAATCACCAGATG
GGATGCACAAGAATTCGCAAGGAGAGCATATGAAGCTGGTATCAGATACA
TTGGTGGTTGCTGTGGTATGGAACCTTATCATATAAGGGCAATCGCTGAA
GAGGTGCAGACATCATTGGAACGAATTGTCGATTCGCACCAATTGACACA
TTAGATGCTGCCATTATGATGAAAAATGGTATCCAAGAAACGGGGATGTC
ATCACATTATGTTTGTCAACCAAATGGATGGGAATTAGAATGCAAAAATA
AACATGGCCATTCAGAAGAACCAGAATGCCCTTATGTACATCAGTAGCGT
GGAAGAAGCCGTTTGGGCAGTCGAAGTATTGAAACAAAGGAATCTTCCAA
TTGCAGTCACATTGAGTATCAGTCATCTTGGAGATTTTAACGATGTCACG
CCAGAAGAATGTGGGAAAAGACTTAAAGAAGCTGATGGAAATGGGAAAGA
AAAAAGTCCAAGAGGAATTCGAAAGGCAACTGAAAGCGTTTGATGGATTC
GAGTGCGATATATTGATCGCTGAGGGCAAATAAAGAATTTTGGATGAACC
TGAAGAAAAGAAGATGACTTCGTGAAGAGAGAGGAAGATTACCATTGAAC
AGTCGTGGTGTAAATGGAAGTGCGTTAAGAGACCATCCACTCGAAAGTAT
GAGAAAAAACGATGGAAAGCAAAACAATCACCAGATGGGATGCACAAGAA
TTCGCAAGGAGAGCATATGAAGCTGGTATCAGATACATTGGTGGTTGCTG
TGGTATGGAACCTTATCATATAAGGGCAATCGCTGAAGAGGTGCAGACAT
CATTGGAACGAATTGTCGATTCGCACCAATTGACACATTAGATGCTGCCA
TTATGATGAAAAATGGTATCCAAGAAACGGGGATGTCATCACATTATGTT
TGTCAACCAAATGGATGGGAATTAGAATGCAAAAATAAACATGGCCATTC
AGAAGAACCAGAATGCCCTTATGTACATCAGTAGCGTGGAAGAAGCCGTT
TGGGCAGTCGAAGTATTGAAACAAAGGAATCTTCCAATTGCAGTCACATT
GAGTATCAGTCATCTTGGAGATTTTAACGATGTCACGCCAGAAGAATGTG
GGAAAAGACTTAAAGAAGCTGATGGAAATGGGAAAGAAAAAAGTCCAAGA
GGAATTCGAAAGGCAACTGAAAGCGTTTGATGGATTCGAGTGCGATATAT
TGATCGCTGAGGGCAAATAAAGAATTTTGGATGAACCTGAAGAAAAGAAG
ATGACTTCGTGAAGAGAGAGGAAGATTACCATTGAACAGTCGTGGTGTAA
ATGGAAGTGCGTTAAGAGACCATCCACTCGAAAGTATGAGAAAAAACGAT
GGAAAGCAAAACAATCACCAGATGGGATGCACAAGAATTCGCAAGGAGAG
CATATGAAGCTGGTATCAGATACATTGGTGGTTGCTGTGGTATGGAACCT
TATCATATAAGGGCAATCGCTGAAGAGGTGCAGACATCATTGGAACGAAT
TGTCGATTCGCACCAATTGACACATTAGATGCTGCCATTATGATGAAAAA
TGGTATCCAAGAAACGGGGATGTCATCACATTATGTTTGTCAACCAAATG
GATGGGAATTAGAATGCAAAAATAAACATGGCCATTCAGAAGAACCAGAA
TGCCCTTATGTACATCAGTAGCGTGGAAGAAGCCGTTTGGGCAGTCGAAG
TATTGAAACAAAGGAATCTTCCAATTGCAGTCACATTGAGTATCAGTCAT
CTTGGAGATTTTAACGATGTCACGCCAGAAGAATGTGGGAAAAGACTTAA
AGAAGCTGATGGAAATGGGAAAGAAAAAAGTCCAAGAGGAATTCGAAAGG
CAACTGAAAGCGTTTGATGGATTCGAGTGCGATATATTGATCGCTGAGGG
CAAATAAAGAATTTTGGATGAACCTGAAGAAAAGAAGATGACTTCGTGAA
GAGAGAGGAAGATTACCATTGAACAGTCGTGGTGTAAATGGAAGTGCGTT
AAGAGACCATCCACTCGAAAGTATGAGAAAAAACGATGGAAAGCAAAACA
ATCACCAGATGGGATGCACAAGAATTCGCAAGGAGAGCATATGAAGCTGG
TATCAGATACATTGGTGGTTGCTGTGGTATGGAACCTTATCATATAAGGG
CAATCGCTGAAGAGGTGCAGACATCATTGGAACGAATTGTCGATTCGCAC
CAATTGACACATTAGATGCTGCCATTATGATGAAAAATGGTATCCAAGAA
ACGGGGATGTCATCACATTATGTTTGTCAACCAAATGGATGGGAATTAGA
ATGCAAAAATAAACATGGCCATTCAGAAGAACCAGAATGCCCTTATGTAC
ATCAGTAGCGTGGAAGAAGCCGTTTGGGCAGTCGAAGTATTGAAACAAAG
GAATCTTCCAATTGCAGTCACATTGAGTATCAGTCATCTTGGAGATTTTA
ACGATGTCACGCCAGAAGAATGTGGGAAAAGACTTAAAGAAGCTGATGGA
AATGGGAAAGAAAAAAGTCCAAGAGGAATTCGAAAGGCAACTGAAAGCGT
TTGATGGATTCGAGTGCGATATATTGATCGCTGAGGGCAAATAAAGAATT
TTGGATGAACCTGAAGAAAAGAAGATGACTTCGTGAAGAGAGAGGAAGAT
TACCATTGAACAGTCGTGGTGTAAATGGAAGTGCGTTAAGAGACCATCCA
CTCGAAAGTATGAGAAAAAACGATGGAAAGCAAAACAATCACCAGATGGG
ATGCACAAGAATTCGCAAGGAGAGCATATGAAGCTGGTATCAGATACATT
GGTGGTTGCTGTGGTATGGAACCTTATCATATAAGGGCAATCGCTGAAGA
GGTGCAGACATCATTGGAACGAATTGTCGATTCGCACCAATTGACACATT
AGATGCTGCCATTATGATGAAAAATGGTATCCAAGAAACGGGGATGTCAT
CACATTATGTTTGTCAACCAAATGGATGGGAATTAGAATGCAAAAATAAA
CATGGCCATTCAGAAGAACCAGAATGCCCTTATGTACATCAGTAGCGTGG
AAGAAGCCGTTTGGGCAGTCGAAGTATTGAAACAAAGGAATCTTCCAATT
GCAGTCACATTGAGTATCAGTCATCTTGGAGATTTTAACGATGTCACGCC
AGAAGAATGTGGGAAAAGACTTAAAGAAGCTGATGGAAATGGGAAAGAAA
AAAGTCCAAGAGGAATTCGAAAGGCAACTGAAAGCGTTTGATGGATTCGA
GTGCGATATATTGATCGCTGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007762	XLOC_007762	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00013908-protein	TCONS_00013908-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000174	supercontig	sc0000174:690753..695860 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148168	0.287958	0.432267	0.296386	3.96338	2.43369	3.99611	4.68982	5.17229	2.88777	6.37968	6.6288	13.8268	12.6698	12.1938	22.5287	12.5552	16.0403	8.43565	7.63799	15.2862	14.5066	5.96696	6.86814	3.23833	3.05254	3.8835	5.19062	12.2674	11.9547

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003726	HCY_dom
IPR017226	Betaine-hCys_S-MeTrfase_BHMT

Vocabulary: **Molecular Function**
Term	Definition
GO:0047150	betaine-homocysteine S-methyltransferase activity
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0009086	methionine biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009086	methionine biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0047150	betaine-homocysteine S-methyltransferase activity
molecular_function	GO:0008270	zinc ion binding

Blast

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BLAST of TCONS_00013908 vs. Swiss-Prot (Human)
Match: BHMT2 (S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Homo sapiens GN=BHMT2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.214e-54
Identity = 121/261 (46.36%), Postives = 163/261 (62.45%), Query Frame = 2

Query:   95 QCEEVNKAGCELVTEVAKEFGCYVGFNVSTTAAYEMEMGKKKVQEEFERQLKAFDGFECDILIAEYISSXXXXXXXXXXLKQRNLPIAVTLSISHLGDFNDVTPEECGKRLKEAGADIIGTNCRFAPIDTLDAAIMMKNGIQETGMSSHYVCQPNGWELECKNKHGHSEEPECPYAMESKTITRWDAQEFARRAYEAGIRYIGGCCGMEPYHXXXXXXXXXXXXXXXPLNS--RGVNGSALRDHPLESMRKKANKEFWMNL 871
            + E+VN A C+L  EVA +    V   +  T+ Y+ +  + ++++ F +QL+ F     D LIAEY   VEEAVWAVEVLK+ + P+AVT+ I   GD +D+TP EC  RL +AGA I+G NCRF P  +L    +MK G++  G+ +H + QP G+      K G  + PE P+ +ES+  TRWD Q++AR AY  G+RYIGGCCG EPYHIRAIAEEL  ERG LP  S   G  GS L  H    +R +A +E+W NL
Sbjct:   86 KWEDVNAAACDLAREVAGKGDALVAGGICQTSIYKYQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENL 346

The following BLAST results are available for this feature:

BLAST of TCONS_00013908 vs. Swiss-Prot (Human)

BLAST of TCONS_00013908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BHMT2	3.214e-54	46.36	S-methylmethionine--homocysteine S-methyltransfera...	[more]

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TCONS_00013908 (transcript) - C. hemisphaerica