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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013882 ID=TCONS_00013882|Name=TCONS_00013882|organism=Clytia hemisphaerica|type=transcript|length=1996bpRun BLAST on NCBI protein sequence of TCONS_00013882-protein >TCONS_00013882-protein ID=TCONS_00013882-protein|Name=TCONS_00013882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MPSKTRRAIKDLSIVDTQSKIDFPCRKTRSRTSKKVVDEDVFEKVQPIKTRun BLAST on NCBI transcript from alignment at sc0000174:257170..301237- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013882 ID=TCONS_00013882|Name=TCONS_00013882|organism=Clytia hemisphaerica|type=transcript|length=44068bp|location=Sequence derived from alignment at sc0000174:257170..301237- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:257170..301237- >TCONS_00013882 ID=TCONS_00013882|Name=TCONS_00013882|organism=Clytia hemisphaerica|type=CDS|length=15120bp|location=Sequence derived from alignment at sc0000174:257170..301237- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013882 vs. Swiss-Prot (Human)
Match: CDC6 (Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 2.207e-104 Identity = 186/394 (47.21%), Postives = 272/394 (69.04%), Query Frame = 1
Query: 463 ALHTSIPTDLIGRTEEQNLIDSFITKTMKNHQPGSLYLSGAPGTGKTACLTKALDKLECSTCKKYQSFFINCMSIKSSQNIFTKVASELSGNSKTFTA-KDALKYLETKCKSQ-GPRXXXXXXXXXXXXSKNQDVLYKLFELPFLPKSRLVLIGIANALDLTDRILPRLQSKDTCKPLLLQFSPYSKDQISEILNSRIKEIGSTEI-DPMAVQFCARKVHAITGDIRKALDILRRAVEIKESAEKKKLRSGELDK---------PQKVTLAHVASVCSEVYGXXXX-XXXXXXNAFPLQQKLVICSLMVCLRDKKLKEVTTGKLYETYSRVCKSRQMAGVTNEEMSSACNLLESQGIITIKKTKDLRNSKITLRLQENEVEHALQDKTLISSIL 1605
L+T++P L R E ++I +F+ + + + GSLYLSGAPGTGKTACL++ L L+ K +++ +NCMS++++Q +F +A E+ + A KD ++ LE ++ GP I+L+LDE+DQL+SK QDVLY LFE P+L S LVLIGIAN LDLTDRILPRLQ+++ CKP LL F PY+++QI IL R+ ++ ++ D AVQFCARKV A++GD+RKALD+ RRA+EI ES K + L + P++V L H++ V SEV G+R++ S + ++FPLQQK+++CSLM+ +R K+KEVT GKLYE YS+VC+ +Q+A V E S LLE++GI+ +K+ K+ R +K+ +++E E+EHAL+DK LI +IL
Sbjct: 163 VLNTAVPDRLPAREREMDVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLK-KELKGFKTIMLNCMSLRTAQAVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTLFEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLNQVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSPSEPLIPKRVGLIHISQVISEVDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEVTLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKEIEHALKDKALIGNIL 555 The following BLAST results are available for this feature:
BLAST of TCONS_00013882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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