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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013881 ID=TCONS_00013881|Name=TCONS_00013881|organism=Clytia hemisphaerica|type=transcript|length=1133bp
CGCATGTGTTTGATGTTTGAGTCTCATCCAGTTTACCCTTATACCTGGCT
GAATGCTAAGCTAAGTGATAGTATCGGTATGATTTATAATAGTATTTGTC
TCCTGTATTAACCAATCttaacttattttctttttttacagactagaaaa
gtagaaaaaaaagaaactatTATATAAAATAGAGGCAGCAGATGGCAAAA
ACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTACCCCTGC
ACCATCCAAGAAGTCAAGtggcaaaaagaaaatgaaaagccCTTCAAGAA
CACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATTAAATGAA
AGCGGTATCAAAAAGAGGAAATGGAAAGCTGGAACAAAGGCGTTACGTGA
AATCAGATTTTACCAAAGAACCGACCACAAATTGATTCCTAAATTATCGT
TTTGTCGATTAGTAAAAGAACTTTTATCTAATGCTGTCGGAGGTGGGTCT
GAGCAATTGAGAATTCAAACATACGCTTTGGATGCTTTACAAGAAGCTGC
TGAAAGTTTTATGGTACGTTTTTTTGAAGAATCAAACCTCTGCGCTATTC
ATGCTAAACGAGTAACACTTATGCCGAAGGATATGCAGTTATTGAAAGCG
TTGAAATATGACTGATTTATCTAGCGGCCGAATCCGCAAGAAACATCGGA
AAATCATTTTCAAGTTGTGCAGTACTTGACTTGTATTGTAAATATTAGAT
TCTAGAACTGCTTGGGTTTCCAAGGCAAGGGCGTCAATTGGAATTTACAA
TTCTGTctaattttttaattcaaatttcaaacaatttgaaATTCGTCTGG
AATTACCAGTTTTTCGAATACTACGAGTATTACATCACTAATGATTTGAT
TAATTTGATTTACTCCCGACACTCTGGAAAGTTCATTGGGTTTTTATGTA
GTTTTAGGAATGATATTCgacaagaaatttaaaaacGTTTATTTTTAATA
AGTTTTCATTAGTAGTATACCTTGTAAatagtattttaaaggtttttaaa
attttaatgaacttttttttccttttagtcTTTTAAACCAAACTGAAAAT
ATAAACTTTACTACCGGAAGgtcttttaaaaat Run BLAST on NCBI protein sequence of TCONS_00013881-protein >TCONS_00013881-protein ID=TCONS_00013881-protein|Name=TCONS_00013881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MAKTKANQLRHEPKSASTPAPSKKSSGKKKMKSPSRTPASPDKSNRSNSR
LNESGIKKRKWKAGTKALREIRFYQRTDHKLIPKLSFCRLVKELLSNAVG
GGSEQLRIQTYALDALQEAAESFMVRFFEESNLCAIHAKRVTLMPKDMQL
LKALKYD Run BLAST on NCBI transcript from alignment at sc0000174:254940..257082- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013881 ID=TCONS_00013881|Name=TCONS_00013881|organism=Clytia hemisphaerica|type=transcript|length=2143bp|location=Sequence derived from alignment at sc0000174:254940..257082- (Clytia hemisphaerica)
CGCATGTGTTTGATGTTTGAGTCTCATCCAGTTTACCCTTATACCTGGCT
GAATGCTAAGCTAAGTGATAGTATCGGTATGATTTATAATAGTATTTGTC
TCCTGTATTAACCAATCTTAACTTATTTTCTTTTTTTACAGACTAGAAAA
GTAGAAAAAAAAGAAACTATTATATAAAATAGAGGCAGCAGATGGCAAAA
ACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTACCCCTGC
ACCATCCAAGAAGTCAAGTGGCAAAAAGAAAATGAAAAGCCCTTCAAGAA
CACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATTAAATGAA
AGCGGTATCAAAAAGAGGTATTTCAACTTTGGTTTTTTAAACGATTAAAA
TTTGGTAGAAATTTGAAATCTTCATTGAAAAAAAAAACTCCCCCGCCCTT
TGTTTTGATCAAAACCAGCCCTCCCCCCGACAGTTTACATGAATGCGTGA
ATGGGCTTTTTTTACGTGCGCGAATGCCTGAAAATTTCACAAAATCTGCG
TGAATGCATGAATTGGAACTTTGCGTGATGTGCGAACCTATATTATTTTA
ATTCCCCTACCCCTTAGATTTCCAAAAATTTATAACAAGTGCTTTGACTA
AAAAAGTCAAGCGACCTTAAAAAATCGAATAAATTCCCCCGTACTATGAA
CAAAAGTTTGGAAAAATAAATTGCGTGAATTAAAGGTCAGCTTGGGGGGG
GGGTCCTCATCAGAGCTCTCGTTTATCAATTCTCATCCTTTTTCATAAAA
ATAAATATATTTGCTAATCTGAAGCTAAGGCTTTACATACATACGCCTAA
AAAAACTATTCAATGTAGCCTTTGCTTAAACCTTCAAAAAGCTACCCCTT
CGATTTTAGAACAGATTTTCAAAGAAAGCTTCTATAAATTCAGCAGCTCT
AAATATGTTTTATCTAGATTCTGAATTTAAGTCTAAATAAGTCTTGAGTA
GTACGATAAGGCCCCGTTTATAAGGCACCCAAGATCAAAAGCACCCTGAG
ATCGTGAGTTTTATTGCTAATTTATCTTTTCTTTTGTGTATTTCAGGAAA
TGGAAAGCTGGAACAAAGGCGTTACGTGAAATCAGATTTTACCAAAGAAC
CGACCACAAATTGATTCCTAAATTATCGTTTTGTCGATTAGTAAAAGAAC
TTTTATCTAATGCTGTCGGAGGTGGGTCTGAGCAATTGAGAATTCAAACA
TACGCTTTGGATGCTTTACAAGAAGCTGCTGAAAGTTTTATGGTACGTTT
TTTTGAAGAATCAAACCTCTGCGCTATTCATGCTAAACGAGTAACACTTA
TGCCGAAGGATATGCAGTTATTGAAAGCGTTGAAATATGACTGTGAGTTA
TAATTTTGTCCGATTTCATCATTATGCAAATCTTACTATACATTGAAAGC
TTTTGATTTGACACCTTGGCTTCTTCGATAGCTTAAAAATGACATTCTTC
TGTATAACGTGAGATCTAAATCTCTTTTGCCCATCTAATGATGATTTCAA
ATCAACTTCCTAACGCGATTCTACTTTTCTAACTGGGATAATGTCTAGCT
GCTATAATACTTTGCTACTCATGAATGAACCCACATTAGTCCATCATCTG
AACTAGAAAACTTGAATTTTAAGGATTTATCTAGCGGCCGAATCCGCAAG
AAACATCGGAAAATCATTTTCAAGTTGTGCAGTACTTGACTTGTATTGTA
AATATTAGATTCTAGAACTGCTTGGGTTTCCAAGGCAAGGGCGTCAATTG
GAATTTACAATTCTGTCTAATTTTTTAATTCAAATTTCAAACAATTTGAA
ATTCGTCTGGAATTACCAGTTTTTCGAATACTACGAGTATTACATCACTA
ATGATTTGATTAATTTGATTTACTCCCGACACTCTGGAAAGTTCATTGGG
TTTTTATGTAGTTTTAGGAATGATATTCGACAAGAAATTTAAAAACGTTT
ATTTTTAATAAGTTTTCATTAGTAGTATACCTTGTAAATAGTATTTTAAA
GGTTTTTAAAATTTTAATGAACTTTTTTTTCCTTTTAGTCTTTTAAACCA
AACTGAAAATATAAACTTTACTACCGGAAGGTCTTTTAAAAAT Coding sequence (CDS) from alignment at sc0000174:254940..257082- >TCONS_00013881 ID=TCONS_00013881|Name=TCONS_00013881|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000174:254940..257082- (Clytia hemisphaerica)
GAGAAATGGAAAGCTGGAACAAAGGCGTTACGTGAAATCAGATTTTACCA
AAGAACCGACCACAAATTGATTCCTAAATTATCGTTTTGTCGATTAGTAA
AAGAACTTTTATCTAATGCTGTCGGAGGTGGGTCTGAGCAATTGAGAATT
CAAACATACGCTTTGGATGCTTTACAAGAAGCTGCTGAAAGTTTTATGGT
ACGTTTTTTTGAAGAATCAAACCTCTGCGCTATTCATGCTAAACGAGTAA
CACTTATGCCGAAGGATATGCAGTTATTGAAAGCGTTGAAATATGACTAT
GGCAAAAACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTA
CCCCTGCACCATCCAAGAAGTCAAGTGGCAAAAAGAAAATGAAAAGCCCT
TCAAGAACACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATT
AAATGAAAGCGGTATCAAAAAGAGGAGAAATGGAAAGCTGGAACAAAGGC
GTTACGTGAAATCAGATTTTACCAAAGAACCGACCACAAATTGATTCCTA
AATTATCGTTTTGTCGATTAGTAAAAGAACTTTTATCTAATGCTGTCGGA
GGTGGGTCTGAGCAATTGAGAATTCAAACATACGCTTTGGATGCTTTACA
AGAAGCTGCTGAAAGTTTTATGGTACGTTTTTTTGAAGAATCAAACCTCT
GCGCTATTCATGCTAAACGAGTAACACTTATGCCGAAGGATATGCAGTTA
TTGAAAGCGTTGAAATATGACTATGGCAAAAACGAAAGCTAACCAGCTAA
GACATGAACCGAAGTCAGCATCTACCCCTGCACCATCCAAGAAGTCAAGT
GGCAAAAAGAAAATGAAAAGCCCTTCAAGAACACCTGCGAGTCCAGATAA
ATCGAACAGATCAAATTCAAGATTAAATGAAAGCGGTATCAAAAAGAGGA
GAAATGGAAAGCTGGAACAAAGGCGTTACGTGAAATCAGATTTTACCAAA
GAACCGACCACAAATTGATTCCTAAATTATCGTTTTGTCGATTAGTAAAA
GAACTTTTATCTAATGCTGTCGGAGGTGGGTCTGAGCAATTGAGAATTCA
AACATACGCTTTGGATGCTTTACAAGAAGCTGCTGAAAGTTTTATGGTAC
GTTTTTTTGAAGAATCAAACCTCTGCGCTATTCATGCTAAACGAGTAACA
CTTATGCCGAAGGATATGCAGTTATTGAAAGCGTTGAAATATGACTATGG
CAAAAACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTACC
CCTGCACCATCCAAGAAGTCAAGTGGCAAAAAGAAAATGAAAAGCCCTTC
AAGAACACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATTAA
ATGAAAGCGGTATCAAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013881-exon-sc0000174-1575043694:256716..257082 | TCONS_00013881-exon-sc0000174-1575043694:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1575043694:255691..255986 | TCONS_00013881-exon-sc0000174-1575043694:255691..255986 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1575043694:254940..255409 | TCONS_00013881-exon-sc0000174-1575043694:254940..255409 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1510915933:256716..257082 | TCONS_00013881-exon-sc0000174-1510915933:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1510915933:255691..255986 | TCONS_00013881-exon-sc0000174-1510915933:255691..255986 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1510915933:254940..255409 | TCONS_00013881-exon-sc0000174-1510915933:254940..255409 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1491911889:256716..257082 | TCONS_00013881-exon-sc0000174-1491911889:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1491911889:255691..255986 | TCONS_00013881-exon-sc0000174-1491911889:255691..255986 | Clytia hemisphaerica | exon |
| TCONS_00013881-exon-sc0000174-1491911889:254940..255409 | TCONS_00013881-exon-sc0000174-1491911889:254940..255409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:254940..257082 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000786 | nucleosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0000786 |
nucleosome |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
BLAST of TCONS_00013881 vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 4.307e-26 Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 345 NESGIKK-RKWKAGTKALREIRFYQRTDHKLIPKLSFCRLVKELLSNAVGGGSEQLRIQTYALDALQEAAESFMVRFFEESNLCAIHAKRVTLMPKDMQLLKALK 656
+ G+KK +++ GT ALREIR YQ++ LI KL F RLV+E+ + LR Q+ A+ ALQEA+E+++V FE++NLCAIHAKRVT+MPKD+QL + ++
Sbjct: 32 STGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
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