TCONS_00013881-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013881-protein
Unique NameTCONS_00013881-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013881-protein ID=TCONS_00013881-protein|Name=TCONS_00013881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MAKTKANQLRHEPKSASTPAPSKKSSGKKKMKSPSRTPASPDKSNRSNSR
LNESGIKKRKWKAGTKALREIRFYQRTDHKLIPKLSFCRLVKELLSNAVG
GGSEQLRIQTYALDALQEAAESFMVRFFEESNLCAIHAKRVTLMPKDMQL
LKALKYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007749XLOC_007749Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013881TCONS_00013881Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 137..157
score: 52.67
coord: 121..137
score: 58.44
coord: 17..31
score: 32.75
coord: 103..121
score: 53.55
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 53..156
e-value: 2.0E-35
score: 133.7
NoneNo IPR availableGENE3D1.10.20.10coord: 2..157
e-value: 4.4E-41
score: 139.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 26..150
e-value: 2.7E-33
score: 115.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 37..151

Blast
[Close]
BLAST of TCONS_00013881-protein vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.789e-29
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0 
Query:   54 SGIKK-RKWKAGTKALREIRFYQRTDHKLIPKLSFCRLVKELLSNAVGGGSEQLRIQTYALDALQEAAESFMVRFFEESNLCAIHAKRVTLMPKDMQLLKALK 155
             G+KK  +++ GT ALREIR YQ++   LI KL F RLV+E+  +        LR Q+ A+ ALQEA+E+++V  FE++NLCAIHAKRVT+MPKD+QL + ++
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
BLAST of TCONS_00013881-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H332.789e-2950.49Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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