TCONS_00013862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013862
Unique NameTCONS_00013862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013862 ID=TCONS_00013862|Name=TCONS_00013862|organism=Clytia hemisphaerica|type=transcript|length=1204bp
tggaacgctttagcatacatagaaaaaaagttcaaagggttcaaagttca
cggaaaaatgaaacatttggtttgacatcaacgaaagttgcatgacttct
ggacactgctgttatggtgtccattccagccaagccatattttatcattc
tacagaAATCCCCGCTTTTGCACTTGTACCtgcaaaacctcaaattttgc
acctgcACTTGAATTTTTCCGAGTTGTGCACTCGAGATCTCGAGCAAACG
TGCCACACTCTGCAAACCAAACTGGCCCCACCACAAGACAAGACAAGCTG
TCTGATGACAAGCTAAAACATTAGGAAAAGTTTTTGGATaggaaaattca
aattcaataataACATATATATAACACTTACCATTCTGCATAAAAGTCTA
CAACCACAAGCTGTTCGGATGGTGTTTGTGATaactcttttgaaaaatta
atatcAGAAAGAATTTCTACGACAGCTGTAGCGGTCGCCATCTTgaggga
aaacgaaagtagtttgCAGCGATGGCTTAAGTTTGTTTACAAACCATAAG
TGACATTGGTTTGTAGCAAAGTAGATATGACTTCTACCTTCGATTCGGCC
ATTTTTCGGGAAACTCGTGAACAAATTTTTCAGAcataaaaagtatattt
taaagTACCAGAACTTACAACAGGAGAAATGTCGAACATCTTCAACAATC
AATTTGATCCCACAGAGGACACAGAAGACGAATTTGGAGGAAAGCTTTCA
CAAAATAAAGTACACATTCGTATTCAACAGAGAAACGGTCGTAAAACTAT
TACAACACTTCAAGGAATAGAAGATAAATATGATCAAAAGAAACTAgcaa
aagcattcaaaaagGAATTCAACTGTAACGGAACAGTGGTCGAAGATGAA
CAATACGGTGAAGTTATACAATTAAGTGGAGATCAAAGAGCAAACATACA
ACAGTTTCTCGTTGATGTTGGTATATGTAAAAAAGACCATTTGGTGGTTC
ACGGTTTCTAAGAATCTATTTGGTATATCTTATACTGAATGCAATTCACC
ATCTCTTCGCATCTCtagaaattttagtttttttctctttGCACCTGAAT
GATGATATTATTTAAGAATGCTTTATTTTGTAAATACAAATTGCAATGCA
ATGACTTTGGATCAGGAAACTCATTGGGGAAAAGAAAagaatgttgaatt
ttct
Run BLAST on NCBI

protein sequence of TCONS_00013862-protein

>TCONS_00013862-protein ID=TCONS_00013862-protein|Name=TCONS_00013862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MSNIFNNQFDPTEDTEDEFGGKLSQNKVHIRIQQRNGRKTITTLQGIEDK
YDQKKLAKAFKKEFNCNGTVVEDEQYGEVIQLSGDQRANIQQFLVDVGIC
KKDHLVVHGF
Run BLAST on NCBI

transcript from alignment at sc0000174:685090..690183+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013862 ID=TCONS_00013862|Name=TCONS_00013862|organism=Clytia hemisphaerica|type=transcript|length=5094bp|location=Sequence derived from alignment at sc0000174:685090..690183+ (Clytia hemisphaerica)
tggaacgctttagcatacatagaaaaaaagttcaaagggttcaaagttca
cggaaaaatgaaacatttggtttgacatcaacgaaagttgcatgacttct
ggacactgctgttatggtgtccattccagccaagccatattttatcattc
tacagaAATCCCCGCTTTTGCACTTGTACCtgcaaaacctcaaattttgc
acctgcACTTGAATTTTTCCGAGTTGTGCACTCGAGATCTCGAGCAAACG
TGCCACACTCTGCAAACCAAACTGGCCCCACCACAAGACAAGACAAGCTG
TCTGATGACAAGCTAAAACATTAGGAAAAGTTTTTGGATaggaaaattca
aattcaataataACATATATATAACACTTACCATTCTGCATAAAAGTCTA
CAACCACAAGCTGTTCGGATGGTGTTTGTGATaactcttttgaaaaatta
atatcAGAAAGAATTTCTACGACAGCTGTAGCGGTCGCCATCTTgaggga
aaacgaaagtagtttgCAGCGATGGCTTAAGTTTGTTTACAAACCATAAG
TGACATTGGTTTGTAGCAAAGTAGATATGACTTCTACCTTCGATTCGGCC
ATTTTTCGGGAAACTCGTGAACAAATTTTTCAGAcataaaaagtatattt
taaagTACCAGAACTTACAACAGGAGAAATGTCGAACATCTTCAACAATC
AATTTGGTAAgatattatcatttttttttgaaaacttgctTTTAAAACCA
TAACTTTTAGTAAGTCATGTTTTGTGGATATTTCCAAAATGATAAAAGGG
ATGGCGATTGCATCAGCCCAGCCAGCATGACACTCCTAcatctgatttat
tttttcttacatGAAAAGTTTcatatcaacataaaaggggttctgttttc
gcaaagcaaagaaatctcaaaatgtacaaGAAATCGACCCATTATTAATT
AATGCAGAATTTAAATAaaaggggccgtcgacaaacgattttcctttttt
ttaaccgcttctggccgtaaggggtgggtgggggtcactgcaatgccgtt
aaaaaagttttaaaaaaagggAAAGTTTTGAGTCAAAATTTCATTGCTTC
AACCCCCCTGGCCACAGCGCACAGGGAGGCTAAAAGGTTCATCAACAACT
ATCACCTAGAAATAGCTTTAGGTCAGGGGCCATCTACTCAGCTAGGGGTC
ACCATCATTTattcaaactaaaatggctGAATTCTAAATTATTGTGTTAA
TTCAGTCACAGCGAATTTAGAATAGCAAAAACTTCAGCATGCAGCGCAAA
ACTTTGTCCATTTCATAGATTTCATTAtacattttttcacatttaattaA
AGTTCTGTCTCAGTGAGACGGTGATatcttttggtatttttgtcaaCAGA
CTTATGTAGCATTCAATTGTGCTTAAAAAAGAGATTTGAAGCACTTCTAA
AGATTCATCttagttttcaaattttccggCTAGTACGAAACGCAGGTTCA
GGTTACAGGTTTCAGGGccagggttcaggtttcagggccAGGGTTCAGGG
TTCAGAGTTCAGGTTAAAATTGTCTACAATNTTCAGGTTACAGGGCCAGG
GTTCAGGTCTCAGGGccagggttcaggtttcagggccagggttcaggttt
cagggccAGGGTTCAGAGGGTTCAGGTTAAAATTGTCTACAATACAGACT
TGCCTTTTTCAAATTACTGACCTCTTTACTTCTCTTTTCTCTTTGCTCTC
TTTGTGTGGGGGGAATCAAACAAAAAAGTGAGGGCTGAATATGGATGCAC
AAGAATGCTTTCACACCTGACCTTTCACATctttatttgataaaagtgtT
TACAGTCAGTGTTTCGCTTGAgtaataaaagaataaaagctACGTTGTTA
CGAACGACaatgaatgaaaaaattaagttagtTTTGCCAGGTTTTAcgga
aaagagaaaaaaaatttgtcagcTTCTATTCCAGCTAATTTCATCATACC
GAATAAGTCTTATAAAAAcctatttcttttcaaaaaatgggtGGGTGATT
TGATTACTTTcttgctttgaaagaaaaaataatttaatgataCGGATGAT
TTCCACTGGGcccagtatggattccacgaaatctcgcgccaaagatattt
ttccgtgcagcaagcctcacgccaagcaaaatttctatTGTACCaacatt
taatttttcaataagggtgcaagatgggaaaagaggcgcatgcgccaaca
taattaataaattgacgcgagcgcaagcgagcgaaagcaaatttagccaa
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaat
caaacaatctttgtaagtacccttacgccaatgcgccaaaaacgtttcag
ttgtacgccgaagaacttcggcgttagttacacgaaatccatactggCAC
TGGGCCTGATCTTACTACTCTTACAAAAAACGATAAGCGTTTTGCCATAT
TTCTTTTTACAGGAGGAATAatagaatttattatttttcgtTATTATTCT
GCCCATTAATACATTTTTCAATATAATAGTAATTGTTCTTGGTCAATGCT
TTGCGTTATAATTCTGCTTGTAATAGAATATTTTAATTTCAATAATCTTA
ATTATTGTCTATTCAACCAGTTTTGTAACAAAAAGATAATTTCTACTACG
TCAATTGAATTATGAAATATTTTCAAAATCAAAGCAACGCTGAAAGTAGC
AGTAGTAGTAGTCAGTACCTGCTGTCTcatattttaaaaagtattgttCA
CCACcaaaaactattaaaagtttaaaaagaaaacacactTTTATTATATA
GAACACAAACTCTAGCAAATGGTCTGcagaataaataaatatacCTCGGA
ACATTCTGGTCTGCAATGTAGACAATTTTAACATGAACCTTGAAACCTGA
ACCCTGGCTctgaaacctgaaccctggcagaccctggccctgaaacctga
accctgACCCTGAAACCTGTGACCTGGACCTGCGTTTCGTACTAGCCGCA
AATTTTCATAGTTTCTCAATCTTAAGGGCCACctagaatatttttccaaa
ttggTATCCAAATTCGTATTCTAATAAGCCATGTTTCATAAGAAACTATT
TTACAATGATCCTTGTcaattttgattaatttgaaatttgctcgCGGTTT
AGATCCCACAGAGGACACAGAAGACGAATTTGGAGGAAAGCTTTCACAAA
ATAAAGTACACATTCGTATTCAACAGAGAAACGGTCGTAAAACTATTACA
ACACTTCAAGGAATAGAAGATAAATATGATCAAAAGAAACTAgcaaaagc
attcaaaaaggtACCACTTTTTCGTGCTTCCTCAAAAATCAGAAACATTT
GCAACTTTaattctaaaaacatttttaggttatGTTAATCATATAATCAC
TTTATTAAAAGCTATACAATACAGCTACACAAGTTTCGGATCAAGGCTGG
GATCGCTTAGCATTCtagtttatcatttgaaaaatttgctttgaccaaCA
CTGATATTTACCATATATGGTTATTGGGTCAAGAGCTATCGTTTGCAatg
cttttactttacgagataaTCAGAGATAATGAAACAGATTTTGCTAATTT
CAGATTTCGAACAAAGAATAAATGTGTAGCTGGCCTGAGAGTCAACTATG
GTTTGGACCAGAATAATACCAAAAGCCTTTCCCTTCCTTTGTTCATTTAG
AGGGTTACGTTTAAAAAATATGTAATGATAATGTTGTTTATTCTTCAGGA
ATTCAACTGTAACGGAACAGTGGTCGAAGATGAACAATACGGTGAAGTTA
TACAATTAAGTGGAGATCAAAGAGCAAACATACAACAGTTTCTCGTTGAT
GTTGGTATATGTAAAAAAGACCATTTGGTGGTTCACGGTTTCTAAGAATC
TATTTGGTATATCTTATACTGAATGCAATTCACCATCTCTTCGCATCTCt
agaaattttagtttttttctctttGCACCTGAATGATGATATTATTTAAG
AATGCTTTATTTTGTAAATACAAATTGCAATGCAATGACTTTGGATCAGG
AAACTCATTTGGGAAAAGAAAagaatgttgaattttctggtattttatat
ataaaacatgaaaatgttTCTAATTATGTTTGTCCTTTTGCCCACTCGTC
CACTTTGACCACTACTTTTACTAANCATTTTTAGGTTATGTTAATCATAT
AATCACTTTATTAAAAGCTATACAATACAGCTACACAAGTTTCGGATCAA
GGCTGGGATCGCTTAGCATTCtagtttatcatttgaaaaatttgctttga
ccaaCACTGATATTTACCATATATGGTTATTGGGTCAAGAGCTATCGTTT
GCAatgcttttactttacgagataaTCAGAGATAATGAAACAGATTTTGC
TAATTTCAGATTTCGAACAAAGAATAAATGTGTAGCTGGCCTGAGAGTCA
ACTATGGTTTGGACCAGAATAATACCAAAAGCCTTTCCCTTCCTTTGTTC
ATTTAGAGGGTTACGTTTAAAAAATATGTAATGATAATGTTGTTTATTCT
TCAGGAATTCAACTGTAACGGAACAGTGGTCGAAGATGAACAATACGGTG
AAGTTATACAATTAAGTGGAGATCAAAGAGCAAACATACAACAGTTTCTC
GTTGATGTTGGTATATGTAAAAAAGACCATTTGGTGGTTCACGGTTTCTA
AGAATCTATTTGGTATATCTTATACTGAATGCAATTCACCATCTCTTCGC
ATCTCtagaaattttagtttttttctctttGCACCTGAATGATGATATTA
TTTAAGAATGCTTTATTTTGTAAATACAAATTGCAATGCAATGACTTTGG
ATCAGGAAACTCATTGGGGAAAAGAAAagaatgttgaattttct

Coding sequence (CDS) from alignment at sc0000174:685090..690183+

>TCONS_00013862 ID=TCONS_00013862|Name=TCONS_00013862|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000174:685090..690183+ (Clytia hemisphaerica)
ATGTCGAACATCTTCAACAATCAATTTGATCCCACAGAGGACACAGAAGA
CGAATTTGGAGGAAAGCTTTCACAAAATAAAGTACACATTCGTATTCAAC
AGAGAAACGGTCGTAAAACTATTACAACACTTCAAGGAATAGAAGATAAA
TATGATCAAAAGAAACTAgcaaaagcattcaaaaagGAATTCAACTGTAA
CGGAACAGTGGTCGAAGATGAACAATACGGTGAAGTTATACAATTAAGTG
GAGATCAAAGAGCAAACATACAACAGTTTCTCGTTGATGTTGGTATATGT
AAAAAAGACCATTTGGTGGTTCACGGTTTCTAAATGTCGAACATCTTCAA
CAATCAATTTGATCCCACAGAGGACACAGAAGACGAATTTGGAGGAAAGC
TTTCACAAAATAAAGTACACATTCGTATTCAACAGAGAAACGGTCGTAAA
ACTATTACAACACTTCAAGGAATAGAAGATAAATATGATCAAAAGAAACT
AgcaaaagcattcaaaaagGAATTCAACTGTAACGGAACAGTGGTCGAAG
ATGAACAATACGGTGAAGTTATACAATTAAGTGGAGATCAAAGAGCAAAC
ATACAACAGTTTCTCGTTGATGTTGGTATATGTAAAAAAGACCATTTGGT
GGTTCACGGTTTCTAAATGTCGAACATCTTCAACAATCAATTTGATCCCA
CAGAGGACACAGAAGACGAATTTGGAGGAAAGCTTTCACAAAATAAAGTA
CACATTCGTATTCAACAGAGAAACGGTCGTAAAACTATTACAACACTTCA
AGGAATAGAAGATAAATATGATCAAAAGAAACTAgcaaaagcattcaaaa
agGAATTCAACTGTAACGGAACAGTGGTCGAAGATGAACAATACGGTGAA
GTTATACAATTAAGTGGAGATCAAAGAGCAAACATACAACAGTTTCTCGT
TGATGTTGGTATATGTAAAAAAGACCATTTGGTGGTTCACGGTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007742XLOC_007742Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013862-proteinTCONS_00013862-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013862-exon-sc0000174-1491911889:685090..685795TCONS_00013862-exon-sc0000174-1491911889:685090..685795Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1510915933:685090..685795TCONS_00013862-exon-sc0000174-1510915933:685090..685795Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1575043694:685090..685795TCONS_00013862-exon-sc0000174-1575043694:685090..685795Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1491911889:688442..688599TCONS_00013862-exon-sc0000174-1491911889:688442..688599Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1510915933:688442..688599TCONS_00013862-exon-sc0000174-1510915933:688442..688599Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1575043694:688442..688599TCONS_00013862-exon-sc0000174-1575043694:688442..688599Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1491911889:689844..690183TCONS_00013862-exon-sc0000174-1491911889:689844..690183Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1510915933:689844..690183TCONS_00013862-exon-sc0000174-1510915933:689844..690183Clytia hemisphaericaexon
TCONS_00013862-exon-sc0000174-1575043694:689844..690183TCONS_00013862-exon-sc0000174-1575043694:689844..690183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:685090..690183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
185.778	189.222	225.495	228.94	163.934	52.4471	137.196	137.181	143.343	120.109	138.524	106.176	90.4485	68.746	95.0318	65.3426	73.3577	69.3759	63.3419	62.3798	171.524	165.116	162.22	161.423	42.225	68.2277	171.861	179.905	105.5	104.049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001950SUI1
IPR005874SUI1_euk
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0003743 translation initiation factor activity
Blast
[Close]
BLAST of TCONS_00013862 vs. Swiss-Prot (Human)
Match: EIF1 (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.040e-31
Identity = 69/113 (61.06%), Postives = 84/113 (74.34%), Query Frame = 1 
Query:  679 MSNIFN-NQFDPTEDTE--DEFGGKLSQNKVHIRIQQRNGRKTITTLQGIEDKYDQKKLAKAFKKEFNCNGTVVEDEQYGEVIQLSGDQRANIQQFLVDVGICKKDHLVVHGF 1008
            MS I N + FDP  D    D+     +++ +HIRIQQRNGRKT+TT+QGI D YD+KKL KAFKK+F CNGTV+E  +YGEVIQL GDQR NI QFLV++G+ K D L VHGF
Sbjct:    1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
The following BLAST results are available for this feature:
BLAST of TCONS_00013862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF15.040e-3161.06Eukaryotic translation initiation factor 1 OS=Homo... [more]
back to top