TCONS_00013829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013829
Unique NameTCONS_00013829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013829 ID=TCONS_00013829|Name=TCONS_00013829|organism=Clytia hemisphaerica|type=transcript|length=2632bp
aatgacACCTTGTTATTAAAACTGTTACGAACGGTATATTTCACACGCAA
GGGTTTGATCCTCGTTTTTAATCCGCCTAATTTATTAGAGGACAACGTGG
TCGTCACTAAAAAAAGATTCTCTCTAATGAATTGTATTACTTAAAATTGT
ACATGTTGACTATTTCTGTTTTCTATTTAAGGAATTAAAAAGAATAAgat
caaattccaaagttaaaaaaagaaacgaaaccaaaatgaaatccaaaatg
GATGATGCAGTTTTATATGTGATCATTTTCGTGGCTTTGATTTTCTTGTA
TTTCATTTATTCATTCTTTGCATGCATGTTTCCAAAAAGAGCTGATTCAT
CTAAAGATTCGACCAAAAAGGAGTAAATTTTTGGATCCATTTAAATTAAA
TAATTTGGTGGTTATTCTATGGTATCATTCAATAACTGTATCTGGGAAGC
ATTCTTGAGTTGATTTGTTGTGGAGGAATAATAGTTCTATTTTTCGTGGT
TTTGAGAATTCTTACGATTCCTAAGCAATATTCTGAGTGTATTCTTTGTG
TATTGATTGATTCATTCTTTGTAATTTATATTTGAACTTTACTTGAGCAT
TATTACTTCTCGTGTAAAGATTTTCACAATGANTTATATTTGAACTTCAC
TTGAGCATTATTACTTCTCGTGTAAAGATTTTCACAATGAATCGTATTTG
GCATCGTCTTTCTTGCAATCCTAAGGAACTAAACCTTGGGCTCGTTTTAT
CATGCGGTCAATCATTTCGTTGGAAGCAGTCTACACAAGATCCAAACACA
TGGGTTGGTGTTTTGAACCGTAAACTCTGGCTTTTAAAACAGCTTGACCA
GGGAGATATTGAGTATCAAACTTCGGTTGATACCACAGAACAGAAAAAAG
CTAGCAAGCCTACAGACCCTGCTAATAAGGGTGAAATTGAGGAGAAGACA
AAATCTGTCAAGCTTGCAGGCCCTGACAAAGAAGACAACGAAGNTGGTTG
ATACCACAGAACAGAAGAAATCTGTCAAACCTACAGACCCTGCTAAAGAT
CGTAAAATTGAGGAGAAGACGAAATCTGTCAAGCTTGCAGGCCTTGAAAG
AGAAGACAACGAAACTTCAGAacagaaaaaatcaatagaTCTTACAGACC
CtgacaaagattttttaacaGACTATTTCCAAATGAATGTTAAAGTAGAA
GAATTATATCAAAAGTGGAGTGAAACAGATTTGTTTTTTCAAGAGCTTGA
AACACCTTTTTATGGCATACGTATATTACGTCAAGACCCTGTTGAGAATT
TATTCAGTTTTATATGCTCgcaaaataataatatttcgcggatttctcaa
ttggttgaaaaattagcGGAACATTATGGTGACCACATAGCGACTTTTGA
AGGGACGAAATATTATTCCTTCCCCACTATGGAAGCTTTATCGAAAACAG
GCGTTGAAGAGAATTTAAGGAAGTTGGGGTTTGGATACCGTGCCAAGTTC
ATTCAAAAGGTTGCAGAGACAGTTTGCGGTAAAGAAAATAGCGTTGATTG
GTTATTTGAGTTGAGAGCAAAACCGTATAAAGAAGCACATAGTGCCTTAT
GCACTTTATATGGTGTTGGTCCAAAGGTAGCAGATTGTGTTTGTCTGATG
TCTTTGGACAAACATGATGCGATTCCAGTGGATACACATATGTGGCAAGT
CGCTGCAAACCAATACCTTCCACATCTTAagaagaataaaaatatcactG
ATAAAGCATACAAAGAAATAGGTGATTTTTTCCGCCAACAGTTTGGAGAA
TATGCAGGATGGGCGCAATCGGTATTATTCAGTTCTGATTTGAAGAAGTT
TGAATCGTTGAAAGAAGAAGGCAAAAAGAAAATTGCCAAGCGAAGACACT
ACGAAGCATCAGATGgagtaaaaaaaactaaatccACCAAAGGTGCCGGA
AAGAAGAAACCagcgaaaaagaaaaagaaatgaagGAATTACCTTTAGAT
ATCTTTCATCATTCACTGGCCTCATGTGGTTACATGCTTTTGTACTTTTG
TACTTTTGTACTTTAGGCCGTGGCCAGtggattgttattgtttcaaaaat
agagaaaaaattcaaaatgtctgggACCAACTTTTTCATATGTTTCTTAC
TcgatttgagggtgctgattccaaatttgaaagtgaaacgttttggtGGC
ACTGGCCATGGCCTACTTGCAAAAGTTTGCTGCAAAGGAATTTGCATAAA
GTTAGCTTACTTTTTTGCACAAACACTTCAGCATAATTTTCAAaacagtt
tttgaaatttcattctgAAGTGTAAACTTTCCACTACATGATTGTAACCT
TGTAACTAAATGTTGGTTCAGAAAAATCTTTGTCTAATAATTATTAGATT
GTAAAGATATTGCCACCACTATTAGGAGTATGATTTATAATTTATATATG
CGctaaattcatttatttattgTATTGTGCTAAACTTTTAAGTTATATAC
TTTATATGAATTTTCATGGGGATTGAATTTCGTGGATGGCACTATTGAAA
GATttaattttgactatttttttgacttttactcCAAATTATGCATGTTG
ATTGtcgaaatacgcattattaaaCATTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00013829-protein

>TCONS_00013829-protein ID=TCONS_00013829-protein|Name=TCONS_00013829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MNVKVEELYQKWSETDLFFQELETPFYGIRILRQDPVENLFSFICSQNNN
ISRISQLVEKLAEHYGDHIATFEGTKYYSFPTMEALSKTGVEENLRKLGF
GYRAKFIQKVAETVCGKENSVDWLFELRAKPYKEAHSALCTLYGVGPKVA
DCVCLMSLDKHDAIPVDTHMWQVAANQYLPHLKKNKNITDKAYKEIGDFF
RQQFGEYAGWAQSVLFSSDLKKFESLKEEGKKKIAKRRHYEASDGVKKTK
STKGAGKKKPAKKKKK
Run BLAST on NCBI

transcript from alignment at sc0000174:120092..126532+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013829 ID=TCONS_00013829|Name=TCONS_00013829|organism=Clytia hemisphaerica|type=transcript|length=6441bp|location=Sequence derived from alignment at sc0000174:120092..126532+ (Clytia hemisphaerica)
aatgacACCTTGTTATTAAAACTGTTACGAACGGTATATTTCACACGCAA
GGGTTTGATCCTCGTTTTTAATCCGCCTAATTTATTAGAGGACAACGTGG
TCGTCACTAAAAAAAGATTCTCTCTAATGAATTGTATTACTTAAAATTGT
ACATGTTGACTATTTCTGTTTTCTATTTAAGGAATTAAAAAGAATAAgat
caaattccaaagttaaaaaaagaaacgaaaccaaaatgaaatccaaaatg
GATGATGCAGTTTTATATGTGATCATTTTCGTGGCTTTGATTTTCTTGTA
TTTCATTTATTCATTCTTTGCATGCATGTTTCCAAAAAGAGCTGATTCAT
CTAAAGATTCGACCAAAAAGGAGTAAATTTTTGGATCCATTTAAATTAAA
TAATTTGGTGGTTATTCTATGGTATCATTCAATAACTGTATCTGGGAAGC
ATTCTTGAGTTGATTTGTTGTGGAGGAATAATAGTTCTATTTTTCGTGGT
TTTGAGAATTCTTACGATTCCTAAGCAATATTCTGAGTGTATTCTTTGTG
TATTGATTGATTCATTCTTTGTAATTTATATTTGAACTTTACTTGAGCAT
TATTACTTCTCGTGTAAAGATTTTCACAATGANTTATATTTGAACTTCAC
TTGAGCATTATTACTTCTCGTGTAAAGATTTTCACAATGAATCGTATTTG
GCATCGTCTTTCTTGCAATCCTAAGGAACTAAACCTTGGGCTCGTTTTAT
CATGCGGTCAATCATTTCGTTGGAAGCAGTCTACACAAGATCCAAACACA
TGGGTTGGTGTTTTGAACCGTAAACTCTGGCTTTTAAAACAGCTTGACCA
GGGAGATATTGAGTATCAAACTTCGGTTGATACCACAGAACAGAAAAAAG
CTAGCAAGCCTACAGACCCTGCTAATAAGGGTGAAATTGAGGAGAAGACA
AAATCTGTCAAGCTTGCAGGCCCTGACAAAGAAGACAACGAAGNTGGTTG
ATACCACAGAACAGAAGAAATCTGTCAAACCTACAGACCCTGCTAAAGAT
CGTAAAATTGAGGAGAAGACGAAATCTGTCAAGCTTGCAGGCCTTGAAAG
AGAAGACAACGAAACTTCAGAacagaaaaaatcaatagaTCTTACAGACC
CtgacaaagattttttaacaGACTATTTCCAAATGAATGTTAAAGTAGAA
GAATTATATCAAAAGTGGAGTGAAACAGATTTGTTTTTTCAAGAGCTTGA
AACACCTTTTTATGGCATACGTATATTACGTCAAGACCCTGTTGAGAATT
TATTCAGTTTTATATGCTCgcaaaataataatatttcgcggatttctcaa
ttggttgaaaaattagcGGAACATTATGGTGACCACATAGCGACTTTTGA
AGGGACGAAATATTATTCCTTCCCCACTATGGAAGCTTTATCGAAAACAG
GCGTTGAAGAGAATTTAAGGAAGTTGGGGTTTGGATACCGTGCCAAGTTC
ATTCAAAAGGTTGCAGAGACAGTTTGCGGTAAAGAAAATAGCGTTGATTG
GTTATTTGAGTTGAGAGCAAAACCGTATAAAGAAGCACATAGTGGTAcag
tatttaaaaaacaaatttaaaataaattttgaaaaatcacgcTTCCATTA
AACCTTAATatatccccttctcacagacctactgggaacccttcccactg
gaaaattgtccaaaatatcgtcctcaGTGAGAAATTATCCTTCAACCTTT
GTCCCCACtgataataatcaaataaatccTCACTGcgaaatattatgcta
tttttcgcatccccactgaattttctgacttgaaaacaaaagaatcgaaA
TCCCCAGTCgtaaaaaatatgagaatatcaatcccccatcgagtttcagt
ttcAATTATTCTTATcctcactggctgaaaaaatcctaccggatctgtga
gaagagggtgtctTAATGGCATTCCTTATGGCAATTGGGCTTTTTCAGAA
AGATTTTACCCCAATGCCAAAGGAATTATATCTACCTTCCGTCTAGGGAG
AAGGGATAAAAAAAGCCTGAAAAATCCAGGGACTCCGTGGAATACGGACG
AAAATCAAACGTAATACCtcaaaaattagccaaaaaggTTTCtgaaattt
ggtgaaaaatgATCAGTTTTGATCTTTGTGAATTCCCCACTCTTTCTTAA
GGTGACcctatttagaatttttggatTTCAGGAGGAAGAGGCAGTGTAAG
GTTGGACCTTCAGATGGTCGTGGGGTTTTGTGTGTTTCTGTTAGGAATAT
AATTTATTTAAATGCATTTTCATGATGTCAGTTATACTTTTCTTTCGCTT
TCAGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGTAGCAGATTGTGT
TTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAGTGGATACACATA
TGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTTAagaagaataaa
aatatcactGATAAAGCATACAAAGAAATAGGtatttcacaaagtttttt
tataaattcaattttgtttggatttaaaggttttgtttttacataagtgt
tcctgtttcatatcagacacatatttcatatcaggacagtgtctcccaTT
TGTTATACTTTGCTGATatcagcaaaaaatgtttttcttttcatctttct
gaccaatcttgctccacatccgtcatttaaaaacaaaacctttaacacag
gttaaatcgtgctttaattttcatttgataaGCGTTACAATATTCGAATG
GCTGGGTGGCCGCCTTCCGCCAGCTGAGTCTACTTTGTCCATAGCCACGC
GACAGCAGGTTCATAATGGCCATCGCAACTCCCTGTCCAAGTCGACGCTG
TAACTGAAAGCTGCCAGGGTGAAATATTATTtcctccctccctccctgca
gttatggttgtaggcAGTACCTGTAGAATAAACGAAAATATTGTCACGga
aacttttcaaaacttaCTCATAAATTCCCTGGTCTTTTTGTTGTAAGTTA
TAACTGCCTTTAAAATCTTTCCATATCCACTAGGTGATTTTTTCCGCCAA
CAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTAAGCCATAATTCAAT
CTTTTCACGGTAAATtaacacttttaccgtcctcgattttgcagcttcag
tcactctaccgtcttCAAAAGAGcaacataaactcgctattgtttttgaa
aatccgCGAAActttaggctacgtcatatcttccgtcgtttcgagcgtaa
aactcatACTCCCTagaagcctggagctgtctttTGTGTAGGAAGCTTCT
GAtcggtcaagcgctgaaattacgttgtaatgtcacgtgaccaaCATGGG
ATTGTCTATCTAACCACGGTACACTTTTCACCTAAAGTACTCTATCTACA
ATCGGcaccgaaatatttggcacaaaaggggaattccctcaaaaatttaa
aacagcaAGTGAGTATTAAGTGCTTTAAAATACGGTtacatggcccccgg
cgtgtgcatcgaattgagggggcaaaaaaatatgtcgcccaccatggttg
ggcgacgaagaaaattttcgactttttgcccttatttcacccctctaaac
ggtatatataagatttttcaaagtaaaaaaaaaatatgggttataaagta
gagttttaactctgacttTTAACACGAGACTTAACACTTAGGACCTAAAG
GATCTGAgtatctaaaagctcaaaaatgttccaatatggCTGAGaacata
gcctggaagccacttaaccttTCCCAAgtcgaaatattcaataaaagaaa
gtggaagtactgaaattgcaattctcggccgagctttaaattctgaaaaa
cattaaaatacccaaatttgcTAATATATTTCGGCACTGATTGTAGCTCT
TCGGGCGTTATGGATTTGTGATTATCACGTTAAAAGCGAAATTGTTTTCT
TAAAGAAATTGACTATGTATGACACATGACTGTACATGTATATTATGTCA
AAAGGAAACAATTCCTTTGACTATCCTttgtttgtttatgttgaaaTCAC
ATTGCCTAATGTTTTTCTGTGTGACGTCATCATAATAATGCAGACATATA
CCAGATATGTTATTATTGTACATCTCttgtttgaaacttttcaaagcaat
ttttgtTGATGTGTTTTTGTGTACGATTTGATTTGCAAGATGTTGCTATG
TTTTTGTTGTTTAAAAGAGTTCCTTCTTTTCTTGTCCATTGATTATTTGA
GATCATTGCTTTGGGAAAGAACTAATACCAGGTCATTTTCAAGATAAACG
CTGCTGATTGGTTACCAGTAACATAATTGTGGTTAGAAAAACCATAACTC
ACCTTAAGTGAATCAATCTTCGTGTGGATATTTTTTCGCAAATTGATGAG
AATCCAACATTTTCGCTTGGACTAAATTTTGCGAATCGGCTTCTTTTTCG
ACCAATTTATTTCATCTccctaggggttttggccaaaattctgatattga
atttttctcaagaactaattttcgcgaaaaatgcTGAAATTCGCTAAAAC
TAATCCACGTGGAAATTTTGACTACCGTTTGACCTGAATAAGAAGTTATA
TGGGTTACTAAAAGGTGGTTGGTCCTATCAGCGATGGTTATGACTTTACA
GTACAAGCCTACTAGTAGTATTTAAACATGCTTCAATTTCTTCCATTTAA
CTGTAGGTATTATTCAGTTCTGATTTGAAGAAGTTTGAATCGTTGAAAGA
AGAAGGCAAAAAGGTAAGTTGCAATATTTCTACCCTATCTGATTCTTTAG
TAGTTAAGAGTCTCTCGAGAACGCCGTAGGAGATcagaaatttttcaagt
tatgaAAATTGTTTGATATTGATTTTATGTGGATGGAGAGAAAATTTGAA
GTATATTTTCCGAAATTCTTAGGCTTTGTagattttgtaaaataaaaatg
caaaatactgaaaaaacatttcaaacttaAAGCCTACCGTataaattttt
tcgattttaggaggggcgtttattcgaggggggcgtttaaaagaaagagg
cgtttattgaattattttagtctaaagtcgaatatttagaacaaatatac
cctttgttttagttctttatcaggattttagtgcaaaatttctttggttc
aacgattgaaattgcatcgaaaaatgctttttggttacaagaaatgacta
aaatcttccttttcaaacccaatcaacactgatattgaagtattaaagtc
ataagtttctaataaacgcccctcccctaGTGGGGGCGTtcattcgaagg
gggcgtttatttgaggggggcgtttattaaataattttccttttaggagg
ggcgtttattcgaggggagggggcgtttaaaagaagggggcgtttattcg
aagtaatacggtattcatgatatgcaccactgcaatgacttcacgaaatt
atgcaacttttctgtttttattccacccaatacgtcactttttctattgt
ttaagtgacgtattttgtggaaaatgttaaaagttctcagaaggctctcc
agtggtgcatatctaTCATGAATAAAAAAGTAAGATCATACTGTatcaaa
acgttaaaaatctTACCGTTTCTTTTATTTACACTAGAAAATTGCCAAGC
GAAGACACTACGAAGCATCAGATGgagtaaaaaaaactaaatccACCAAA
GGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaagaaatgaagGAATTA
CCTTTAGATATCTTTCATCATTCACTGGCCTCATGTGGTTACATGCTTTT
GTACTTTTGTACTTTTGTACTTTAGGCCGTGGCCAGtggattgttattgt
ttcaaaaatagagaaaaaattcaaaatgtctgggACCAACTTTTTCATAT
GTTTCTTACTcgatttgagggtgctgattccaaatttgaaagtgaaacgt
tttggtGGCACTGGCCATGGCCTACTTGCAAAAGTTTGCTGCAAAGGAAT
TTGCATAAAGTTAGCTTACTTTTTTGCACAAACACTTCAGCATAATTTTC
AAaacagtttttgaaatttcattctgAAGTGTAAACTTTCCACTACATGA
TTGTAACCTTGTAACTAAATGTTGGTTCAGAAAAATCTTTGTCTAATAAT
TATTAGATTGTAAAGATATTGCCACCACTATTAGGAGTATGATTTATAAT
TTATATATGCGctaaattcatttatttattgTATTGTGCTAAACTTTTAA
GTTATATACTTTATATGAATTTTCATGGGGATTGAATTTCGTGGATGGCA
CTATTGAAAGATttaattttgactatttttttgacttttactcCAAATTA
TGCATGTTGATTGtcgaaatacgcattattaaaCATTTTAC

Coding sequence (CDS) from alignment at sc0000174:120092..126532+

>TCONS_00013829 ID=TCONS_00013829|Name=TCONS_00013829|organism=Clytia hemisphaerica|type=CDS|length=4005bp|location=Sequence derived from alignment at sc0000174:120092..126532+ (Clytia hemisphaerica)
ATGAATGTTAAAGTAGAAGAATTATATCAAAAGTGGAGTGAAACAGATTT
GTTTTTTCAAGAGCTTGAAACACCTTTTTATGGCATACGTATATTACGTC
AAGACCCTGTTGAGAATTTATTCAGTTTTATATGCTCgcaaaataataat
atttcgcggatttctcaattggttgaaaaattagcGGAACATTATGGTGA
CCACATAGCGACTTTTGAAGGGACGAAATATTATTCCTTCCCCACTATGG
AAGCTTTATCGAAAACAGGCGTTGAAGAGAATTTAAGGAAGTTGGGGTTT
GGATACCGTGCCAAGTTCATTCAAAAGGTTGCAGAGACAGTTTGCGGTAA
AGAAAATAGCGTTGATTGGTTATTTGAGTTGAGAGCAAAACCGTATAAAG
AAGCACATAGTGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGTAGCA
GATTGTGTTTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAGTGGA
TACACATATGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTTAaga
agaataaaaatatcactGATAAAGCATACAAAGAAATAGGTGATTTTTTC
CGCCAACAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTATTATTCAG
TTCTGATTTGAAGAAGTTTGAATCGTTGAAAGAAGAAGGCAAAAAGAAAA
TTGCCAAGCGAAGACACTACGAAGCATCAGATGgagtaaaaaaaactaaa
tccACCAAAGGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaagaaatg
aATGAATGTTAAAGTAGAAGAATTATATCAAAAGTGGAGTGAAACAGATT
TGTTTTTTCAAGAGCTTGAAACACCTTTTTATGGCATACGTATATTACGT
CAAGACCCTGTTGAGAATTTATTCAGTTTTATATGCTCgcaaaataataa
tatttcgcggatttctcaattggttgaaaaattagcGGAACATTATGGTG
ACCACATAGCGACTTTTGAAGGGACGAAATATTATTCCTTCCCCACTATG
GAAGCTTTATCGAAAACAGGCGTTGAAGAGAATTTAAGGAAGTTGGGGTT
TGGATACCGTGCCAAGTTCATTCAAAAGGTTGCAGAGACAGTTTGCGGTA
AAGAAAATAGCGTTGATTGGTTATTTGAGTTGAGAGCAAAACCGTATAAA
GAAGCACATAGTGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGTAGC
AGATTGTGTTTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAGTGG
ATACACATATGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTTAag
aagaataaaaatatcactGATAAAGCATACAAAGAAATAGGTGATTTTTT
CCGCCAACAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTATTATTCA
GTTCTGATTTGAAGAAGTTTGAATCGTTGAAAGAAGAAGGCAAAAAGAAA
ATTGCCAAGCGAAGACACTACGAAGCATCAGATGgagtaaaaaaaactaa
atccACCAAAGGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaagaaat
gaATGAATGTTAAAGTAGAAGAATTATATCAAAAGTGGAGTGAAACAGAT
TTGTTTTTTCAAGAGCTTGAAACACCTTTTTATGGCATACGTATATTACG
TCAAGACCCTGTTGAGAATTTATTCAGTTTTATATGCTCgcaaaataata
atatttcgcggatttctcaattggttgaaaaattagcGGAACATTATGGT
GACCACATAGCGACTTTTGAAGGGACGAAATATTATTCCTTCCCCACTAT
GGAAGCTTTATCGAAAACAGGCGTTGAAGAGAATTTAAGGAAGTTGGGGT
TTGGATACCGTGCCAAGTTCATTCAAAAGGTTGCAGAGACAGTTTGCGGT
AAAGAAAATAGCGTTGATTGGTTATTTGAGTTGAGAGCAAAACCGTATAA
AGAAGCACATAGTGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGTAG
CAGATTGTGTTTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAGTG
GATACACATATGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTTAa
gaagaataaaaatatcactGATAAAGCATACAAAGAAATAGGTGATTTTT
TCCGCCAACAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTATTATTC
AGTTCTGATTTGAAGAAGTTTGAATCGTTGAAAGAAGAAGGCAAAAAGAA
AATTGCCAAGCGAAGACACTACGAAGCATCAGATGgagtaaaaaaaacta
aatccACCAAAGGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaagaaa
tgaATGAATGTTAAAGTAGAAGAATTATATCAAAAGTGGAGTGAAACAGA
TTTGTTTTTTCAAGAGCTTGAAACACCTTTTTATGGCATACGTATATTAC
GTCAAGACCCTGTTGAGAATTTATTCAGTTTTATATGCTCgcaaaataat
aatatttcgcggatttctcaattggttgaaaaattagcGGAACATTATGG
TGACCACATAGCGACTTTTGAAGGGACGAAATATTATTCCTTCCCCACTA
TGGAAGCTTTATCGAAAACAGGCGTTGAAGAGAATTTAAGGAAGTTGGGG
TTTGGATACCGTGCCAAGTTCATTCAAAAGGTTGCAGAGACAGTTTGCGG
TAAAGAAAATAGCGTTGATTGGTTATTTGAGTTGAGAGCAAAACCGTATA
AAGAAGCACATAGTGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGTA
GCAGATTGTGTTTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAGT
GGATACACATATGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTTA
agaagaataaaaatatcactGATAAAGCATACAAAGAAATAGGTGATTTT
TTCCGCCAACAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTATTATT
CAGTTCTGATTTGAAGAAGTTTGAATCGTTGAAAGAAGAAGGCAAAAAGA
AAATTGCCAAGCGAAGACACTACGAAGCATCAGATGgagtaaaaaaaact
aaatccACCAAAGGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaagaa
atgaATGAATGTTAAAGTAGAAGAATTATATCAAAAGTGGAGTGAAACAG
ATTTGTTTTTTCAAGAGCTTGAAACACCTTTTTATGGCATACGTATATTA
CGTCAAGACCCTGTTGAGAATTTATTCAGTTTTATATGCTCgcaaaataa
taatatttcgcggatttctcaattggttgaaaaattagcGGAACATTATG
GTGACCACATAGCGACTTTTGAAGGGACGAAATATTATTCCTTCCCCACT
ATGGAAGCTTTATCGAAAACAGGCGTTGAAGAGAATTTAAGGAAGTTGGG
GTTTGGATACCGTGCCAAGTTCATTCAAAAGGTTGCAGAGACAGTTTGCG
GTAAAGAAAATAGCGTTGATTGGTTATTTGAGTTGAGAGCAAAACCGTAT
AAAGAAGCACATAGTGCCTTATGCACTTTATATGGTGTTGGTCCAAAGGT
AGCAGATTGTGTTTGTCTGATGTCTTTGGACAAACATGATGCGATTCCAG
TGGATACACATATGTGGCAAGTCGCTGCAAACCAATACCTTCCACATCTT
AagaagaataaaaatatcactGATAAAGCATACAAAGAAATAGGTGATTT
TTTCCGCCAACAGTTTGGAGAATATGCAGGATGGGCGCAATCGGTATTAT
TCAGTTCTGATTTGAAGAAGTTTGAATCGTTGAAAGAAGAAGGCAAAAAG
AAAATTGCCAAGCGAAGACACTACGAAGCATCAGATGgagtaaaaaaaac
taaatccACCAAAGGTGCCGGAAAGAAGAAACCagcgaaaaagaaaaaga
aatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007729XLOC_007729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013829-exon-sc0000174-1491911889:120092..121685TCONS_00013829-exon-sc0000174-1491911889:120092..121685Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1510915933:120092..121685TCONS_00013829-exon-sc0000174-1510915933:120092..121685Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1575043694:120092..121685TCONS_00013829-exon-sc0000174-1575043694:120092..121685Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1491911889:122446..122622TCONS_00013829-exon-sc0000174-1491911889:122446..122622Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1510915933:122446..122622TCONS_00013829-exon-sc0000174-1510915933:122446..122622Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1575043694:122446..122622TCONS_00013829-exon-sc0000174-1575043694:122446..122622Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1491911889:123175..123224TCONS_00013829-exon-sc0000174-1491911889:123175..123224Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1510915933:123175..123224TCONS_00013829-exon-sc0000174-1510915933:123175..123224Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1575043694:123175..123224TCONS_00013829-exon-sc0000174-1575043694:123175..123224Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1491911889:124848..124904TCONS_00013829-exon-sc0000174-1491911889:124848..124904Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1510915933:124848..124904TCONS_00013829-exon-sc0000174-1510915933:124848..124904Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1575043694:124848..124904TCONS_00013829-exon-sc0000174-1575043694:124848..124904Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1491911889:125779..126532TCONS_00013829-exon-sc0000174-1491911889:125779..126532Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1510915933:125779..126532TCONS_00013829-exon-sc0000174-1510915933:125779..126532Clytia hemisphaericaexon
TCONS_00013829-exon-sc0000174-1575043694:125779..126532TCONS_00013829-exon-sc0000174-1575043694:125779..126532Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013829-proteinTCONS_00013829-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:120092..126532 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5689	12.9668	10.6149	11.2932	4.61978	3.5435	7.10655	7.28667	6.59696	4.76519	4.46098	5.51253	3.66633	3.41819	4.96282	6.53837	4.70813	6.12751	1.86612	2.6716	4.20781	3.57111	8.92108	7.19845	5.59661	5.6793	3.1127	3.4196	11.6724	10.7877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003265HhH-GPD_domain
IPR023170HTH_base_excis_C
IPR012904OGG_N
IPR011257DNA_glycosylase
Vocabulary: Biological Process
TermDefinition
GO:0006284base-excision repair
GO:0006289nucleotide-excision repair
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0008534oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0003684damaged DNA binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006281 DNA repair
biological_process GO:0006289 nucleotide-excision repair
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity
Blast
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BLAST of TCONS_00013829 vs. Swiss-Prot (Human)
Match: OGG1 (N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.850e-76
Identity = 114/247 (46.15%), Postives = 164/247 (66.40%), Query Frame = 1 
Query: 1150 PDK-DFLTDYFQMNVKVEELYQKWSETDLFFQELETPFYGIRILRQDPVENLFSFICSQNNNISRISQLVEKLAEHYGDHIATFEGTKYYSFPTMEALSKTGVEENLRKLGFGYRAKFIQKVAETVCGKENSVDWLFELRAKPYKEAHSALCTLYGVGPKVADCVCLMSLDKHDAIPVDTHMWQVAANQYL--PHLKKNKNITDKAYKEIGDFFRQQFGEYAGWAQSVLFSSDLKKFESLKEEGKKK 1881
            PD+ + +  YFQ++V + +LY  W   D  FQE+   F G+R+LRQDP+E LFSFICS NNNI+RI+ +VE+L + +G  +   +   Y+ FP+++AL+   VE +LRKLG GYRA+++   A  +  ++  + WL +LR   Y+EAH ALC L GVG KVADC+CLM+LDK  A+PVD HMW +A   Y   P   + K  + +  KE+G+FFR  +G YAGWAQ+VLFS+DL++    +E   K+
Sbjct:   90 PDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSRHAQEPPAKR 336
The following BLAST results are available for this feature:
BLAST of TCONS_00013829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OGG13.850e-7646.15N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE... [more]
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