TCONS_00013824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013824
Unique NameTCONS_00013824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013824 ID=TCONS_00013824|Name=TCONS_00013824|organism=Clytia hemisphaerica|type=transcript|length=573bp
ATGCCCGGCTTCGGATTAGCCCGGAGTACGGCTCGGGATACTCTATTTTT
CAACTCCACCGTAGATGCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAG
CTCATTATGGAAAAAAGAAGTCAGATCTGGTCAGATGACCTGATCCTGAT
GACAGTGAGGACAGGCTGGAAAGTTTTGACTATTTAATCACCAGTTTATC
TTATGGCATGATGTTAAACATGAATCATCAAAGatatcttcttcttctta
tCACTAATCTTTATATTGCTCATGGAAGAATCCTCGAAAATGGCTACCAA
GAATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTG
GTGATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGTCGTTCAACTTA
ACAAAATGGATGTATGAAGATTCTCTTATCACATACACCATGCATTGCAG
TCCAGCAGGAGAGAAGAAACATTTTTCTGTCAAGATTTACCTTTTTCATC
ACTTCTGTCCTCTTCCCAGAATTATGTATTCATTGCTGGACAAAGACTAC
AACAATATCCCATGTCacgacca
Run BLAST on NCBI

transcript from alignment at sc0000174:87796..96031+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013824 ID=TCONS_00013824|Name=TCONS_00013824|organism=Clytia hemisphaerica|type=transcript|length=8236bp|location=Sequence derived from alignment at sc0000174:87796..96031+ (Clytia hemisphaerica)
ATGCCCGGCTTCGGATTAGCCCGGAGTACGGCTCGGGATACTCTATTTTT
CAACTCCACCGTAGATGCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAG
CTCATTATGGAAAAAAGAAGTCAGATCTGGTCAGATGACCTGATCCTGAT
GACAGTGAGGACAGGCTGGAAAGTTTTGACTATTTAATCACCAGTTTATC
TTATGGCATGATGTTAAACATGAATCATCAAAGatatcttcttcttctta
tCACTAATCTTTATATTGCTCATGGAAGAATCCTCGAAAATGGCTACCAA
GAATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTG
GTGATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGGTATTtaatttt
gcctttttttcatttattttgggATAGCTTTGAGATTCCACAGGCTTTTT
AAAGCCTTactaaggcggcaatcacaaatatcttcgtttcgcgtcgtCGC
CCCCCGACCGACTTTGAAAATTGAGtaaattgagtcggtgagttggtaaa
tttgtcggaatttttctgtcaatgacctttccttcgttcaaaaattttat
tattgccaattttttgcgagcgatttctagcgcatttgcAGCATTTTGAC
TTGTGCTcctgtttatcattacatgtgcCATACGACCCACGGtgcacggc
atggcccgaacatgttcgggcctgcccggaccatgctcgggccacaaaaa
agtattattaacattttgttcggaccatgttcgggcctgttcggaccatg
ctcgggccacaaaaaagtattattaacattttgttcggaccatgttcggg
ccatgtattatttacaattgatacggatttgctcgggccatgttcgggcc
atatATAACCACAACTTCAATCCCTCGATTTCACTTCCCTATCCGCCAGA
TTTACCGCAGGTTTAGTGAAGTAGTTTTTAACATTAAAATGAATAAAGTG
CGactgttaaatcttttttatgaaaacatAAGCTATACGAACAACAGGCT
TTGGTAACCAAAGTGTCAAAAAAGCAGGTTATGGACGTCCCCGTAAAGTT
CTACTCTAAAACCCTCAAACAATTTGTGTTTCTaaagaattttttgtaaa
tataatAAGTACTATTATAAAGGCTCCCCGCCCCAGCGGTAAGTCTGATC
ACAACATCGCgcaaattgttttctttaatcgCGATTACACAAATCAACAA
CAAAATGGATAATCACgtatccctttgaaaaagttttaaaatcacGCCTC
ACAGCTCAAAAACCTTTCAAACCACGACCTTTGATCACGCAATCACAAAA
ACCGCTTAAAGGGCCTCATTAGAATTTAAGGAAATTTCCGTTATCAATTG
AAAGTTTTAAGCAAATGTGAACGCAATTTCCCCGCAATCATTATTATACC
AATTATCTATTCTCTGTCtagggaacgggataaagaataaaaagaagacc
atattatgtaagattcaaatcattttttttaataattttcctaacttaat
tggaaaatagatgattaacttttatatttgaacaatatatatttgaataa
agatgaagatttttaaatttgtttgctaaaataaggaatttaaaatataa
atattgggccttgaaattacacgcgcgatcgtagtaagttttcgaaaatc
tggcccgaacatggtccgaaactgcgcggACCACGCGtgggccattttta
aaaagcattaatcaagaggcccgaacatgttcaggccatgccgtgggtcg
ttgtgccattttggggtcggaggtcacagtgttcttcaaaggtcataatt
ttaaaccacccattacacgcGATTGTTTTGGcagctggctggctggcagt
tttcTCCAAGAATGCACTCTAAAAAcggatggaaaaatggaaacccgaaa
atttttacgaccgactgaccgaccgactcactttttagacccaacgagga
cgcccaatgaagatatttgtgattgccgcctaagtTGAAGTTCCTTACCA
AAGGCTGAAGAAGGGCCGTTCATAAAAAATTGGTTGGTTCCCGTTGGTTC
CCGTCACCCGACGATTTGAACTGAAGAATTAGAGTCTGAGAGTCGGAAAC
CACTTTTCCTGACAGCTGAAACTCCACCATCACCCTCCATGTTTTCTCTT
TTGAGAGAAAGAGCAAACGCTAATCTTgtccaaaaaaacaattcaaaacc
CATTAATTCCGtttttccccaattttcaaGTCCGATTTTACATTGCGGAC
CATAtggaagcatcaaaacaaaccagcgGAGCTTTTGTGAAGTGAAAAAG
AGGCTTAGGGCAATCAAACGTCCCTTTACCACCCTTTTCTTCGGACTGTT
TCgttcaaacagaaaatattttttgcccGACCGACCCACTTTTTGATGGt
tgaaatgacgggaaccaaggGATTTTTTACGAACGGCCAAGACAGTCTAG
ACTTAAAACTCCCTATCAGGACAGGCAAATTTCCAGGTTTTGAGCTGCCA
CCATTTTTATTTCAACGATTGAGTTTGACTTCAGTTCGAAGAGCAAAATA
ATCAACCCAGGTTCTGTTTAATTAGTTGGAAACtattaccgtaacttggt
ctaatgtcgacacccctcctctaattctgacaccctttttatcagctgaa
atttatagaaaggtcgaaactgtttttctttgtttattgGTCAGAGagaa
ataatcctttttcaatcagtgattcaagctttcatattattcctttctct
aaagaagggtgtcggaattagaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNACGTTCTAGGAACGCTATGGAACGTTCGTGAACGTTCAGGAACGTCT
CAAGAACGCTCCGTTTTAtttgtacttcaaatcgcttgtgATGACACATT
TTGTCaaaatccttttcattggataaataccactaaagtATACAAGagaa
gtaaacataaatttatcacCCGCGAGCACAGCTCAGCTAAGCGcaccttt
cttaaaaattcactatCTAAGAATTGGaacgggcaaagattaccgcgcgg
gctgatagcggacaaaggtagatattttcagttataatccaaggtagagc
AAACTAAatatagaaagggggtattttttagtgctatacgatgatcggta
ttttttttgaattctatgtttagatttttctacccagccctgttgctatg
tacgcgcgctctgttgctaagacctttgcttgttGAAATTCatgtgcgtt
tggtttgggaacgcgaaacacgaatgcgaactacccatgtctaaactttt
caatatatctccagaactaacagagtttttaaaattctgtaaaaagttcc
aagttcctgaatagttttactatgttctgtgaaagaatcataaccatcag
tcaaatactcgttcatctatttaagattgaagacaaaaatttgtgaagaa
aaataaaccttgagcacaaaaaatgcttttttaatcaCTTTTTTCCACCA
AAGAACAAATAATNGATGAGCAagggccacccctactgaaaatttcagat
caaaacaaacaaggaattattCCTGTAACTCTaggaaattggaaaaagct
ggtttttgactgtttctgatccttaagtgctattttttggtataaaagct
atgcaatttatgtttggatttctagaaagcttacccattcattgtcaata
tattttttatttgacagtaatctcttcatggaataaaaagatcttgtaga
gtaatttttcaaattttttttgccaaaatcaattttcgcatttcgcaatt
ttaccctacgcaaacgcacgtgaattggaagtgaaaccaaaataatttag
cccACACTGCCATTCGCATAACGCATCAATAAAAGTGAAAGGAGGTCCTG
ACTGATCTGGCCTGTCAGTTTAAGCTTAAtttcctatatcaggattagaa
acttaattttttgattCTGAGACCTTTTCGATGGTAATGTTTGAAAGCCA
TAATTTAACTTGTTTGTTCAATAAGAAGGCACTATACTAATGATGTAAAG
TAGCTATTTGACAGGTATAATTTAGCTAATAGTATAACTTGTGGATTGAC
ctttttgaaattaaacatacatttgtaaaaatatttgttttttatcttca
ttttattCTAAATCTAGGTGTAGGAGGCTTTATTTTGATCTGTCGTTAAA
TCAATTAACTTTTTAGAATGCATGGACAAAGgtgtattttcaatttaatt
tgactttGGCCCCTTTAAAGCTTAGGCATTTTTATTATGAAATACTTTAA
TAAATAGATGgtctttttaaatttaaagaaNTTTTGATCTGTCGTTAAAT
CAATTAACTTTTTAGAATGCATGGACAAAGgtgtattttcaatttaattt
gactttGGCCCCTTTAAAGCTTAGGCATTTTTATTATGAAATACTTTAAT
AAATAGATGGTCTTAAATTTAAAGATAGTTGCTTTTTATCAAAGCTCCAG
TATTGAGCCTTTTTTATTTGTAACAAGAGACccaaagattttaaataaac
ttaaaaaatcaGTGTTTTGATAGAAAAGTGCTTTGAAAATCTTTGGGTTC
GTTAGATAGATTGTTGTTTGTCAAATGTTTGATGGACAAAATTCAATTAA
TTCTTGaagaatcttataaaaaatatcagtCTTTTGACCATAAAGTCTTT
TCACCATTTttaccattcaaaaagtacgtagaCTCTGAGGAGGGGGGGAG
TGGGTCCTTtgaaaagcctaaaaaagcgTACGTGGGGAGGGGGTCAATCA
AGAAAATGTACCTACGCTTTgcaattttttccaaactgttttCCCCAGTT
TTTTCTAACTTTCtatttgaaaagtcaaaatattataaaCCTTTTAAACC
CATCTTACTTGTGTTATCCATATGTCACCCTATTATAATCTTTAAGTTTT
TTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gggggggggggggggtgattGGAAAAGCGTACAAGGGTGGAGGGGTTGGT
CGAATTTTGCTTACTTTTGAGCGTATGTACTTTTGAATGGCCCCTTACCT
TATTCACAGCCCTCTCTCGAAATAGTCTCAGTATTTTGATCAGCCTTTAA
ATTAACCATATACACTTCCATACTTTTACTGCACTGCTACTGTTGCAAAT
TTTAAGGGTATGTTCAGCTCAAATATGGAAAGTTTTGTCATAATGAAATC
TCTATTCATCTTTTTGTAGTCGTTCAACTTAACAAAATGGATGTATGAAG
ATTCTCTTATCACATACACCATGCATTGCAGTCCAGCAGGAGAGAAGAAA
CATTTTTCTGTCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCCCAG
AATTATGTATTCATTGGTAAGTATATAAAGTCAATGTcagatttatttat
ttgtttctttattATTCAAAAGAAAGGAAGAGAAGTGAGCTTCCATGGTC
ttacaatatttttttcgttttaCTGATTTAATAAACAACAAGTTTTTGAT
TCTACACATTACTGTCTtgaattttttagaaacttGACCAGTGGAGAGGA
CTTAATTTAAAAGGCTGAGATCTAATGAAgtattcaaatcattctttcaa
aaggttcttgtataaagtatattcattttttattttattctttttcagCT
GGACAAAGACTACAACAATATCCCATGTCacgacca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007727XLOC_007727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013824-exon-sc0000174-1491911889:87796..88183TCONS_00013824-exon-sc0000174-1491911889:87796..88183Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1510915933:87796..88183TCONS_00013824-exon-sc0000174-1510915933:87796..88183Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1575043694:87796..88183TCONS_00013824-exon-sc0000174-1575043694:87796..88183Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1491911889:95565..95711TCONS_00013824-exon-sc0000174-1491911889:95565..95711Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1510915933:95565..95711TCONS_00013824-exon-sc0000174-1510915933:95565..95711Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1575043694:95565..95711TCONS_00013824-exon-sc0000174-1575043694:95565..95711Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1491911889:95994..96031TCONS_00013824-exon-sc0000174-1491911889:95994..96031Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1510915933:95994..96031TCONS_00013824-exon-sc0000174-1510915933:95994..96031Clytia hemisphaericaexon
TCONS_00013824-exon-sc0000174-1575043694:95994..96031TCONS_00013824-exon-sc0000174-1575043694:95994..96031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:87796..96031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.576475	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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