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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013776 ID=TCONS_00013776|Name=TCONS_00013776|organism=Clytia hemisphaerica|type=transcript|length=3110bpRun BLAST on NCBI protein sequence of TCONS_00013776-protein >TCONS_00013776-protein ID=TCONS_00013776-protein|Name=TCONS_00013776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MVTVLNTSTLAEVFHGFPHLDFNFQNTTTVFSPTNIAYQQALMFNGIYLFRun BLAST on NCBI transcript from alignment at sc0000173:293013..313715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013776 ID=TCONS_00013776|Name=TCONS_00013776|organism=Clytia hemisphaerica|type=transcript|length=20703bp|location=Sequence derived from alignment at sc0000173:293013..313715+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000173:293013..313715+ >TCONS_00013776 ID=TCONS_00013776|Name=TCONS_00013776|organism=Clytia hemisphaerica|type=CDS|length=22680bp|location=Sequence derived from alignment at sc0000173:293013..313715+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013776 vs. Swiss-Prot (Human)
Match: TTYH3 (Protein tweety homolog 3 OS=Homo sapiens GN=TTYH3 PE=1 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 1.110e-20 Identity = 123/546 (22.53%), Postives = 221/546 (40.48%), Query Frame = 3
Query: 213 VFHGFPHLDFNFQNTTTVFSPTNIAYQQALMFNGIYLFFMTTCLFLIFGFYFLVASCYFYCNCNTQILKPRPSKSKCLRILIGIFAVLSCAA-LGLSFYGNNKAKDGIEDATEAMQSIYNQFDLYKFKNNDVIQESIRNAKQQVLELQQKV-----TFNHSQE--LESIEKHLLAASIDLK----LSGNLLEVVG------------VDLQTYAEECTKYDDLRWWXXXXXXXXXXXXXXXXXYATYTNRKCALIGLTVMAVFSLFLNMXXXXXXXXXXXGAADICLQPKQAYLQYVQD-NASAQALIEYYMDCSV-ADNELFKDFNKTSDELSEAYMLVQAFQLLPIVRDLPEVKLLLKFTREAIG----ELNHLIDIVHCKTIHDDYQNLLQAVCNTTIEGFGLMILSCFIIVVFLIAIMLCITPLWK-------------ATAPLKPILKKYGVHIITESYQGPPGYGVAGSESFHGSSSFDASYKSIDDPEDFEHL--------------PLINKRNQPHSYRAVHGSTEFLSVEEERRDKT 1679
+ H PH D +++ T++ F P + YQQAL+ G L FY F+ C + + C I A L C+A + + FYGN + DGI AT S+R+A + V +Q +V NH+ E L+++E+ L L+ L G L ++G V L+ AE+ YD RW + L +++ L++L + K L+G+ ++ V +L ++ + + +S+G++D C+ P + V++ + + +++YY+ CS A N + + + L E +V L + + P K L +E + L HL +V C+++H DY L C +EG + L F+ + +I+ + W+ A P + Y VH+ P GS S+ +S A+ ++ + E++ PLI + + P SY + ++L+ + R D +
Sbjct: 14 LLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLLFY------SFWLCCRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY----------------------SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLGYTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACSPRAANPFQQKLSGSHKALVEMQDVVAEL-LRTVPWEQPATKDPLLRVQEVLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHM--------PSLYSCGS-SYGSETSIPAAAHTVSNAPVTEYMSQNANFQNPRCENTPLIGRESPPPSYTSSM-RAKYLATSQPRPDSS 520 The following BLAST results are available for this feature:
BLAST of TCONS_00013776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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