TCONS_00013683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013683
Unique NameTCONS_00013683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013683 ID=TCONS_00013683|Name=TCONS_00013683|organism=Clytia hemisphaerica|type=transcript|length=1925bp
AAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCAACG
GTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAAGCT
GCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatttca
aaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGGCAC
AAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTGAAG
CAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAAGCA
TGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatgatG
CCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTCATG
AAACAAGAACAACCGAATCATGGTATCGATGCTATATTTGCTGGTACCGA
CATTATTATCAATTTCTGGCTATCGTGCTCTGTTGCAGATATCAGTGTTT
TGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGT
TGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATATCAGTGTTTT
GAGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGTT
GCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATATCAGTGTTTTG
AGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGTTG
CTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATATCAGTGTTTTGA
GATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGTTGC
TCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATATCAGTGTTTTGAG
ATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGTTGCT
CATATCAGTTTTTGGTATCGTGCTCTGTTGCAATACCTTTTTAAAGATAT
CGTTTGCGTGAATGCAGATATCGTTTGACAATTATCATGGTATCACTGCT
CTGTTGCATATGCCATTTCCAGAGAACAACCGAATCATGGTATCGATGCT
ATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTGT
TGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGT
GGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCAAT
ACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTA
TCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGT
TTTCTTACATtatttgttttatcattttattcGGAGGAGATTACGCATCC
CTTCTCGAGCATAGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTA
AATAAAATCGAAAAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACA
CCACTTCGGACAACCATATTATATATATCCTACACGACTGCAAGGGAGTC
TTTTGAAGAGCATTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcg
tcattggattggtcgttaactattcagACAAAGCTCTTATTACatgtttt
ctaaagaacgcgtcatctttattgttttgaataactaattatgTAAACAT
CATATAAAAACCTCAACCCAATTGCATTATCATCAAGAACAGTCATTCTA
ACAGgttcaaaattttccaaccgATTAGGAATataaacaaagaatttttt
gcatccataccttttctttttttcccctCGTGTTTTTCATTGCAAGATGT
ATccaataaacaaacaaattcatgttttttattatttctacTTTCTATGT
ATTATTCTTAAGCTTTGAGGAGANN
Run BLAST on NCBI

transcript from alignment at sc0000171:357276..360935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013683 ID=TCONS_00013683|Name=TCONS_00013683|organism=Clytia hemisphaerica|type=transcript|length=3660bp|location=Sequence derived from alignment at sc0000171:357276..360935+ (Clytia hemisphaerica)
AAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCAACG
GTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAAGCT
GCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatttca
aaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGGCAC
AAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTGAAG
CAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAAGCA
TGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatgatG
CCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTCATG
AAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGCTTGC
TGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTGTTGA
CAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttgaaaga
gGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAACAGA
GAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACAATTG
CAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCACAAG
TCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAACACA
GCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAGTGAT
TAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatattttttc
taattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacattttt
ttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACATCAG
TTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATTTTCC
TATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAATTTA
AATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACATTTCG
GGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAACAAA
CTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATAAAC
TTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAACAT
CTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCAATC
TGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTGTCCC
tgtttatatgtttttttttttactctgcTGAACGATTATTGGAAATGCTT
ATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgttctt
ttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttctcatt
ttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTATATT
TGCTGGTACCGACATTATTATCAATTTCTGGCTATCGTGCTCTGTTGCAG
ATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATA
TGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGA
TATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATAT
GAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGAT
ATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATG
AATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATA
TCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGA
ATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATAT
CAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAA
TGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAATACCT
TTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTATCAT
GGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGTTTTC
TTACATTATGTTTTATCAATTTATTCGGAGGAGATTACGCATCCCTTCTT
GAGCAAAGGATAGAAGCAATAAAAGGTCAGAAACTATGATAAGTTCCAAT
GGAAAGGAATTCAAGCCTTTGGTTAAGCAATTTCTTGTGTTAGATCCTTA
TTTTATTAACAATTCTCACATTAGTTATAATTTTTGATGGTTTTCGCTAA
TTCTTACTCGTCANGAAGCcattgtcaatcattttcttgtGTTCTTATTT
TATTAACAGTTCTAACTAGTTGTAattttttatggttttttgGCTAATTC
TTACTCGTTAGCGCTACATCACATCCGAAGACGAATAATACATTTTTTCA
ATGCATACTGCCCGTTTATAATTTTCTACTCTACTGAACAACTATTGGAA
ATGCTTATTTCTTTGTTGTGTAATTGGCTCTAAAGGCAAGAGCatgtttg
ttcttttttttgatccaagtttttcatgatgcaatcttgtaatttgtttt
ctcattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGC
TATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTG
TTGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTG
TGGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCAA
TACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATT
ATCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAG
TTTTCTTACATNGATGCAGATATCGATTGGCGATTAATTAGTATCACTGC
TCTGTTGCATATGCCACTTACAGAGGTATGAGAGTTTTCTTACATtattt
gttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAGCATAGG
ATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAATAAAATCGAAAAG
AGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGGACAACC
ATATTATATATATCCTACACGACTGCAAGGGAGTCTTTTGAAGAGCATTT
ATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggattggtcg
ttaactattcagACAAAGCTCTTATTACatgttttctaaagaacgcgtca
tctttattgttttgaataactaattatgTAAACATCATATAAAAACCTCA
ACCCAATTGCATTATCATCAAGAACAGTCATTCTAACAGgttcaaaattt
tccaaccgATTAGGAATataaacaaagaattttttgcatccatacctttt
ctttttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaacaaac
aaattcatgttttttattatttctacTTTCTATGTATTATTCTTAAGCTT
TGAGGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007645XLOC_007645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013683-exon-sc0000171-1491911889:357276..357682TCONS_00013683-exon-sc0000171-1491911889:357276..357682Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1510915933:357276..357682TCONS_00013683-exon-sc0000171-1510915933:357276..357682Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1575043694:357276..357682TCONS_00013683-exon-sc0000171-1575043694:357276..357682Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1491911889:358795..359461TCONS_00013683-exon-sc0000171-1491911889:358795..359461Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1510915933:358795..359461TCONS_00013683-exon-sc0000171-1510915933:358795..359461Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1575043694:358795..359461TCONS_00013683-exon-sc0000171-1575043694:358795..359461Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1491911889:360001..360284TCONS_00013683-exon-sc0000171-1491911889:360001..360284Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1510915933:360001..360284TCONS_00013683-exon-sc0000171-1510915933:360001..360284Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1575043694:360001..360284TCONS_00013683-exon-sc0000171-1575043694:360001..360284Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1491911889:360369..360935TCONS_00013683-exon-sc0000171-1491911889:360369..360935Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1510915933:360369..360935TCONS_00013683-exon-sc0000171-1510915933:360369..360935Clytia hemisphaericaexon
TCONS_00013683-exon-sc0000171-1575043694:360369..360935TCONS_00013683-exon-sc0000171-1575043694:360369..360935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:357276..360935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.258754	0	0.385805	0.589806	0.575142	0.784328	0.0845878	0	0.125801	0.149294	0	0	0.12815	0.27965	0	0	0	0	0	0	0	0	0.406855	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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