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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013681 ID=TCONS_00013681|Name=TCONS_00013681|organism=Clytia hemisphaerica|type=transcript|length=2373bp
agcAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCA
ACGGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAA
GCTGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatt
tcaaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGG
CACAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTG
AAGCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAA
GCATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatg
atGCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTC
ATGAAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGCT
TGCTGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTGT
TGACAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttgaa
agagGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAAC
AGAGAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACAA
TTGCAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCAC
AAGTCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAAC
ACAGCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAGT
GATTAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatatttt
ttctaattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacatt
tttttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACAT
CAGTTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATTT
TCCTATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAAT
TTAAATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACATT
TCGGGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAAC
AAACTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATA
AACTTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAA
CATCTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCA
ATCTGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTGT
CCCtgtttatatgtttttttttttactctgcTGAACGATTATTGGAAATG
CTTATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgtt
cttttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttctc
attttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTAT
ATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTGTTG
CAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGG
ATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCAATAC
CTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTATC
ATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGTTT
TCTTACATtatttgttttatcattttattcGGAGGAGATTACGCATCCCT
TCTCGAGCATAGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAA
TAAAATCGAAAAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACACC
ACTTCGGACAACCATATTATATATATCCTACACGACTGCAAGGGAGTCTT
TTGAAGAGCATTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtc
attggattggtcgttaactattcagACAAAGCTCTTATTACatgttttct
aaagaacgcgtcatctttattgttttgaataactaattatgTAAACATCA
TATAAAAACCTCAACCCAATTGCATTATCATCAAGAACAGTCATTCTAAC
AGgttcaaaattttccaaccgATTAGGAATataaacaaagaattttttgc
atccataccttttctttttttcccctCGTGTTTTTCATTGCAAGATGTAT
ccaataaacaaacaaattcatgttttttattatttctacTTTCTATGTAT
TATTCTTAAGCTTTGAGGAGANN Run BLAST on NCBI transcript from alignment at sc0000171:357273..360935+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013681 ID=TCONS_00013681|Name=TCONS_00013681|organism=Clytia hemisphaerica|type=transcript|length=3663bp|location=Sequence derived from alignment at sc0000171:357273..360935+ (Clytia hemisphaerica)
agcAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCA
ACGGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAA
GCTGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatt
tcaaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGG
CACAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTG
AAGCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAA
GCATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatg
atGCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTC
ATGAAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGCT
TGCTGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTGT
TGACAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttgaa
agagGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAAC
AGAGAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACAA
TTGCAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCAC
AAGTCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAAC
ACAGCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAGT
GATTAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatatttt
ttctaattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacatt
tttttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACAT
CAGTTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATTT
TCCTATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAAT
TTAAATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACATT
TCGGGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAAC
AAACTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATA
AACTTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAA
CATCTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCA
ATCTGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTGT
CCCtgtttatatgtttttttttttactctgcTGAACGATTATTGGAAATG
CTTATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgtt
cttttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttctc
attttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTAT
ATTTGCTGGTACCGACATTATTATCAATTTCTGGCTATCGTGCTCTGTTG
CAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGG
ATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGC
AGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGA
TATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCA
GATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGAT
ATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAG
ATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATA
TGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGA
TATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATAT
GAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAATA
CCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTAT
CATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGTT
TTCTTACATTATGTTTTATCAATTTATTCGGAGGAGATTACGCATCCCTT
CTTGAGCAAAGGATAGAAGCAATAAAAGGTCAGAAACTATGATAAGTTCC
AATGGAAAGGAATTCAAGCCTTTGGTTAAGCAATTTCTTGTGTTAGATCC
TTATTTTATTAACAATTCTCACATTAGTTATAATTTTTGATGGTTTTCGC
TAATTCTTACTCGTCANGAAGCcattgtcaatcattttcttgtGTTCTTA
TTTTATTAACAGTTCTAACTAGTTGTAattttttatggttttttgGCTAA
TTCTTACTCGTTAGCGCTACATCACATCCGAAGACGAATAATACATTTTT
TCAATGCATACTGCCCGTTTATAATTTTCTACTCTACTGAACAACTATTG
GAAATGCTTATTTCTTTGTTGTGTAATTGGCTCTAAAGGCAAGAGCatgt
ttgttcttttttttgatccaagtttttcatgatgcaatcttgtaatttgt
tttctcattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGA
TGCTATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGCT
CTGTTGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATAT
TTGTGGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTG
CAATACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACA
ATTATCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGG
GAGTTTTCTTACATNGATGCAGATATCGATTGGCGATTAATTAGTATCAC
TGCTCTGTTGCATATGCCACTTACAGAGGTATGAGAGTTTTCTTACATta
tttgttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAGCAT
AGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAATAAAATCGAA
AAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGGACA
ACCATATTATATATATCCTACACGACTGCAAGGGAGTCTTTTGAAGAGCA
TTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggattgg
tcgttaactattcagACAAAGCTCTTATTACatgttttctaaagaacgcg
tcatctttattgttttgaataactaattatgTAAACATCATATAAAAACC
TCAACCCAATTGCATTATCATCAAGAACAGTCATTCTAACAGgttcaaaa
ttttccaaccgATTAGGAATataaacaaagaattttttgcatccatacct
tttctttttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaaca
aacaaattcatgttttttattatttctacTTTCTATGTATTATTCTTAAG
CTTTGAGGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013681-exon-sc0000171-1491911889:357273..358838 | TCONS_00013681-exon-sc0000171-1491911889:357273..358838 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1510915933:357273..358838 | TCONS_00013681-exon-sc0000171-1510915933:357273..358838 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1575043694:357273..358838 | TCONS_00013681-exon-sc0000171-1575043694:357273..358838 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1491911889:360045..360284 | TCONS_00013681-exon-sc0000171-1491911889:360045..360284 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1510915933:360045..360284 | TCONS_00013681-exon-sc0000171-1510915933:360045..360284 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1575043694:360045..360284 | TCONS_00013681-exon-sc0000171-1575043694:360045..360284 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1491911889:360369..360935 | TCONS_00013681-exon-sc0000171-1491911889:360369..360935 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1510915933:360369..360935 | TCONS_00013681-exon-sc0000171-1510915933:360369..360935 | Clytia hemisphaerica | exon |
| TCONS_00013681-exon-sc0000171-1575043694:360369..360935 | TCONS_00013681-exon-sc0000171-1575043694:360369..360935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:357273..360935 + |
Blast
The following BLAST results are available for this feature:
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