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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013643 ID=TCONS_00013643|Name=TCONS_00013643|organism=Clytia hemisphaerica|type=transcript|length=2658bp
ATTAAAGTAAAGTGCTTTAAAAAGTTAGTCcttgaaatagaaaaatttga
tttttttaagttttgaattttgatcttAACCGTAGAGTTAAGAGACATTT
CCAGATCTATATAAAAAGATGTCAAAGACAAAATTAATATCCACCCCCTT
GACTCCTTTTGCTTGACAAAAACTAGACAAAATATGACATAAAAGTATTA
CATGcggttttacttttttctttcaatgcATGTTGTTTTTATATTCTAAT
GAGCTCTTACGGAAAATTGGCACTAAAGTAAACAATTCTCCTACCACCCA
AGTAATCGTGGAATCATAagatgcccggggggggggggggggccNttact
tttttctttcaatgaaTGTTGTTTTTATATTCTAATGAGCTCTTACAGAA
AATTGGGACTAAAGTAAACAATTCTCCTACCACCCAAGGAATCGTGGAAT
CATAagatgcccgggggggggggttgcaCTCAAGGCGACTTATCGTAGGA
TTAGCCCTAAAGGGGATGATTTTCAGGCTTCctaaaaaaacaccaaagta
aCCTCTGTAAAAGTCAAAATGAAGTCAAAGGATGTAAAAAGtattaaaaa
cgtttttttgggCAAAACTTTGAAAGATCTGACCATTTTTGCCAATGAGG
ACGAAAGTCTTCAAGAAAATGCATCGAGTTATAAGCTTTGAAATGGGGCC
TGATTAGTTTCAAAggtctttttcagaaaatgaattAACTATTACAAAGA
ATACGTGATATGTGACGATTTAGAATAAATTATCTTAAaattccgagtta
aaaaagatttataacTCGGCATTACGAGTTAATGAGGCATTAAGAGAATG
ATTGACCATTTTGCAATGTATATAAATCGTTTAACCACTTAAGATAAGTT
ATTCCGATTTTACGAGTTAAAAGAGTTATAGCTCGGCATTATATTTTCGG
CCATACTATTTAACCAATCAACAAAGCTTATTGTCGGAGTCAAAATGAAG
TCAAAGGATGTAAAAAGtattaaaaacgttttttttgggcaaaactttga
aaaatctgaTCATTTTTTCCCAATGAGGACAAAAGTCAAGGTAGGATAGA
TTTTGCgtccaaatttaatttttgatatGCGGTCcatacatttttttaaa
cttttgatgTTTCTGGTCTACGGTCTTGATGATCCAATATAAAAATGCAG
CGCACGCACACTTTGttgatattttcatattttacccAACAATCAACAAC
CAGGGACAAACACAGCTATTGATATTTGGAAATTGTTCCGTTTCATATAT
TAAAATAATGTGGTAGAAtacatttagaataaaattatgtataaaattga
aaaaatatatttacaaaaattaggCAATTTCTCTATGGAAATTTTCTTTC
TCCTCCCCTAAAATCCCAGATTGCCAAATGCTGATATAGGGTAataaact
atggtcaaaattagttataaatatgaaattataaaaaaaagtttatcgCA
AGAGATTCTTTAGTGAATATATTGCAAGGATTTCTAGAATCAACTTGAAT
TTATATGTACCATATACCTAtcgaccaatgaagtataagcccaaagcctg
gtttttacataaatggCAGATTGAAAGTAGAATTTAcggctaaattttga
aaaaaaatatcactcgaaaacaaaagaattgctagattcagTCCGTCGTC
AGAAATCTGTCGTCagaaatacggcgcatattttaagccTTCATCTTTGC
CTgaaaaaggttagagattcgattctagcccttcgggcttatacttcatt
gatatCAACCCTTAACGGCGCGGTCGGCTTTGGAGGGGTCTGGTGATGAA
TTTACAAGAAAATGACATCACAATTCTTTGTTTTAAGAGaatgtcaatgc
aatgacttcagacattttgacgtcattccttCCTGGTAATCTCGAACCCA
GTTTCCACACGCTATAAAGGTTGAAAAGTTTATTAAAGTGGTCAAAATTC
ATTAAGTGCAACTACCACATTCACAACTAGAGGCCATTTGAACTTTATAA
ACAGGTGGAGTCTGTCCGCCATTATTGCATACAAAAGGTAAAGTTTTCTC
GATTGTAGCCTTTTGTTTGCATGATTGACAAGCTGGTTTATTCGTTTGTA
AATTCAGTTTAGGACTACAGTGTCCAAGACAATAGGTATATTCGAAAACA
AGTTGACCACAACCTTGCCGTGAAACAGTCATGTTCGTTTTGTGGATGCT
ACATTTAGAGTTATACGAGTTTGCTTCAAGAGGTGCGATATCGGGAATAA
ATGGTTTCAATATTTCAACTTTAATACCTCCATTTTCATGGAGTCCTTTC
TGTGGGAAAATGTTCGGCGTGTCGGCGCCGGTGCCGGGTTGGTTAAATTG
AagtgaactttttgaatttttgattttttttatggtTGCGGTGGGGACAT
ACATGGCAGTTGAAAGTGTGATGAAACATAGTCCAATGAAATATGTCcaa
ttcttcatttttgtttatatcCTTTTTCTATCTAAAACGAAATAGATACA
TGTAAAAGTAAAGTGGGAAGTTACTGAAGATAAATTGGAATTGGAATGTA
TGAGTTATGCTGTCATTGTCACAGGCGAGTTGATCCCTGGGTTCGTCGTA
CGTATAAT Run BLAST on NCBI protein sequence of TCONS_00013643-protein >TCONS_00013643-protein ID=TCONS_00013643-protein|Name=TCONS_00013643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MKNWTYFIGLCFITLSTAMYVPTATIKKIKNSKSSLQFNQPGTGADTPNI
FPQKGLHENGGIKVEILKPFIPDIAPLEANSYNSKCSIHKTNMTVSRQGC
GQLVFEYTYCLGHCSPKLNLQTNKPACQSCKQKATIEKTLPFVCNNGGQT
PPVYKVQMASSCECGSCT Run BLAST on NCBI transcript from alignment at sc0000170:384957..387614 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013643 ID=TCONS_00013643|Name=TCONS_00013643|organism=Clytia hemisphaerica|type=transcript|length=2658bp|location=Sequence derived from alignment at sc0000170:384957..387614 (Clytia hemisphaerica)
ATTATACGTACGACGAACCCAGGGATCAACTCGCCTGTGACAATGACAGC
ATAACTCATACATTCCAATTCCAATTTATCTTCAGTAACTTCCCACTTTA
CTTTTACATGTATCTATTTCGTTTTAGATAGAAAAAGgatataaacaaaa
atgaagaattgGACATATTTCATTGGACTATGTTTCATCACACTTTCAAC
TGCCATGTATGTCCCCACCGCAaccataaaaaaaatcaaaaattcaaaaa
gttcactTCAATTTAACCAACCCGGCACCGGCGCCGACACGCCGAACATT
TTCCCACAGAAAGGACTCCATGAAAATGGAGGTATTAAAGTTGAAATATT
GAAACCATTTATTCCCGATATCGCACCTCTTGAAGCAAACTCGTATAACT
CTAAATGTAGCATCCACAAAACGAACATGACTGTTTCACGGCAAGGTTGT
GGTCAACTTGTTTTCGAATATACCTATTGTCTTGGACACTGTAGTCCTAA
ACTGAATTTACAAACGAATAAACCAGCTTGTCAATCATGCAAACAAAAGG
CTACAATCGAGAAAACTTTACCTTTTGTATGCAATAATGGCGGACAGACT
CCACCTGTTTATAAAGTTCAAATGGCCTCTAGTTGTGAATGTGGTAGTTG
CACTTAATGAATTTTGACCACTTTAATAAACTTTTCAACCTTTATAGCGT
GTGGAAACTGGGTTCGAGATTACCAGGaaggaatgacgtcaaaatgtctg
aagtcattgcattgacattCTCTTAAAACAAAGAATTGTGATGTCATTTT
CTTGTAAATTCATCACCAGACCCCTCCAAAGCCGACCGCGCCGTTAAGGG
TTGatatcaatgaagtataagcccgaagggctagaatcgaatctctaacc
tttttcAGGCAAAGATGAAggcttaaaatatgcgccgtatttctGACGAC
AGATTTCTGACGACGGActgaatctagcaattcttttgttttcgagtgat
attttttttcaaaatttagccgTAAATTCTACTTTCAATCTGccatttat
gtaaaaaccaggctttgggcttatacttcattggtcgaTAGGTATATGGT
ACATATAAATTCAAGTTGATTCTAGAAATCCTTGCAATATATTCACTAAA
GAATCTCTTGcgataaacttttttttataatttcatatttataactaatt
ttgaccatagtttatTACCCTATATCAGCATTTGGCAATCTGGGATTTTA
GGGGAGGAGAAAGAAAATTTCCATAGAGAAATTGcctaatttttgtaaat
atattttttcaattttatacataattttattctaaatgtaTTCTACCACA
TTATTTTAATATATGAAACGGAACAATTTCCAAATATCAATAGCTGTGTT
TGTCCCTGGTTGTTGATTGTTgggtaaaatatgaaaatatcaaCAAAGTG
TGCGTGCGCTGCATTTTTATATTGGATCATCAAGACCGTAGACCAGAAAc
atcaaaagtttaaaaaaatgtatgGACCGCatatcaaaaattaaatttgg
acGCAAAATCTATCCTACCTTGACTTTTGTCCTCATTGGGAAAAAATGAt
cagatttttcaaagttttgcccaaaaaaaacgtttttaataCTTTTTACA
TCCTTTGACTTCATTTTGACTCCGACAATAAGCTTTGTTGATTGGTTAAA
TAGTATGGCCGAAAATATAATGCCGAGCTATAACTCTTTTAACTCGTAAA
ATCGGAATAACTTATCTTAAGTGGTTAAACGATTTATATACATTGCAAAA
TGGTCAATCATTCTCTTAATGCCTCATTAACTCGTAATGCCGAgttataa
atcttttttaactcggaattTTAAGATAATTTATTCTAAATCGTCACATA
TCACGTATTCTTTGTAATAGTTaattcattttctgaaaaagaccTTTGAA
ACTAATCAGGCCCCATTTCAAAGCTTATAACTCGATGCATTTTCTTGAAG
ACTTTCGTCCTCATTGGCAAAAATGGTCAGATCTTTCAAAGTTTTGccca
aaaaaacgtttttaataCTTTTTACATCCTTTGACTTCATTTTGACTTTT
ACAGAGGttactttggtgtttttttagGAAGCCTGAAAATCATCCCCTTT
AGGGCTAATCCTACGATAAGTCGCCTTGAGtgcaacccccccccccgggc
atctTATGATTCCACGATTCCTTGGGTGGTAGGAGAATTGTTTACTTTAG
TCCCAATTTTCTGTAAGAGCTCATTAGAATATAAAAACAACAttcattga
aagaaaaaagtaaNggccccccccccccccccgggcatctTATGATTCCA
CGATTACTTGGGTGGTAGGAGAATTGTTTACTTTAGTGCCAATTTTCCGT
AAGAGCTCATTAGAATATAAAAACAACATgcattgaaagaaaaaagtaaa
accgCATGTAATACTTTTATGTCATATTTTGTCTAGTTTTTGTCAAGCAA
AAGGAGTCAAGGGGGTGGATATTAATTTTGTCTTTGACATCTTTTTATAT
AGATCTGGAAATGTCTCTTAACTCTACGGTTaagatcaaaattcaaaact
taaaaaaatcaaatttttctatttcaagGACTAACTTTTTAAAGCACTTT
ACTTTAAT Coding sequence (CDS) from alignment at sc0000170:384957..387614 >TCONS_00013643 ID=TCONS_00013643|Name=TCONS_00013643|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000170:384957..387614 (Clytia hemisphaerica)
atgaagaattgGACATATTTCATTGGACTATGTTTCATCACACTTTCAAC
TGCCATGTATGTCCCCACCGCAaccataaaaaaaatcaaaaattcaaaaa
gttcactTCAATTTAACCAACCCGGCACCGGCGCCGACACGCCGAACATT
TTCCCACAGAAAGGACTCCATGAAAATGGAGGTATTAAAGTTGAAATATT
GAAACCATTTATTCCCGATATCGCACCTCTTGAAGCAAACTCGTATAACT
CTAAATGTAGCATCCACAAAACGAACATGACTGTTTCACGGCAAGGTTGT
GGTCAACTTGTTTTCGAATATACCTATTGTCTTGGACACTGTAGTCCTAA
ACTGAATTTACAAACGAATAAACCAGCTTGTCAATCATGCAAACAAAAGG
CTACAATCGAGAAAACTTTACCTTTTGTATGCAATAATGGCGGACAGACT
CCACCTGTTTATAAAGTTCAAATGGCCTCTAGTTGTGAATGTGGTAGTTG
CACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013643-exon-sc0000170-1491911889:384957..387614 | TCONS_00013643-exon-sc0000170-1491911889:384957..387614 | Clytia hemisphaerica | exon |
| TCONS_00013643-exon-sc0000170-1510915933:384957..387614 | TCONS_00013643-exon-sc0000170-1510915933:384957..387614 | Clytia hemisphaerica | exon |
| TCONS_00013643-exon-sc0000170-1575043694:384957..387614 | TCONS_00013643-exon-sc0000170-1575043694:384957..387614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:384957..387614 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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