TCONS_00013619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013619
Unique NameTCONS_00013619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013619 ID=TCONS_00013619|Name=TCONS_00013619|organism=Clytia hemisphaerica|type=transcript|length=1534bp
ATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGATAGATAA
AGAATGTAATCATAATGATGGCCGATCCGAAGATTTCAATCGAACTAAGT
AACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTAGTGGGCATGT
GGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTCTGTTTGACTT
TTGGAGgaaaAGGCGACGTCGTGTGGGTGGAAACAATCGCTGATGACATT
GAAACTTACCACGGcaaagaagaaatttttatgTTCGAACATATCTTCTA
CGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAACAA
GTTACTCTTTTGTTTTCAGTGTACCAAATGGTATCCCAAGTTCTTATACT
GGAATAAAAATTGGATTTATTCGATATGAAATGGAAGCTCAAATCACTTT
AGCTTACAAATCAAATATCAAAGTCAAGCGAACCATACACATTCATGAAG
TGATTGACTGCAATCTTCCACGTTACCTTAGTGGTATTGGGATGAGTTGT
ACTGAAGATGTTGGCTTTTGTTGTTACAAATATGGCCCTATTCGCATGTC
AgCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAATATCCCAA
TAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCACAGAAGCGAGA
ATCAAACTCATCCAAACGGCGATCTATCGGGAACATCACGAACATCACAA
AGACGGACCGATAACAGTCCGAGATTACACCATTGCTAAATCGAAAGTAT
TATTCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGACCGCT
CCTGAAAATACATCTCCAACGAATTGGCGattgaaaatcatcaaagtaaG
ATATCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGAACCAT
GCATTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTAAGTCA
AAAgatataaatcaaaacaattggTTTTGACTGCTATTCGTCGAAACGAG
GTTACAGTGTAAGAATTCAGCCACAAAATTGGCCTTTTCTCTATCAAATT
GTTGGAAACATATTATAAAGttgaataatttaaatttaaaaaaagctgct
ttaggcgtacaagctttcgcgagcagaaactttcgcgattttcgcgaatt
ttggccctttacgcgaaagtaaatgtctttaaaaattctaggaagggcta
ttcgcgaaagtttaggctcgcgaaaaattcttgacaaaatagaaaacctg
taaacttcaaactttgaataaaatgtaacttttatggcactttttagcct
gctaaaagactaataagtcaaaggacaaatgtttcaagctaatccaagaa
gtattcgtccctctaagccattttttcatgtgaaaattctcaattttacg
tcttggttcgcgaaagtttatgctcgcaaaaaatatttttccgttaaatt
cgcgaaagtaaaagtcgtgaatttcgcgattttt
Run BLAST on NCBI

protein sequence of TCONS_00013619-protein

>TCONS_00013619-protein ID=TCONS_00013619-protein|Name=TCONS_00013619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MMADPKISIELSNEKQEIFYPGEKISGHVVIELDKPLETKNVCLTFGGKG
DVVWVETIADDIETYHGKEEIFMFEHIFYGQRKSSSRVVLPTGRTSYSFV
FSVPNGIPSSYTGIKIGFIRYEMEAQITLAYKSNIKVKRTIHIHEVIDCN
LPRYLSGIGMSCTEDVGFCCYKYGPIRMSALIPGRSCFCPGENIPIEMMI
ENNSSKLVTEARIKLIQTAIYREHHEHHKDGPITVRDYTIAKSKVLFKDS
TYLRYIGEGLTAPENTSPTNWRLKIIKVRYHVEVRIDLSWTTNEPCIEIP
IIIGTVPLGIKSKDINQNNWF
Run BLAST on NCBI

transcript from alignment at sc0000170:437395..442373-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013619 ID=TCONS_00013619|Name=TCONS_00013619|organism=Clytia hemisphaerica|type=transcript|length=4979bp|location=Sequence derived from alignment at sc0000170:437395..442373- (Clytia hemisphaerica)
ATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGGTATGTGA
TATTCGTTTTCGTTTTTGTTTATGTTTTTTTTTGTATTAGTTCCTCCGCG
GTTTCTTTAAAGCCAAATTCAAGTCTTCGTAATTCGATTCAATAATTATC
CATCCGTTCTCAGAAGCAGTTCTGATTGATTGAGGTTCAAAATTTAAGAC
AACGAGTTTTGCTTCTATTAGATATTGACGATGGCAACCCGAAGAGGAAA
GTTCATAACTTTTGAACCATATTCAGAGAATTGCCAATATGGACAAAATA
ATCAAACTCACACACGAGGATGTGTTGTTTGTTATAAATCTTACTTTTTT
CATATAATTTGTTCGTTCCTAGATAGATAAAGAATGTAATCATAATGATG
GCCGATCCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATCTT
TTATCCTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAAAC
CATTGGAGACAAAAAACGTCTGTTTGACTTTTGGAGGTTTGTTGTTCTAT
CCTGGTTGAGGTTAGGCTGCTTGCATTCACTAACGGATTCGTGCTCCTTA
TAGAGGATGCTTAATAAGCTATATTTCATTTGTCCAGAGATTTGCCGCCT
TTAGCTGATATACATTCTATTGAAAACGTTCGAAACGATCGTTTTTGCGC
GCACATCAATGCCAATCAAATCATTAACTTGCCAAGATTTTGTAAAATAC
ATCGAAATAAAAAAAAACCGAACCAGAAAGCGGCTGGTAGATTATTAAGC
AGACCTATACTACCTGGGGTTTTGTAGAGGTCTGCGATTTAGACTAAGTT
GAGGTCTCCGTACACGGAAAACCGTGAATTTTCTGCCCCTGAATTTTCAA
TCTTAGGCAAGTACATACTGTATTAAATTAACTAAACACCCCTCTCTCAC
AGCCCTGGTGGAAGTTTTTTGTCTGTTGGGATAGAAATTTCTATTGAAAT
CCTAATGGGGACAGAAATTATATTGTTCCAAGGGGGATGGTTTTGGAGTA
CAATTTTCAAACATTGAAATTAGACAGTCAACTTCCTAGCCTGGATATCC
AAGCTCAAAATTTTAGAAAAAATAAAATTTACCTCAATATACAAAGTTCT
AAAATTATAGAGCTTGGTCTCCCTAGAGAAAGAAAGTGCAAACCCATGTT
TCTGAAACTTTTCTAGTCAACCCAGGTCAGCGAAACAGAAATTAATAAAA
AAGCAGCCTTGCAAGATCTAAAACCATTTAAAACATCCAAAGATTACACC
AGAGTCCATAAACAAGTTTGCATGCATTATCATGACCAACCACGTTTTCT
TGAAAAATGAACTTGCCTCTGTTTTCTTCTGTTTCGTGTTTTCATGTAAA
AGAAAGCTGTATCTTTACTAGAAACTGGAGGACTATCCTATTTTTGTTTC
AGAATTGCTCCACGCCGTGTAGATTGGTCCGTACGGCTTTAGTGAAGTGA
GTGCAAGCAAGCGGACTGCATTCTCATACGAGAATGCAAAACGCTCTAGG
GAGACCAGGCTGTAAACCAGAACAAAAAAATATCAAAAACTAGACTGAAA
TAGTTTACAGCCTGGATATCCAGGCTATCAACTTCCCAGTGGGGCTGAAA
TTGTATTTTTTTCATTTTCAGGAAAAGGCGACGTCGTGTGGGTGGAAACA
ATCGCTGATGACATTGAAACTTACCACGGCAAAGAAGAAATTTTTATGTT
CGAACATATCTTCTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTAC
CGACCGGGAGAACAAGTTACTCTTTTGTTTTCAGTGTACCAAATGGTATC
CCAAGTTCTTATACTGGAATAAAAATTGGATTTATTCGATATGAAATGGA
AGGTATTAGTAATTAATCCACATTCGATTAGAGTTTGATCAGTATCTTTT
CAGTAGCATAAGGGAAATCTAATTTAATAATAGACGATATCGGCTTAACG
AAATTCTTCCCGAATGATTACCCATGATGCATTGCGCAAAAAAATTCAGT
AAGTCAATATTGTCCGTGAATTTTTTTGCGCAATGCATCATGGGTAATCA
TTCGGGGAGGAATTCGTAAAGCCGATATCGTCTATTAGATTAATAATTTC
TCCTCGGGATGAATAACTCGTTGTATTTCGGGAAGTCTCAAACATATAAC
TGACTCAACCAAATTTCTCAGCCATCTAGCATAATTTGTTTGAACCCCTT
GGTGGTGGAACCCTTGGTGGTGGACCCTTGGTGGTGGAACCCTTGGTGGT
GGAACCCTTGGTGGTGGAACCCTTGGTGGTGGAACCCTTTTCTCTTAAGT
TAGAGAAATGGAAATTTCACTTCGGACATAATTTTTTTCATTTACAAACG
TCTTACTTTTGTATCTGAATCCTTTTTTAAATGCATAATTTTTACAAAGT
TAGAGTGCACTTCCTCTCATTTCAACCCTTACGGTGCACTTTGGGAATAG
TGTTTGAAAACAAGGTCTGCAAGACACATTTTCGACCGTAGCCGCCAGGT
GCCGCGCGGACCCTAAAACCGTCCCAGTCTTTTTTCACACCTAAAAATAA
TAGAAAAAATGTTTAAAAAAAGGATTGGATTGAGTTTAGGGTGGTAAATT
GAATAATAAAGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTA
TCCAATGATTATTCATTATTCATCTAAAGAAGAGTGTCTTTATTTTTTTC
TCTTCTTCCTCCTTCACAATAGCTCAAATCACTTTAGCTTACAAATCAAA
AATCAAATTCAAGCGANATCTTCTTCTTCCTTCTTGTAGCTCAAATCACT
TTAGCTTACAAATCAAATATCAAAGTCAAGCGAACCATACACATTCATGA
AGTGATTGACTGCAATCTTCCACGTTACCTTAGTGGTATTGGGATGAGTT
GTACTGAAGATGTTGGCTTTTGTTGTTACAAATATGGCCCTATTCGCATG
TCAGGTATTTTTTAATCAAATTGAAGTTATGTACCAGCTGCCACCAAATA
GGCCCGGGGGTACTACCCTTGCCACCCCGAAAGGGGTGTATCGCCGAGGT
TAGAAAAATGGACCCTACGTGGGATTCGTTTTTGTGAAAATTTTGCCAAA
ATTTGAAAAGAAGTGACCCTGATTTGGACTGAAATTCCAAAGTGTTCTAG
GAATTTTCCACTTTTTATCCAAATTGCCCCCGCCCCCACCCCAAAATAGG
TACCCTGACCTCGTATTCTCATGTTATTATAATGTTTTGATCGCAGGATT
ATTTAGTTGAACAATACATACCAGTTGGCCAAATGAAAAAGATTAAATAC
TTAGTATTTACAGGGATGATCAGGTGTTTTAAGGTTGTTGGCCTAAATTC
CTCATTCAGTTCTGAGCGAAACTTTTTTCGGCAAATTTTCTTACAAAAAT
TAAAATTGATTATTGAAAATTCAACTGAGGAAAAAAGTTTTGTCTTTCTT
CAAATAGCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAATAT
CCCAATAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCACAGAAG
CGAGATTACACCATTGCTAAATCGAAAGGTAATATGAAAGAGATTTTTTC
TAGAGGTTCAGTCCAAGTAACGTAGGTTTCACGATAACATGGACAGTTCC
AGAATATCTATGTGCGTATTACCTGANCACAATCAAACTCATCCAAACGG
CGATCTATCGGGAACATCACGAACATCACAAAGACGGACCGATAACAGTC
CGAGATTACACCATTGCTAAATCGAAAGGTAATATGAAAGAGATTTTTTC
TAGAGGTTCAGTCCAAGTAACGTAGGTTTCACGATAACATGGACAGTTCC
AGAATATCTATGTGCGTATTACCTGAAACAAGCTTTTTATCTAAGAATTT
GCTATTTACAAGCTGAAGAGCAATTTGATAAGAACACAAGGCTGAAAATT
GGCCAAAACCTAAGAACAAATTAAGAACAGGGTGAGCCTCAGATTTCAGA
AATTATTAAGAAAGTACTGATTGAAGTAATGAAGTTTTTAAACCCATTTT
TAGATTTTAAGTAAAGAAACTGAGCGTATTAAGAATATTGTAAGAACTGC
CTGAAAATTTCAAAAAATTAAAAAAAGCCCAGCCTGTATTTCCACGAGCT
TTTCTTATCTTATCGTCTAATTTTTGATTTGTTGATTTCTAGTATTATTC
AAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGACCGCTCCTGA
AAATACATCTCCAACGAATTGGCGATTGAAAATCATCAAAGTAAGATATC
ACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGAACCATGCATT
GAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTAAGTCAAAAGA
TATAAATCAAAACAATTGGTTTTGACTGCTATTCGTCGAAACGAGGTTAC
AGTGTAAGAATTCAGCCACAAAATTGGCCTTTTCTCTATCAAATTGTTGG
AAACATATTATAAAGTTGAATAATTTAAATTTAAAAAAAGCTGCTTTAGG
CGTACAAGCTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAATTTTGGC
CCTTTACGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGCTATTCGC
GAAAGTTTAGGCTCGCGAAAAATTCTTGACAAAATAGAAAACCTGTAAAC
TTCAAACTTTGAATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCTAA
AAGACTAATAAGTCAAAGGACAAATGTTTCAAGCTAATCCAAGAAGTATT
CGTCCCTCTAAGCCATTTTTTCATGTGAAAATTCTCAATTTTACGTCTTG
GTTCGCGAAAGTTTATGCTCGCAAAAAATATTTTTCCGTTAAATTCGCGA
AAGTAAAAGTCGTGAATTTCGCGATTTTT

Coding sequence (CDS) from alignment at sc0000170:437395..442373-

>TCONS_00013619 ID=TCONS_00013619|Name=TCONS_00013619|organism=Clytia hemisphaerica|type=CDS|length=5796bp|location=Sequence derived from alignment at sc0000170:437395..442373- (Clytia hemisphaerica)
TATTATTCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGACC
GCTCCTGAAAATACATCTCCAACGAATTGGCGATTGAAAATCATCAAAGT
AAGATATCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGAAC
CATGCATTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTAAG
TCAAAAGATATAAATCAAAACAATTGGTTTTGAAATCAAACTCATCCAAA
CGGCGATCTATCGGGAACATCACGAACATCACAAAGACGGACCGATAACA
GTCCGAGATTACACCATTGCTAAATCGAAAGCACTTATTCCTGGTCGTTC
ATGTTTCTGTCCTGGTGAAAATATCCCAATAGAGATGATGATTGAAAACA
ATTCATCCAAACTTGTCACAGAAGCGAGCTCAAATCACTTTAGCTTACAA
ATCAAATATCAAAGTCAAGCGAACCATACACATTCATGAAGTGATTGACT
GCAATCTTCCACGTTACCTTAGTGGTATTGGGATGAGTTGTACTGAAGAT
GTTGGCTTTTGTTGTTACAAATATGGCCCTATTCGCATGTCAGGAAAAGG
CGACGTCGTGTGGGTGGAAACAATCGCTGATGACATTGAAACTTACCACG
GCAAAGAAGAAATTTTTATGTTCGAACATATCTTCTACGGCCAGAGAAAA
AGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAACAAGTTACTCTTTTGT
TTTCAGTGTACCAAATGGTATCCCAAGTTCTTATACTGGAATAAAAATTG
GATTTATTCGATATGAAATGGAAGATGATGGCCGATCCGAAGATTTCAAT
CGAACTAAGTAACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTA
GTGGGCATGTGGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTC
TGTTTGACTTTTGGAGTATTATTCAAAGATTCAACTTATTTGCGCTATAT
CGGAGAAGGACTGACCGCTCCTGAAAATACATCTCCAACGAATTGGCGAT
TGAAAATCATCAAAGTAAGATATCACGTTGAAGTGAGGATTGATTTGTCT
TGGACTACAAATGAACCATGCATTGAAATACCGATCATTATCGGGACAGT
TCCATTGGGAATTAAGTCAAAAGATATAAATCAAAACAATTGGTTTTGAA
ATCAAACTCATCCAAACGGCGATCTATCGGGAACATCACGAACATCACAA
AGACGGACCGATAACAGTCCGAGATTACACCATTGCTAAATCGAAAGCAC
TTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAATATCCCAATAGAG
ATGATGATTGAAAACAATTCATCCAAACTTGTCACAGAAGCGAGCTCAAA
TCACTTTAGCTTACAAATCAAATATCAAAGTCAAGCGAACCATACACATT
CATGAAGTGATTGACTGCAATCTTCCACGTTACCTTAGTGGTATTGGGAT
GAGTTGTACTGAAGATGTTGGCTTTTGTTGTTACAAATATGGCCCTATTC
GCATGTCAGGAAAAGGCGACGTCGTGTGGGTGGAAACAATCGCTGATGAC
ATTGAAACTTACCACGGCAAAGAAGAAATTTTTATGTTCGAACATATCTT
CTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAA
CAAGTTACTCTTTTGTTTTCAGTGTACCAAATGGTATCCCAAGTTCTTAT
ACTGGAATAAAAATTGGATTTATTCGATATGAAATGGAAGATGATGGCCG
ATCCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATCTTTTAT
CCTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAAACCATT
GGAGACAAAAAACGTCTGTTTGACTTTTGGAGTATTATTCAAAGATTCAA
CTTATTTGCGCTATATCGGAGAAGGACTGACCGCTCCTGAAAATACATCT
CCAACGAATTGGCGATTGAAAATCATCAAAGTAAGATATCACGTTGAAGT
GAGGATTGATTTGTCTTGGACTACAAATGAACCATGCATTGAAATACCGA
TCATTATCGGGACAGTTCCATTGGGAATTAAGTCAAAAGATATAAATCAA
AACAATTGGTTTTGAAATCAAACTCATCCAAACGGCGATCTATCGGGAAC
ATCACGAACATCACAAAGACGGACCGATAACAGTCCGAGATTACACCATT
GCTAAATCGAAAGCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGA
AAATATCCCAATAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCA
CAGAAGCGAGCTCAAATCACTTTAGCTTACAAATCAAATATCAAAGTCAA
GCGAACCATACACATTCATGAAGTGATTGACTGCAATCTTCCACGTTACC
TTAGTGGTATTGGGATGAGTTGTACTGAAGATGTTGGCTTTTGTTGTTAC
AAATATGGCCCTATTCGCATGTCAGGAAAAGGCGACGTCGTGTGGGTGGA
AACAATCGCTGATGACATTGAAACTTACCACGGCAAAGAAGAAATTTTTA
TGTTCGAACATATCTTCTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTT
CTACCGACCGGGAGAACAAGTTACTCTTTTGTTTTCAGTGTACCAAATGG
TATCCCAAGTTCTTATACTGGAATAAAAATTGGATTTATTCGATATGAAA
TGGAAGATGATGGCCGATCCGAAGATTTCAATCGAACTAAGTAACGAAAA
ACAAGAAATCTTTTATCCTGGTGAAAAGATTAGTGGGCATGTGGTTATTG
AGTTGGATAAACCATTGGAGACAAAAAACGTCTGTTTGACTTTTGGAGTA
TTATTCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGACCGC
TCCTGAAAATACATCTCCAACGAATTGGCGATTGAAAATCATCAAAGTAA
GATATCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGAACCA
TGCATTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTAAGTC
AAAAGATATAAATCAAAACAATTGGTTTTGAAATCAAACTCATCCAAACG
GCGATCTATCGGGAACATCACGAACATCACAAAGACGGACCGATAACAGT
CCGAGATTACACCATTGCTAAATCGAAAGCACTTATTCCTGGTCGTTCAT
GTTTCTGTCCTGGTGAAAATATCCCAATAGAGATGATGATTGAAAACAAT
TCATCCAAACTTGTCACAGAAGCGAGCTCAAATCACTTTAGCTTACAAAT
CAAATATCAAAGTCAAGCGAACCATACACATTCATGAAGTGATTGACTGC
AATCTTCCACGTTACCTTAGTGGTATTGGGATGAGTTGTACTGAAGATGT
TGGCTTTTGTTGTTACAAATATGGCCCTATTCGCATGTCAGGAAAAGGCG
ACGTCGTGTGGGTGGAAACAATCGCTGATGACATTGAAACTTACCACGGC
AAAGAAGAAATTTTTATGTTCGAACATATCTTCTACGGCCAGAGAAAAAG
TAGCTCTAGAGTAGTTCTACCGACCGGGAGAACAAGTTACTCTTTTGTTT
TCAGTGTACCAAATGGTATCCCAAGTTCTTATACTGGAATAAAAATTGGA
TTTATTCGATATGAAATGGAAGATGATGGCCGATCCGAAGATTTCAATCG
AACTAAGTAACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTAGT
GGGCATGTGGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTCTG
TTTGACTTTTGGAGTATTATTCAAAGATTCAACTTATTTGCGCTATATCG
GAGAAGGACTGACCGCTCCTGAAAATACATCTCCAACGAATTGGCGATTG
AAAATCATCAAAGTAAGATATCACGTTGAAGTGAGGATTGATTTGTCTTG
GACTACAAATGAACCATGCATTGAAATACCGATCATTATCGGGACAGTTC
CATTGGGAATTAAGTCAAAAGATATAAATCAAAACAATTGGTTTTGAAAT
CAAACTCATCCAAACGGCGATCTATCGGGAACATCACGAACATCACAAAG
ACGGACCGATAACAGTCCGAGATTACACCATTGCTAAATCGAAAGCACTT
ATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAATATCCCAATAGAGAT
GATGATTGAAAACAATTCATCCAAACTTGTCACAGAAGCGAGCTCAAATC
ACTTTAGCTTACAAATCAAATATCAAAGTCAAGCGAACCATACACATTCA
TGAAGTGATTGACTGCAATCTTCCACGTTACCTTAGTGGTATTGGGATGA
GTTGTACTGAAGATGTTGGCTTTTGTTGTTACAAATATGGCCCTATTCGC
ATGTCAGGAAAAGGCGACGTCGTGTGGGTGGAAACAATCGCTGATGACAT
TGAAACTTACCACGGCAAAGAAGAAATTTTTATGTTCGAACATATCTTCT
ACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAACA
AGTTACTCTTTTGTTTTCAGTGTACCAAATGGTATCCCAAGTTCTTATAC
TGGAATAAAAATTGGATTTATTCGATATGAAATGGAAGATGATGGCCGAT
CCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATCTTTTATCC
TGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAAACCATTGG
AGACAAAAAACGTCTGTTTGACTTTTGGAGTATTATTCAAAGATTCAACT
TATTTGCGCTATATCGGAGAAGGACTGACCGCTCCTGAAAATACATCTCC
AACGAATTGGCGATTGAAAATCATCAAAGTAAGATATCACGTTGAAGTGA
GGATTGATTTGTCTTGGACTACAAATGAACCATGCATTGAAATACCGATC
ATTATCGGGACAGTTCCATTGGGAATTAAGTCAAAAGATATAAATCAAAA
CAATTGGTTTTGAAATCAAACTCATCCAAACGGCGATCTATCGGGAACAT
CACGAACATCACAAAGACGGACCGATAACAGTCCGAGATTACACCATTGC
TAAATCGAAAGCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAA
ATATCCCAATAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCACA
GAAGCGAGCTCAAATCACTTTAGCTTACAAATCAAATATCAAAGTCAAGC
GAACCATACACATTCATGAAGTGATTGACTGCAATCTTCCACGTTACCTT
AGTGGTATTGGGATGAGTTGTACTGAAGATGTTGGCTTTTGTTGTTACAA
ATATGGCCCTATTCGCATGTCAGGAAAAGGCGACGTCGTGTGGGTGGAAA
CAATCGCTGATGACATTGAAACTTACCACGGCAAAGAAGAAATTTTTATG
TTCGAACATATCTTCTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCT
ACCGACCGGGAGAACAAGTTACTCTTTTGTTTTCAGTGTACCAAATGGTA
TCCCAAGTTCTTATACTGGAATAAAAATTGGATTTATTCGATATGAAATG
GAAGATGATGGCCGATCCGAAGATTTCAATCGAACTAAGTAACGAAAAAC
AAGAAATCTTTTATCCTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAG
TTGGATAAACCATTGGAGACAAAAAACGTCTGTTTGACTTTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007599XLOC_007599Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013619-proteinTCONS_00013619-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013619-exon-sc0000170-1575043694:442332..442373TCONS_00013619-exon-sc0000170-1575043694:442332..442373Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:441838..442001TCONS_00013619-exon-sc0000170-1575043694:441838..442001Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:440472..440702TCONS_00013619-exon-sc0000170-1575043694:440472..440702Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:439370..439534TCONS_00013619-exon-sc0000170-1575043694:439370..439534Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:438770..438866TCONS_00013619-exon-sc0000170-1575043694:438770..438866Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:438546..438643TCONS_00013619-exon-sc0000170-1575043694:438546..438643Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1575043694:437395..438131TCONS_00013619-exon-sc0000170-1575043694:437395..438131Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:442332..442373TCONS_00013619-exon-sc0000170-1510915933:442332..442373Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:441838..442001TCONS_00013619-exon-sc0000170-1510915933:441838..442001Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:440472..440702TCONS_00013619-exon-sc0000170-1510915933:440472..440702Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:439370..439534TCONS_00013619-exon-sc0000170-1510915933:439370..439534Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:438770..438866TCONS_00013619-exon-sc0000170-1510915933:438770..438866Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:438546..438643TCONS_00013619-exon-sc0000170-1510915933:438546..438643Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1510915933:437395..438131TCONS_00013619-exon-sc0000170-1510915933:437395..438131Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:442332..442373TCONS_00013619-exon-sc0000170-1491911889:442332..442373Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:441838..442001TCONS_00013619-exon-sc0000170-1491911889:441838..442001Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:440472..440702TCONS_00013619-exon-sc0000170-1491911889:440472..440702Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:439370..439534TCONS_00013619-exon-sc0000170-1491911889:439370..439534Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:438770..438866TCONS_00013619-exon-sc0000170-1491911889:438770..438866Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:438546..438643TCONS_00013619-exon-sc0000170-1491911889:438546..438643Clytia hemisphaericaexon
TCONS_00013619-exon-sc0000170-1491911889:437395..438131TCONS_00013619-exon-sc0000170-1491911889:437395..438131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:437395..442373 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.58413	7.40956	18.4628	17.1903	2.87947	2.95253	1.18056	0.612726	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011022Arrestin_C-like
IPR011021Arrestin-like_N
IPR014756Ig_E-set
Blast
[Close]
BLAST of TCONS_00013619 vs. Swiss-Prot (Human)
Match: ARRD3 (Arrestin domain-containing protein 3 OS=Homo sapiens GN=ARRDC3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.136e-18
Identity = 87/338 (25.74%), Postives = 153/338 (45.27%), Query Frame = 2 
Query:   95 LSNEKQEIFYPGEKISGHVVIELDKPLETKNVCLTFGGKGDVVWVETIADDIETYHGK---EEIFMFEH--IFYGQRKSSSRV-----VLPTGRTSYSFVFSVPNG-IPSSYTGIKIGFIRYEMEAQITLAYKSNIKVKRTIHIHEVIDCNLPRYLSGIGMSCTEDVGFCCY--KYGPIRMSALIPGRSCFCPGENIPIEMMIENNSSKLVTEARIKLIQTAIYREHHEHHKDGPITVRDYTIAKSKVLFKDSTYLRYIGEGLTAPENTSPTNWRLKIIKVRYHVEVRIDLSWTTNEPCIEIPIIIGTVPL---GIKSKDINQN-----NWF*LLFVE 1045
            L++    ++  G+ +SG V +E+   +  K++ +   G   V W E+      T + +   EE+  F H  I  G  +           + +GR  Y+F F +P   + +S+ G + G +RY ++A++   +   +K+K+   + E ID N P  LS    + T++   CC+    GPI +SA I  R  + PGE+I I   IEN SS++V      + + AIY+    + K     V+                  + G+ L  P   SP+     II+V Y + V +D+    +   + +P++IGT+PL   G ++  ++       NW  L   E
Sbjct:   16 LNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNAGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIHSGRHEYAFSFELPQTPLATSFEG-RHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLS--PQAGTKEKTLCCWFCTSGPISLSAKI-ERKGYTPGESIQIFAEIENCSSRMV------VPKAAIYQTQAFYAKGKMKEVKQLVANLRGESLSSGKTETWNGKLLKIPP-VSPSILDCSIIRVEYSLMVYVDIPGAMDL-FLNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLSLSLPE 341
The following BLAST results are available for this feature:
BLAST of TCONS_00013619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARRD31.136e-1825.74Arrestin domain-containing protein 3 OS=Homo sapie... [more]
back to top