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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013590 ID=TCONS_00013590|Name=TCONS_00013590|organism=Clytia hemisphaerica|type=transcript|length=1502bpRun BLAST on NCBI protein sequence of TCONS_00013590-protein >TCONS_00013590-protein ID=TCONS_00013590-protein|Name=TCONS_00013590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp RNKEKSKMAENTTKREKIAQMSSEVVDSNPFSRLMALKRMGIVDNYERIRRun BLAST on NCBI transcript from alignment at sc0000170:49107..61017- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013590 ID=TCONS_00013590|Name=TCONS_00013590|organism=Clytia hemisphaerica|type=transcript|length=11911bp|location=Sequence derived from alignment at sc0000170:49107..61017- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000170:49107..61017- >TCONS_00013590 ID=TCONS_00013590|Name=TCONS_00013590|organism=Clytia hemisphaerica|type=CDS|length=16254bp|location=Sequence derived from alignment at sc0000170:49107..61017- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013590 vs. Swiss-Prot (Human)
Match: UBA5 (Ubiquitin-like modifier-activating enzyme 5 OS=Homo sapiens GN=UBA5 PE=1 SV=1) HSP 1 Score: 468.003 bits (1203), Expect = 1.900e-161 Identity = 259/376 (68.88%), Postives = 306/376 (81.38%), Query Frame = 3
Query: 45 REKIAQMSSEVVDSNPFSRLMALKRMGIVDNYERIRDYXXXXXXXXXXXXXTSEMLTRCGIGKLIMFDYDKVELANMNRLFFRPDQSGMSKVDAAVNTLRDINPDVEFEAHNYNITSVDNFNHFMGRIKSGGLN-GKPVDLVLSCVDNFEARMAINTACNEIGQAWMESGVSENAVSGHVQVILPGETACFACAPPLVVASNIDEKTLKREGVCAASLPTTMGIVAGFLVQNTLKYLLKFGTVSYYLGYNAMQDFFPTMIMKPNPHCDESFCLKRQQAYQEKLAKQPKXXXXXXXXXXXXXXXXXXWGISLVDESSDLREDT---QLQELTTGLSYAYTKXXXXXXXXXXXXXXXXXXXXXXXXSLEDLMRQMKQI 1160
R +I +MSSEVVDSNP+SRLMALKRMGIV +YE+IR +++A+VG+GGVGSVT+EMLTRCGIGKL++FDYDKVELANMNRLFF+P Q+G+SKV AA +TLR+INPDV FE HNYNIT+V+NF HFM RI +GGL GKPVDLVLSCVDNFEARM INTACNE+GQ WMESGVSENAVSGH+Q+I+PGE+ACFACAPPLVVA+NIDEKTLKREGVCAASLPTTMG+VAG LVQN LK+LL FGTVS+YLGYNAMQDFFPTM MKPNP CD+ C K+Q+ Y++K+A PK EEEEI+HEDNEWGI LV E S+ + +L G++ AYT + + S T T E +SLEDLM +MK +
Sbjct: 37 RVRIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPNPQCDDRNCRKQQEEYKKKVAALPK--QEVIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGPVPDLPEGITVAYT------IPKKQEDSVTELTVEDSGESLEDLMAKMKNM 404 The following BLAST results are available for this feature:
BLAST of TCONS_00013590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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