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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013550 ID=TCONS_00013550|Name=TCONS_00013550|organism=Clytia hemisphaerica|type=transcript|length=2845bp
gaaaaatgttttaactAAAACAATAaagggaaatttgaattacaAAATGA
TGACGATGTCATCGTCATGTTAttctgtttcaaaatttctacaTAAATGC
TTGAAACGGTCTTGTTTCAGTTCTTGGTAACATCTTGTTTGTTTTTAGCT
CATATTTCTTCAGTTATTTCTTAGAGAGCTTTGGTACTGAAAACTTTAAT
ACATTCTGTTACATTAGTTGTTTTACTCTCTCGCAAAAGATGCTTGTCAG
AAGGGGGTCATGTGCTGGgtgattggaaaaaaatttctctaagATAGCTA
TCGACTACAACACTTTTGAGTTGCAGGGGAAATCATATACCGTCAATATA
TATGCTTTATAAATAGGGTACGGACTTGTTTTACtttaaaaagacaaatt
tttcatttgtcaagTAATCGTACTCAAGAACACCAATGTGGATGAAACCT
AAAACCCAAGATACGAATCATACAAAGACCTacaacaacaacacaacaaa
ATGGCAGAATCTTCAATCCCGACGATATATCTTGTGATCGTCTTTGCAGT
CATTTTTCTAATCTTTCCAGCTATCGTTTATCTTTGCTGTCGACGAAAAT
ACAGAAAGAAAACGGACACAAATTGTTGCTTGTTGCTCATCTATCTACCA
TTCTTACCCTTCATTTGGTTATATTATTTTATTCGGCGTCATAAGCTACC
TTGTTATGATTGCATACAACGTTGCTGTGATGTACGACGCCCGGGCGGTC
GAAACCATCCGCCCAAAGTGCTCACAATCAATAAAGCATCACGTGAAGGA
TTTTCTTGGTATCTCCATAGCTACATGGCATGCTTGAAACATTGGGGATG
TTTTCGTTTTGATTGGACTAAAGATCTGACTGTTATTGAAGCTATTAAAC
GTTATGTTGAAGGCCCGCAAAAAGACTGGGATGTTTTAGTAAGCGATATA
AAGGAGAATGTTTATCTTAATTTCTTGATTGAATACCTAAATCGACGTGA
GCCAAAGCTCTATTTTCGTATTCTACCTTCTGGAAGTATCCGAGAGGGAT
TTGGTTATCCGGTTAATTCGACCTCGGTTTTAGCATCGGATTATGATTTG
ATGCTTGTTCCGGATGGTATTTTTGTTTATGACGAGTTTACACAACGGGA
AGATGTTTTTCCGGTCTCTTTTACAGCGGTTGACGACCCAACACAGAATC
CAGAACGACCGAAAGGGTTTTTATGGTTAAAGCTTGAGAAGACGATTGAA
GTATGGAAAAATTTATGTTATTAAAGGCTGACGAGCGATGGAGTAATTCA
CTATCTCTCACAGCTGGCAGTACTAGATGTTATCATTGATCAAATCGGAA
AGCCAGCTTTCTTAAAGCAATTCAACGATCAAATGCATGgagcaaaaagt
gaaaaaaagtacACGATATGTAGTGAACGTACGGGGCCTGCTCTTAACGT
TTCTATCACAAGGCACAAGCTGTTCCAAAAGATTCCTTGTCTTGAGAAGA
TCCTTCGTGAGCCTGAAAAGTTATTAGATGCCGACTTCACATTAGCATTG
GCATGTCCAAAGTTCCCACGTGATGGAAAATATTTCTTCGAACGTAGAGA
AGAAAACGAGAAGATTCATTGGCCTGGGAGAGAGGTTGTCAATAAGATCG
AACAACTCGGTTGCCATGTGGTACCTAAACCTTCAAAAAAGACGCTAGCC
TCCTTTCAAAAAGAACAAATGGCAGATAGTTTCCTGGGTACAAGTGCTGT
TTTAGAATGGAGATATTCATTTTCACAAGCTGAAATGGTGTTATCTGATC
ACGTCCCTCAAGCCATCAGAACCAGTTATCTCGCATTCAAAGCTGTCATT
AAAACACACATCAACCGTGTATTCGATGCTGAGGGGTTACCTCACAAGAT
TCCATCGTATGCATTGAAAACCATCTTGTTTTACGAATTGGAGAATATGC
CGGTAAATTTCAATGCAAAAGAAATAGAGGAGAAATTCTTTTGGATTTTA
TTCGAATCACTCCAACAGAAAATCGATTCGAAAAAATGCCCTCATTATTG
GATCAAAAGTTTGGATTTGTTTTCAGATATAAAGGAAATTGATTTCGAAT
TTATGAAAGATCGATTAAATCGAATCAAACAAAGACCGATCGAGTATATT
GCATCCGAATGGCTCGAATGGAATCGGTACATGCGACAACATTGTTGTGC
GTCTTGCATCGAACCGTATAAATTGAAGAGAAAAGTAGTCGGAGATGACT
TTAAGCCGTTACCGTGTTGTTGTTTTGTGACTTTGAACATGAAGAGAGAC
AAGGATGATGAGGAAGAGGTAAAAATTGTATATGATGATGTTGCTATTGA
GGTTTACTAATCAATGACTTGTCGTCTCGCGACTGGTCGGGTCCCTGTtt
tacaccctcgaaagtctcgcAAAAACATAATGAATTAGTAATTGGGTCTC
TGATAATCTAACAATGATGTAGGGTCATAAATTCTCGTAATCTGGACCAA
AGCATGAAAACCTTGGCTGAATATTGGAGAAAACAGTCTCTTACAGGGTC
GTTAAAAGGTCAAAAAAGGGGCAAAACTTTTCGAGATTCAGTTTCTTAAA
GGTTCGATCCTCGAACTTTGACTTGGACATGTCACTTCACAAACTTATTA
CTCCTTTGGTTCGGAgccattttttaagaattttattttgacaCTTTATT
ACTAcgtacacttttttttcttctcaatTTCATATCCTTGTAGATTTTAT
TAAGATCAATTTCATAACCTGATAGTAACTTGATAGATTTTattaagaaa
tttattttatcgGTATTTTTCATTAGGAAGTTaattaatttgaaa Run BLAST on NCBI transcript from alignment at sc0000170:142149..147869+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013550 ID=TCONS_00013550|Name=TCONS_00013550|organism=Clytia hemisphaerica|type=transcript|length=5721bp|location=Sequence derived from alignment at sc0000170:142149..147869+ (Clytia hemisphaerica)
gaaaaatgttttaactAAAACAATAaagggaaatttgaattacaAAATGA
TGACGATGTCATCGTCATGTTAttctgtttcaaaatttctacaTAAATGC
TTGAAACGGTCTTGTTTCAGTTCTTGGTAACATCTTGTTTGTTTTTAGCT
CATATTTCTTCAGTTATTTCTTAGAGAGCTTTGGTACTGAAAACTTTAAT
ACATTCTGTTACATTAGTTGTTTTACTCTCTCGCAAAAGATGCTTGTCAG
AAGGGGGTCATGTGCTGGgtgattggaaaaaaatttctctaagATAGCTA
TCGACTACAACACTTTTGAGTTGCAGGGGAAATCATATACCGTCAATATA
TATGCTTTATAAATAGGGTACGGACTTGTTTTACtttaaaaagacaaatt
tttcatttgtcaagTAATCGTACTCAAGAACACCAATGTGGATGAAACCT
AAAACCCAAGATACGAATCATACAAAGACCTacaacaacaacacaacaaa
ATGGCAGAATCTTCAATCCCGACGATATATCTTGTGATCGTCTTTGCAGT
CATTTTTCTAATCTTTCCAGCTATCGTTTATCTTTGCTGTCGACGAAAAT
ACAGAAAGAAAACGGACACAAATTGTTGCTTGTTGCTCATCTATCTACCA
TTCTTACCCTTCATTTGGTTATATTATTTTATTCGGCGTCATAAGCTACC
TTGTTATGATTGCATACAACGTTGCTGTGATGTACGACGCCCGGGCGGTC
GAAACCATCCGCCCAAAGTGCTCACAATCAATAAAGCATCACGTGAAGGA
TTTTCTTGGTATCTCCATAGCTACATGGCATGCTTGAAACATTGGGGATG
TTTTCGTTTTGATTGGACTAAAGATCTGACTGTTATTGAAGCTATTAAAC
GTTATGTTGAAGGCCCGCAAAAAGACTGGGATGTTTTAGTAAGCGATATA
AAGGAGAATGTTTATCTTAATTTCTTGATTGAATACCTAAATCGACGTGA
GCCAAAGCTCTATTTTCGTATTCTACCTTCTGGAAGTATCCGAGAGGGAT
TTGGTTATCCGGTTAATTCGACCTCGGTTTTAGCATCGGATTATGATTTG
ATGCTTGTTCCGGATGGTATTTTTGTTTATGACGAGTTTACACAACGGGA
AGATGTTTTTCCGGTCTCTTTTACAGCGGTTGACGACCCAACACAGAATC
CAGAACGACCGAAAGGGTTTTTATGGTTAAAGCTTGAGAAGACGATTGAA
GTATGGAAAAATTTATGTTATTAAAGGCTGACGAGCGATGGAGGTAATAG
AGCCGAAacggtacttaggcaaatggagggtacgggtatgtgccaccctt
gagggtaccttttttggacctcCAAAGTTCCACTAAGGgctggaaaaatc
agaaaatcaaatttcagccccactaagGGTCGAGAAgataagaaaatttc
aactttttgcccctaaAAATGGAAGGGTTCTATTCTAGTATAATGAAAAC
TGTAAATACGGACAAGCTCCCTCCCCCTTTCCCTcatttggaatattttt
taaaggaaaaaagtgAGGTGTACTCACTAAAACGATCGTCTCGCATGCAA
TTTTTATTTACNGTTTTCCGGTCTCTTTTACAGCGATTGACGACCCAACA
CAGAATCCAGAACGACCGAAAGGGTTTTTATGGTTAAAGCTTGAGAAGAC
GATTGAAGTATGGAAAAATTTATGTTATGAAAGGCTGACGAGCGATGGAG
GTAATAGAGCCGAAacggtacttaggcaaatggagggtacgggtatgtgc
cacccttgagggtaccttttttggacctcCAAAGTTCCACTAAGGgctgg
aaaaatcagaaaattaaatttcagccccactaagGGTCGAGAAgataaga
aaatttcaactttttgcccctaaAAATGGAAGGGTTCTATTCTAGTATAA
TGAAAACTGTAAATACGGACAAGCTCCCTCCCCCTTTCCCTcatttggaa
tattttttaaaggaaaaaagtgAGGTGTACTCACTAAAACGATCGTCTCG
CATgcaatttttatttacaaaaagtgcatttttctcgtccggaaagggtt
aaataccaagtttatgtatgtatgtttttctgcgacagagacagtaaggt
tctaatttgtctacatcctgactgactgaggacgacggtaaatcagcact
tttaccgtcctcgattttttttccaaatcgcttcagtcacttaccgtcct
caaaagtgcaaatacataaactggCTAGTGACAGTAGACATAAAATACCA
GATataatatttctattttgtcatAACAATAATCcataatatttcttttt
cttttattgggGTAGTAATTCACTATCTCTCACAGCTGGCAGTACTAGAT
GTTATCATTGATCAAATCGGAAAGCCAGCTTTCTTAAAGCAATTCAACGA
TCAAATGCATGgagcaaaaagtgaaaaaaagtacACGATATGTAGTGAAC
GTACGGGGCCTGCTCTTAACGTTTCTATCACAAGGCACAAGCTGTTCCAA
AAGATTCCTTGTCTTGAGAAGATCCTTCGTGAGCCTGAAAAGTTATTAGA
TGCCGACTTCACATTAGCATTGGCATGTCCAAAGTTCCCACGTGATGGAA
AATGTAAGTTTCTTTGATGATATCTTCATGTCTGTTTGCTCTTAGAACCA
GCTGTAATAAAAATGCCCTTATTTTTCAAAGGGTAAATTTACTTTATCAT
CAAGTCATCTGAACAATTAAAGTTATAGAACAATATTGCCCTTGAATGAT
ATGAGCTCGCTCGCTGAATAAGTTACTAAATTAAACTAACTaagttaaaa
aattttgatgacgaaGAACTTGAAACTTgaataatttttctgaaaatcaa
taaagataaactggtttttttacctaatggtattttttattatatttgta
gATTTCTTCGAACGTAGAGAAGAAAACGAGAAGATTCATTGGCCTGGGAG
AGAGGTTGTCAATAAGATCGAACAACTCGGTTGCCATGTGGTACCTAAAC
CTTCAAAAAAGACGCTAGCCTCCTTTCAAAAAGGTAagctttgtcaattt
ttacaatcaaaaTTTGTTCTCGAAGCCAACAACGAGAATAAGGAAGCAAT
TTGTCTCATCTATGTTCTAGAAtaattaaaacctttaaagccGAGAGCAG
CTATGACCTAAAGACTATTATCATGATAGTAATTTGCAAACCTTTTGATA
CCAGGGGGTCAGCTCTAAAAcctggggggtactaggttgCGAGATGATGG
GTATGTCTGACCGAAGCTCAAAAGTAGACCCTTAGAGAGAGATTGAAATg
tccattttttgacgtttttgccaccctatttccacaaaatttcagccagC
GTAAAAGGGGCAGGTGTTGAATTAGGGCCGgagtaaaaagggccgataag
gtattaacCTTTGACTGAATGCAAAAATGATTTAACTTAGATTAGAATGA
GAACAAAGGGGTCCAGCGAAGATTAATAACTAGGGACATTTGTTCGGGAC
TTCAGAGTACCAATGTAACACTTCTTTGGTTTTCACTACCCCCTTGAACT
AAaaggattttaaagttttttgggTATTCCATCACGTCCACTGCACAGGA
ACCCGTCGGCGTACTTAAATCTGATGtattcatttcgccatcagtatata
aagaagaaatcatagcatgatTCTCCAGGCTACACGTCCACTTGTCAATG
GAGATGCGAGCTTCCTGTTGATACATAACAAGAAATACCTTAAGAAAAGA
AGTTTTTGCGAATGAGCCCATTTCgccaattttggtgcaatttggtggaa
tttattttggcgaatcaataaaatttctagatttggcgaaaattaatttt
ggcgaacgacccatttttgttcgatattttagctgaaaaaagagggaaaa
aagGGTTTTCAGGAGAAATAGAaactaaattgaaagaaaattaaatttag
cgaaaatttattttggcgaatgactaaaaatttctttccgccaaaatttc
ttcccttaaggtactacTTTTAATAAAAGGTTAATTGTCAAGTTCTTCAG
TGGGTTTAACGTGCGCTTAAGCCAACTATGAGCACCTTCtcttttatctg
atattccgaaaTCGGGTTGGTGGCCGTCCACGCTAAAGCACTAAAGGGTG
CGAACCaattgacctttatatatccctggaccaagttgctcaatgccggc
caagcaaaatattataatcggattttttttgaaattggtacccgcggaga
gagcgctagatctagtttcgcttgtacactaatgatgtagcgccgtttgt
cgtcaggcaaagtttcaaacactacagtaaaatggcttctttgcgggtac
caactttcaaaaaaaattcgatcaaagatggtggatatagcttggtccag
ggatatataaaagtCAGTGGTGCGgaccaattgaaaattttccagaacCT
TTAGAATTTTagcatgttggatgaaattttCTACATCTGAGTGCTAGAAA
ACCTCTCAAATTATAATATTCCTTTTTCTTCTTATATAGAACAAATGGCA
GATAGTTTCCTGGGTACAAGTGCTGTTTTAGAATGGAGATATTCATTTTC
ACAAGCTGAAATGGTGTTATCTGATCACGTCCCTCAAGCCATCAGAACCA
GTTATCTCGCATTCAAAGCTGTCATTAAAACACACATCAACCGTGTATTC
GATGCTGAGGGGTTACCTCACAAGATTCCATCGTATGCATTGAAAACCAT
CTTGTTTTACGAATTGGAGAATATGCCGGTAAATTTCAATGCAAAAGAAA
TAGAGGAGAAATTCTTTTGGATTTTATTCGAATCACTCCAACAGAAAATC
GATTCGAAAAAATGCCCTCATTATTGGATCAAAAGTTTGGATTTGTTTTC
AGATATAAAGGAAATTGATTTCGAATTTATGAAAGATCGATTAAATCGAA
TCAAACAAAGACCGATCGAGTATATTGCATCCGAATGGCTCGAATGGAAT
CGGTACATGCGACAACATTGTTGTGCGTCTTGCATCGAACCGTATAAATT
GAAGAGAAAAGTAGTCGGAGATGACTTTAAGCCGTTACCGTGTTGTTGTT
TTGTGACTTTGAACATGAAGAGAGACAAGGATGATGAGGAAGAGGTAAAA
ATTGTATATGATGATGTTGCTATTGAGGTTTACTAATCAATGACTTGTCG
TCTCGCGACTGGTCGGGTCCCTGTtttacaccctcgaaagtctcgcAAAA
ACATAATGAATTAGTAATTGGGTCTCTGATAATCTAACAATGATGTAGGG
TCATAAATTCTCGTAATCTGGACCAAAGCATGAAAACCTTGGCTGAATAT
TGGAGAAAACAGTCTCTTACAGGGTCGTTAAAAGGTCAAAAAAGGGGCAA
AACTTTTCGAGATTCAGTTTCTTAAAGGTTCGATCCTCGAACTTTGACTT
GGACATGTCACTTCACAAACTTATTACTCCTTTGGTTCGGAgccattttt
taagaattttattttgacaCTTTATTACTAcgtacacttttttttcttct
caatTTCATATCCTTGTAGATTTTATTAAGATCAATTTCATAACCTGATA
GTAACTTGATAGATTTTattaagaaatttattttatcgGTATTTTTCATT
AGGAAGTTaattaatttgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013550-exon-sc0000170-1491911889:142149..143441 | TCONS_00013550-exon-sc0000170-1491911889:142149..143441 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1510915933:142149..143441 | TCONS_00013550-exon-sc0000170-1510915933:142149..143441 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1575043694:142149..143441 | TCONS_00013550-exon-sc0000170-1575043694:142149..143441 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1491911889:144514..144801 | TCONS_00013550-exon-sc0000170-1491911889:144514..144801 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1510915933:144514..144801 | TCONS_00013550-exon-sc0000170-1510915933:144514..144801 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1575043694:144514..144801 | TCONS_00013550-exon-sc0000170-1575043694:144514..144801 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1491911889:145100..145231 | TCONS_00013550-exon-sc0000170-1491911889:145100..145231 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1510915933:145100..145231 | TCONS_00013550-exon-sc0000170-1510915933:145100..145231 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1575043694:145100..145231 | TCONS_00013550-exon-sc0000170-1575043694:145100..145231 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1491911889:146738..147869 | TCONS_00013550-exon-sc0000170-1491911889:146738..147869 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1510915933:146738..147869 | TCONS_00013550-exon-sc0000170-1510915933:146738..147869 | Clytia hemisphaerica | exon |
| TCONS_00013550-exon-sc0000170-1575043694:146738..147869 | TCONS_00013550-exon-sc0000170-1575043694:146738..147869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:142149..147869 + |
Blast
The following BLAST results are available for this feature:
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