TCONS_00013547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013547
Unique NameTCONS_00013547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013547 ID=TCONS_00013547|Name=TCONS_00013547|organism=Clytia hemisphaerica|type=transcript|length=529bp
GATAAATATATTAGTAcaagaaaaaacacaaaaacaggGAAAGATATGAA
AGCCATTTTGCTGCAGCACCCTGATTTCAATAACCCCCAAAGTTTCACGG
TGCACCATAAGGAAAACCGCACAGCAAAATGCCAAGCTTGTAAGACCGTT
TTGAGTATCGGTGAATTAGCGATTAAAGTGCAAGGCACTTTGAGAATACC
CTTTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATGTATGTATGTCCAA
AAGATCATTGTCTACGAAAATCTCCAAAATGGACAAACATTAAATTCACC
GGTGCCATCACATGGGCTGATAACGTAAGCGAGGAAGAGAAGCagctttt
attgaatatttaattGTACactcttgttttttttataagaacaaagaata
taagaacataaggtttcgagaGGTCAAAAATTTTTAGAACATGCTACATG
TTTCAATAAAATGTTAAGAGGTTGTTAAGGCAGCTGACTTCACGGAAAAA
CACGTTTAGAGCCAATTAAGACTCCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00013547-protein

>TCONS_00013547-protein ID=TCONS_00013547-protein|Name=TCONS_00013547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
DKYISTRKNTKTGKDMKAILLQHPDFNNPQSFTVHHKENRTAKCQACKTV
LSIGELAIKVQGTLRIPFGKEKAVMEVAMYVCPKDHCLRKSPKWTNIKFT
GAITWADNVSEEEKQLLLNI
Run BLAST on NCBI

transcript from alignment at sc0000170:9..640+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013547 ID=TCONS_00013547|Name=TCONS_00013547|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0000170:9..640+ (Clytia hemisphaerica)
GATAAATATATTAGTAcaagaaaaaacacaaaaacaggGAAAGATATGAA
AGCCATTTTGCTGCAGCACCCTGATTTCAATAACCCCCAAAGTTTCACGG
TGCACCATAAGGAAAACCGCACAGCAAAATGCCAAGCTTGTAAGACCGTT
TTGAGTATCGGTGAATTAGCGATTAAAGTGCAAGGCGCTTTANAGTTTCA
CGGTGCACCATAAGGAAAACCGCACAGCAAAATGCCAAGCTTGTAAGACC
GTTTTGAGTATCGGTGAATTAGCGATTAAAGTCCAAGGCACTTTGAGAAT
ACCCTTTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATGTATGTATGTC
CAAAAGATCATTGTCTACGAAAATCTCCAAAATGGACAAACATTAAATTC
ACCGGTGCCATCACATGGGCTGATAACGTAAGCGAGGAAGAGAAGCagct
tttattgaatatttaattGTACactcttgttttttttataagaacaaaga
atataagaacataaggtttcgagaGGTCAAAAATTTTTAGAACATGCTAC
ATGTTTCAATAAAATGTTAAGAGGTTGTTAAGGCAGCTGACTTCACGGAA
AAACACGTTTAGAGCCAATTAAGACTCCTTTG

Coding sequence (CDS) from alignment at sc0000170:9..640+

>TCONS_00013547 ID=TCONS_00013547|Name=TCONS_00013547|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000170:9..640+ (Clytia hemisphaerica)
GATAAATATATTAGTAcaagaaaaaacacaaaaacaggGAAAGATATGAA
AGCCATTTTGCTGCAGCACCCTGATTTCAATAACCCCCAAAGTTTCACGG
TGCACCATAAGGAAAACCGCACAGCAAAATGCCAAGCTTGTAAGACCGTT
TTGAGTATCGGTGAATTAGCGATTAAAGTGCAAGGCACTTTGAGAATACC
CTTTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATGTATGTATGTCCAA
AAGATCATTGTCTACGAAAATCTCCAAAATGGACAAACATTAAATTCACC
GGTGCCATCACATGGGCTGATAACGTAAGCGAGGAAGAGAAGCagctttt
attgaatatttaaGATAAATATATTAGTAcaagaaaaaacacaaaaacag
gGAAAGATATGAAAGCCATTTTGCTGCAGCACCCTGATTTCAATAACCCC
CAAAGTTTCACGGTGCACCATAAGGAAAACCGCACAGCAAAATGCCAAGC
TTGTAAGACCGTTTTGAGTATCGGTGAATTAGCGATTAAAGTGCAAGGCA
CTTTGAGAATACCCTTTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATG
TATGTATGTCCAAAAGATCATTGTCTACGAAAATCTCCAAAATGGACAAA
CATTAAATTCACCGGTGCCATCACATGGGCTGATAACGTAAGCGAGGAAG
AGAAGCagcttttattgaatatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007574XLOC_007574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013547-proteinTCONS_00013547-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013547-exon-sc0000170-1491911889:9..192TCONS_00013547-exon-sc0000170-1491911889:9..192Clytia hemisphaericaexon
TCONS_00013547-exon-sc0000170-1510915933:9..192TCONS_00013547-exon-sc0000170-1510915933:9..192Clytia hemisphaericaexon
TCONS_00013547-exon-sc0000170-1575043694:9..192TCONS_00013547-exon-sc0000170-1575043694:9..192Clytia hemisphaericaexon
TCONS_00013547-exon-sc0000170-1491911889:296..640TCONS_00013547-exon-sc0000170-1491911889:296..640Clytia hemisphaericaexon
TCONS_00013547-exon-sc0000170-1510915933:296..640TCONS_00013547-exon-sc0000170-1510915933:296..640Clytia hemisphaericaexon
TCONS_00013547-exon-sc0000170-1575043694:296..640TCONS_00013547-exon-sc0000170-1575043694:296..640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:9..640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.160242	0	1.22664	0	0.505655	0.523765	0	0	0	2.24156	0	0	1.04604	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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