TCONS_00013546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013546
Unique NameTCONS_00013546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013546 ID=TCONS_00013546|Name=TCONS_00013546|organism=Clytia hemisphaerica|type=transcript|length=488bp
CGTAGATTGAGCTTATGGTTGATAGGATGCCTCGACGTGTCGCTGGTTTG
TCTTTCAATACGACTCTAAAGCCAAGACTGTCGTTTTCGATGCACCAATG
TACACCGAGGGCCCTGTCGACTGGTAGGATGTCGGTTGTCAAATCAAGCT
CTTTGATACTCTTTCCACGTTTTGTAGGGTTGATTGACTTCAGAACTTCT
CTTGAATTGGATACGACTTTCGTTAACTTGAATCCTCCAGCAGCACACAT
GTCGATTGACTTTCGAATGCCTTTGATTGCTTGTGAGTCATCTGGATATG
ATTTCAGTACGTCGTCAACATAGAGGTTCTGTCGAAGCGTGTCTGCTGTT
TCTTGATCGAACTGTGCTTCATTGTCACTTGCACATAGTTTCAGAGCGAA
GTTTGCGATGCTTGGTGATGAAATGGCTCCTTGGACGTGGGTGGTCATTA
CGTATTCTTTGAAATCTGATTGCAGATCTCCATCTGGC
Run BLAST on NCBI

protein sequence of TCONS_00013546-protein

>TCONS_00013546-protein ID=TCONS_00013546-protein|Name=TCONS_00013546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
PDGDLQSDFKEYVMTTHVQGAISSPSIANFALKLCASDNEAQFDQETADT
LRQNLYVDDVLKSYPDDSQAIKGIRKSIDMCAAGGFKLTKVVSNSREVLK
SINPTKRGKSIKELDLTTDILPVDRALGVHWCIENDSLGFRVVLKDKPAT
RRGILSTISSIY
Run BLAST on NCBI

transcript from alignment at sc0000168:510982..511469

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013546 ID=TCONS_00013546|Name=TCONS_00013546|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0000168:510982..511469 (Clytia hemisphaerica)
GCCAGATGGAGATCTGCAATCAGATTTCAAAGAATACGTAATGACCACCC
ACGTCCAAGGAGCCATTTCATCACCAAGCATCGCAAACTTCGCTCTGAAA
CTATGTGCAAGTGACAATGAAGCACAGTTCGATCAAGAAACAGCAGACAC
GCTTCGACAGAACCTCTATGTTGACGACGTACTGAAATCATATCCAGATG
ACTCACAAGCAATCAAAGGCATTCGAAAGTCAATCGACATGTGTGCTGCT
GGAGGATTCAAGTTAACGAAAGTCGTATCCAATTCAAGAGAAGTTCTGAA
GTCAATCAACCCTACAAAACGTGGAAAGAGTATCAAAGAGCTTGATTTGA
CAACCGACATCCTACCAGTCGACAGGGCCCTCGGTGTACATTGGTGCATC
GAAAACGACAGTCTTGGCTTTAGAGTCGTATTGAAAGACAAACCAGCGAC
ACGTCGAGGCATCCTATCAACCATAAGCTCAATCTACG

Coding sequence (CDS) from alignment at sc0000168:510982..511469

>TCONS_00013546 ID=TCONS_00013546|Name=TCONS_00013546|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000168:510982..511469 (Clytia hemisphaerica)
CCAGATGGAGATCTGCAATCAGATTTCAAAGAATACGTAATGACCACCCA
CGTCCAAGGAGCCATTTCATCACCAAGCATCGCAAACTTCGCTCTGAAAC
TATGTGCAAGTGACAATGAAGCACAGTTCGATCAAGAAACAGCAGACACG
CTTCGACAGAACCTCTATGTTGACGACGTACTGAAATCATATCCAGATGA
CTCACAAGCAATCAAAGGCATTCGAAAGTCAATCGACATGTGTGCTGCTG
GAGGATTCAAGTTAACGAAAGTCGTATCCAATTCAAGAGAAGTTCTGAAG
TCAATCAACCCTACAAAACGTGGAAAGAGTATCAAAGAGCTTGATTTGAC
AACCGACATCCTACCAGTCGACAGGGCCCTCGGTGTACATTGGTGCATCG
AAAACGACAGTCTTGGCTTTAGAGTCGTATTGAAAGACAAACCAGCGACA
CGTCGAGGCATCCTATCAACCATAAGCTCAATCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007573XLOC_007573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013546-proteinTCONS_00013546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013546-exon-sc0000168-1491911889:510982..511469TCONS_00013546-exon-sc0000168-1491911889:510982..511469Clytia hemisphaericaexon
TCONS_00013546-exon-sc0000168-1510915933:510982..511469TCONS_00013546-exon-sc0000168-1510915933:510982..511469Clytia hemisphaericaexon
TCONS_00013546-exon-sc0000168-1575043694:510982..511469TCONS_00013546-exon-sc0000168-1575043694:510982..511469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:510982..511469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95711	1.6562	0.79088	0.547996	0	0	0	0	0	0	0	0	0.779542	0.675042	0.0867891	0.944692	0.190918	0	0	0	0	0	0	0	0	0	0.141109	0	0.141138	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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