TCONS_00013534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013534
Unique NameTCONS_00013534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013534 ID=TCONS_00013534|Name=TCONS_00013534|organism=Clytia hemisphaerica|type=transcript|length=333bp
GCCCGTTTTAAGTAAAAACTGGCGAAGTCTGATTTCGTTTTGATAACTCA
AATTgttcaaatatttttgcaaaatgttCCCTCATTAATTTCAGAGTCTT
TCGATTAACCATGTATACCATGAAAATCCAAACTCCACGTAACGAtctca
acaaaacaaaaaataatccaAATGTCGAATTGAAAATCTGTTGGTTTTCT
GTCAAACGATCACTTTTGATTTGAATTAATCCCAATAATTCAGTTGTCCC
CAAAATGAGCAACAATTTGATTCCAATTTTCAACAAATCATTATCTTTCT
TTGAATCTCGGTTCAATGTTTGTTCAACTTCCG
Run BLAST on NCBI

protein sequence of TCONS_00013534-protein

>TCONS_00013534-protein ID=TCONS_00013534-protein|Name=TCONS_00013534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
EVEQTLNRDSKKDNDLLKIGIKLLLILGTTELLGLIQIKSDRLTENQQIF
NSTFGLFFVLLRSLRGVWIFMVYMVNRKTLKLMREHFAKIFEQFELSKRN
QTSPVFT
Run BLAST on NCBI

transcript from alignment at sc0000168:325876..326208

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013534 ID=TCONS_00013534|Name=TCONS_00013534|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0000168:325876..326208 (Clytia hemisphaerica)
CGGAAGTTGAACAAACATTGAACCGAGATTCAAAGAAAGATAATGATTTG
TTGAAAATTGGAATCAAATTGTTGCTCATTTTGGGGACAACTGAATTATT
GGGATTAATTCAAATCAAAAGTGATCGTTTGACAGAAAACCAACAGATTT
TCAATTCGACATTtggattattttttgttttgttgagaTCGTTACGTGGA
GTTTGGATTTTCATGGTATACATGGTTAATCGAAAGACTCTGAAATTAAT
GAGGGaacattttgcaaaaatatttgaacAATTTGAGTTATCAAAACGAA
ATCAGACTTCGCCAGTTTTTACTTAAAACGGGC

Coding sequence (CDS) from alignment at sc0000168:325876..326208

>TCONS_00013534 ID=TCONS_00013534|Name=TCONS_00013534|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000168:325876..326208 (Clytia hemisphaerica)
GAAGTTGAACAAACATTGAACCGAGATTCAAAGAAAGATAATGATTTGTT
GAAAATTGGAATCAAATTGTTGCTCATTTTGGGGACAACTGAATTATTGG
GATTAATTCAAATCAAAAGTGATCGTTTGACAGAAAACCAACAGATTTTC
AATTCGACATTtggattattttttgttttgttgagaTCGTTACGTGGAGT
TTGGATTTTCATGGTATACATGGTTAATCGAAAGACTCTGAAATTAATGA
GGGaacattttgcaaaaatatttgaacAATTTGAGTTATCAAAACGAAAT
CAGACTTCGCCAGTTTTTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007561XLOC_007561Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013534-proteinTCONS_00013534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013534-exon-sc0000168-1491911889:325876..326208TCONS_00013534-exon-sc0000168-1491911889:325876..326208Clytia hemisphaericaexon
TCONS_00013534-exon-sc0000168-1510915933:325876..326208TCONS_00013534-exon-sc0000168-1510915933:325876..326208Clytia hemisphaericaexon
TCONS_00013534-exon-sc0000168-1575043694:325876..326208TCONS_00013534-exon-sc0000168-1575043694:325876..326208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:325876..326208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286105	0.278998	0.323943	1.58464	0	0	1.47133	0	0.241095	0.298635	0	0.571633	1.90279	1.77846	1.13722	0	0	0.220141	1.52068	1.59128	0.829868	0.40478	0	0	0	0.548299	0	0	0	0.647075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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