TCONS_00013519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013519
Unique NameTCONS_00013519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013519 ID=TCONS_00013519|Name=TCONS_00013519|organism=Clytia hemisphaerica|type=transcript|length=1705bp
GGGCGAACAAACGAACAATTttgtaaatgaaaatgaaaaagaacaaaaga
aggtAACAAATAGAAGAAGATttcataagaaaataaagatggcTGCGAAT
GACATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCT
TACCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACGTACG
CTCTCTATAAAGATATTCGTTCACCCTCACGTCACATTATTGTTTGTATA
AGCATAGCTGATATGTTTCAAGCAATGGCTAACTTATACTCTGCTTATTT
TGTAAACCAAAAGGATGAACATTTTATGGAAAATTGTATAATCCAAAGTT
TTGTTGGGTCAACAGCTATCAATTGTTCCTTTATGTGGACTATGATGCTA
GccatttttctctttatctcATTGGACAGAGAGAAGCCATCTTTAGCCAT
TCGATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTAT
TCATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGAT
TCAGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGCTCATGCAAC
ATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACATCG
TTATTATAGTGCTTTatactaaactaaaatggcatcTTCAACGAAAGATT
CGAAAATTTGAACGTAGTGAATCATTCAACGAAAACTTGACACGTTTCTC
ACTTAAAGCAGCCAAACAGGTGGACAAAAAGATCATTCTAGTACCTATTG
TTTACATATTGTTACGCATTTGGGGTACGGTGCGTTTCTTCATGTTTATA
GCTGGTACGGATGATAAGAAATATAGAGTTGTAGCTGACGTCTTCATAGT
TTTACAATTATTTGGTGATAACTTGGTTGGATTTGCAAACTGTGTATTGT
TTTGTTTCCTAACAGTGAAAATTCGAAGACATTTAAAAAGTTCGTTGTCT
CGAATGTACATCAAATGTCGGACATGTTACCGGCCAGACGAGTTTAGTTA
TATGGATATTTCTTCGGATGGAGAATTAAGTGAAGATATGTCACTTTCTT
CTACATGAtacatattcaaaatgaagtcaTTTTTACTATCTGATAAAGGT
GGAAATGTGGAAATTTGCTCCAAATTTGAATACGCACTATAAAtaaatat
gaatatttttatttgcatTTTTGGATACACTTTTGTTACGATAGATTATC
GTGTTCACTTTATTATGACTACGTATTATATTTTACAGAGAccattttta
tattataaacAGTTTGGAATTTTTAACCCTTTCAACCCAAAAGCTCTTTA
TGAGGTTTTTTAAAAACACTATGATCTGAATATGAGATATATCCGGAAGT
CATCATTGAGAACTTAGAACTGAAAGGGTGAAACGAAAAATTTTGTGtag
aatttttataattttgtaaaTGTTATAAAAGTTCACTAATCTAACAGCAC
TAATTGATACTAATTTAAAAAgtcataatttatttatttaaaatccTGGT
CTTGCTGTCGCCTAAACTAAAGGCAACCCTGTGTCACAGAACCGTTTGGA
CCCCAGCCccatttggcaaaaatttcgtctctggtggtggaaaaataccc
tagaatttcagccccactgggaaattcaGTGTTTAAAAATTGCGCTTCAA
AACcg
Run BLAST on NCBI

transcript from alignment at sc0000168:449803..453244-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013519 ID=TCONS_00013519|Name=TCONS_00013519|organism=Clytia hemisphaerica|type=transcript|length=3442bp|location=Sequence derived from alignment at sc0000168:449803..453244- (Clytia hemisphaerica)
GGGCGAACAAACGAACAATTTTGTAAATGAAAATGAAAAAGAACAAAAGA
AGGTAACAAATAGAAGAAGATTTCATAAGAAAATAAAGATGGCTGCGAAT
GACATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCT
TACCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACGTACG
CTCTCTATAAAGATATTCGTTCACCCTCACGTCACATTATTGTTTGTATA
AGCATAGCTGATATGTTTCAAGCAATGGCTAACTTATACTCTGCTTATTT
TGTAAACCAAAAGGATGAACATTTTATGGAAAATTGTATAATCCAAAGTT
TTGTTGGGTCAACAGCTATCAATTGTTCCTTTATGTGGACTATGATGCTA
GCCATTTTTCTCTTTATCTCATTGGACAGAGAGAAGCCATCTTTAGCCAT
TCGATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTAT
TCATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGAT
TCAGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGGTATCATATT
TATTTTACAATCTTTATTCATTTTAAGAATATTCCCAGAATCTCCCAGCT
GCATAGGATAGTTTGTTGAGCGGTTAACAGACAAATAAAAAAATTTGTCG
GTGGGAAGGTACTGGCTAGTATGAAGGCATATGCGCTTTAAATCTTAAGT
GAAGAAATAGCCTGATTCTAATTGCTCCAAGTGAAATTTTTTTACCAATC
ATCAGGTGCTCTCCCAAAAGATAGATTTTTCTTCTGAGTGCAAACTAACT
TCTTTCTGAATTCGATTTTACTAGGTTGGGGGTTTTTTTTGGTTGAGTTT
ATCTCTACCCAAATATTATATTAATTCTTTTTTTTTGTCTAGCTCATGCA
ACATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACAT
CGTTATTATAGTGCTTTATACTAAACTAAAATGGCATCTTCAACGAAAGG
TATTAAATTTAAGGGTTTTTAAACTTTCTTCAAATCTTTATGTTTGTTTT
ACTGGTAGCTTTAAGTATTTCAGAATTAATTGCCTCCTTACCGAATGATT
TAATTCTTTCTTGTTATTCAGAGGTTTGCTATCTATAATCCAGGAAATAG
TTACAGAAAAATGCTTTTAAAACCTAGTCCCTCTTATACAGTGTTCAGGT
CGCTGGAAAGTTTGTCTGTTCAAGAAAGGGAGGAGGCATCTCAGAGGAGT
TGTTTCATTCTTTTTTGCCCCTGATTGTCAGTCATTCAGCAGTTTTCGAG
TTTTCAGTCATATAGTTATGTCCTACTATTTTGTATTTGTTGTCATGAAT
GATTTTATTAATTACTTTCTACACTTTCTTATTCTAGATTCGAAAATTTG
AACGTAGTGAATCATTCAACGAAAACTTGACACGTTTCTCACTTAAAGCA
GCCAAACAGGTGGACAAAAAGATCATTCTAGTACCTATTGTTTACATATT
GTTACGCATTTGGGGTACGGTGCGTTTCTTCATGTTTATAGCTGGTACGG
ATGATAAGAAATATAGAGTTGTAGCTGACGTCTTCATAGTTTTACAAGTA
AGTGAGAGTAAAATTGCTTTCTTTTACCGTCGTCCTCAGGTACTTAGGAT
CTGGAGAAGCCAGAAACTAGCCACCCCTTTGCAGAAAAACACAAACTCAA
TGAAATCATTTTAACGGTGGTCTTAGAAGGATGTATATTTGAATGTAAGG
CCTGATTTATATGTGGGTGGGAACTTGGCAACCACCTTTTTCTTTTTCTA
CAGAACCTTAGTCTTACTTTGGTTATCTTGCTTTTTCTGTTGATTTCATA
AAGACTCTCCTGGATGACTCATCTCTTCAAATTGGATGTGATACAACCCA
ATCTTGTTTAGCTCTAGTTTAGACAATCAACTTTTCGCCCTGTCTATTCT
TATTGCGAATTGAAGTTGGCATCAGAGAGTTGGCTGTCTAAAGTCAATGC
ATTGCCCTCGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTAGTTATTT
GGTGATAACTTGGTTGGATTTGCAAACTGTGTATTGTTTTGTTTCCTAAC
AGTGAAAATTCGAAGACATTTAAAAAGTTCGTTGTCTCGAATGTACATCA
AATGTCGGACATGTTACCGGCCAGACGAGTTTAGTTATATGGATATTTCT
TCGGATGGAGAATTAAGTGAAGATATGTCACTTTCTTCTACATGATACAT
ATTCAAAATGAAGTCATTTTTACTATCTGATAAAGGTGGAAATGTGGAAA
TTTGCTCCAAATTTGAATACGCACTATAAATAAATATGAATATTTTTATT
TGCATTTTTGGATACACTTTTGTTACGATAGATTATCGTGTTCACTTTAT
TATGACTACGTATTATATTTTACAGAGACCATTTTTATATTATAAACAGT
TTGGAATTTTTAACCCTTTCAACCCAAAAGCTCTTTATGAGGTTTTTTAA
AAACACTATGATCTGAATATGAGATATATCCGGAAGTCATCATTGAGAAC
TTAGAACTGAAAGGGTGAAACGAAAAATTTTGTGTAGAATTTTTATAATT
TTGTAAATGTTATAAAAGTTCACTAATCTAACAGCACTAATTGATACTAA
TTTAAAAAGTCATAATTTATTTATTTAAAATCCTGGTCTTGCTGTCGCCT
AAACTAAAGGCAACCCTGTGTCACAGAACCGTTTGGACCCCAGCCCCATT
TGGCAAAAATTTCGTCTCTGGTGGTGGAAAAATACCCTAGAATTTCAGCC
CCACTGGGAAATTCAGTGTTTAAAAATTGCGCTTCAAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007547XLOC_007547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013519-exon-sc0000168-1575043694:452655..453244TCONS_00013519-exon-sc0000168-1575043694:452655..453244Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1575043694:452196..452302TCONS_00013519-exon-sc0000168-1575043694:452196..452302Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1575043694:451598..451807TCONS_00013519-exon-sc0000168-1575043694:451598..451807Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1575043694:449803..450600TCONS_00013519-exon-sc0000168-1575043694:449803..450600Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1510915933:452655..453244TCONS_00013519-exon-sc0000168-1510915933:452655..453244Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1510915933:452196..452302TCONS_00013519-exon-sc0000168-1510915933:452196..452302Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1510915933:451598..451807TCONS_00013519-exon-sc0000168-1510915933:451598..451807Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1510915933:449803..450600TCONS_00013519-exon-sc0000168-1510915933:449803..450600Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1491911889:452655..453244TCONS_00013519-exon-sc0000168-1491911889:452655..453244Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1491911889:452196..452302TCONS_00013519-exon-sc0000168-1491911889:452196..452302Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1491911889:451598..451807TCONS_00013519-exon-sc0000168-1491911889:451598..451807Clytia hemisphaericaexon
TCONS_00013519-exon-sc0000168-1491911889:449803..450600TCONS_00013519-exon-sc0000168-1491911889:449803..450600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:449803..453244 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.610916	3.32493	1.54208	1.48653e-09	0.000311089	0.243449	0.485139	0.0665389	0.861767	0.713328	0.215878	1.08611	0.12776	0.922799	1.89078	2.51493	1.18814	3.64261	0.653693	1.04271	3.68373	2.72914	5.35978	3.96093	0.819312	2.51185	11.476	7.99182	2.70163	5.84533
Blast
[Close]
BLAST of TCONS_00013519 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.055e-31
Identity = 73/220 (33.18%), Postives = 122/220 (55.45%), Query Frame = 2 
Query:  332 NCIIQSFVGSTAINCSFMWTMMLAIFLFISLDRE-KPSLAIRLIHPW-FHLISWLIPLFINLLALFLRKLGDNYDSASAGWCWIRMDDAHATLWMFLDGKGLELLTYIVIIVLYTKLKWHLQRKIRKFERSESFNENLTRFSLKAAKQVDKKIILVPIVYILLRIWGTVRFFMFIAGTDDKKYRVVADVFIVLQLFGDNLVGFANCVLFCFLTVKIRRHL 985
            +C++Q  + + A   SF WT+ +A++L++S+ R  +     RL+  W FH++SW +PL I + A+ L+K+G +    S GWCWI ++     LWM L GK  E+L Y+++ +LY  ++ H+ R                R  L+ +   DKK++L+P+++I LR+W TVRF + + G+      V   V +VL   G+   G ANC++F   T  +R  L
Sbjct:   78 DCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLL--WAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRL-LRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSPA----VQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRL 290
The following BLAST results are available for this feature:
BLAST of TCONS_00013519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1572.055e-3133.18G-protein coupled receptor 157 OS=Homo sapiens GN=... [more]
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