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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013416 ID=TCONS_00013416|Name=TCONS_00013416|organism=Clytia hemisphaerica|type=transcript|length=1706bpRun BLAST on NCBI protein sequence of TCONS_00013416-protein >TCONS_00013416-protein ID=TCONS_00013416-protein|Name=TCONS_00013416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MNMADSLSQLFEFVDNNKKSYIEGLRTWVEIESVSAEPARRPYVFQMMEQRun BLAST on NCBI transcript from alignment at sc0000167:157973..165830- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013416 ID=TCONS_00013416|Name=TCONS_00013416|organism=Clytia hemisphaerica|type=transcript|length=7858bp|location=Sequence derived from alignment at sc0000167:157973..165830- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:157973..165830- >TCONS_00013416 ID=TCONS_00013416|Name=TCONS_00013416|organism=Clytia hemisphaerica|type=CDS|length=18798bp|location=Sequence derived from alignment at sc0000167:157973..165830- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013416 vs. Swiss-Prot (Human)
Match: CNDP2 (Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2) HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0 Identity = 281/475 (59.16%), Postives = 348/475 (73.26%), Query Frame = 2
Query: 47 SLSQLFEFVDNNKKSYIEGLRTWVEIESVSAEPARRPYVFQMMEQCKKQLEDLGAKIELAENPLNKGKKEGDLMLPRIILGNLGDDPKKKTLLVYGHLDVQPANRSDGWDYEPFKLTETEDGKLYGRGSTDDKGPVLGWINVLSAYQALKMEIPVNLKFCFEGMEESGSEGLDQLIDERKSTFFSGVDYCCISDNYWLGKSTPCVTYGLRGICYYHVKMRCAGADLHSGVFGGTVHEAMIDLVHLLSKIVNQRGRILIPGVNELVDKLTPEEDALYAPIDFDPEEYRQDIGADKLLHHGGDCKKKTLQHRWRYPSLSIHGFQNAFDGEGCKTVIPKEVIGKFSIRLVPSQTPEMIDKLVEDYLKKVHAESGSANRLTVISEHGGKPWLSDYTDDNFKSGRNAMKRVFGKEPDLTREGGSIPVTLSLQNATEKSVMLLPIGASDDGAHSQNEKINVSNYINGIKVLGAYIDELGKL 1471
+L+ LF+++D N+ YI+ L WV I+SVSA P +R + +MME ++ LG +EL + K ++ LP I+LG LG DP+KKT+ +YGHLDVQPA DGWD EPF L E DGKLYGRGSTDDKGPV GWIN L AYQ EIPVN++FC EGMEESGSEGLD+LI RK TFF VDY CISDNYWLGK PC+TYGLRGICY+ +++ C+ DLHSGV+GG+VHEAM DL+ L+ +V++RG ILIPG+NE V +T EE LY IDFD EE+ +D+GA LLH KK L HRWRYPSLS+HG + AF G G KTVIP++V+GKFSIRLVP+ TPE++ + V YL K AE S N V HGGKPW+SD++ ++ +GR AMK VFG EPDLTREGGSIPVTL+ Q AT K+VMLLP+G++DDGAHSQNEK+N NYI G K+L AY+ E+ +L
Sbjct: 3 ALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE-RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLH---SHKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQL 473 The following BLAST results are available for this feature:
BLAST of TCONS_00013416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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