TCONS_00013411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013411
Unique NameTCONS_00013411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013411 ID=TCONS_00013411|Name=TCONS_00013411|organism=Clytia hemisphaerica|type=transcript|length=3094bp
GAAAACTTAAATGTTCATGCCTTATTGAGTaccagaaaaacacaaactcT
TTATCAAAATTTACACCAGAAGATTACTCAAGCGATAAAACACAATAAAG
AAGAGTAAAACTCCAAATCGTAGAAGTTCCAATCGtttaaaattgaatta
attTTTGTAAGGTGGTGATAATTTGTTGTGACTCCAATAAAAAGATACAG
gCATGGTTTACTAAGATGAAGCAACAACACCAACAATGTCATCAACTTCA
ATAACATTAGATACTTCATCACACCAACTCAATCGCTCATTGGTCGATAT
CATTTGTGATCCACCAAACTTCCAACCACCAAACCTCAACAACCAGAACA
CGCCAACGTCAAGACAACAAAGTCCTCAACATTGTTTACGTGATATCAAT
CTCACATGCGAGCTCtgccaaaaatatttctataaaCCACGCATCTTATC
CTGTCTGCATACCTTTTGTGAAGAGNTACATGTGAGCTCTGCCAAAAATA
TTTCTACAAACCACGCATCTTATCCTGTCTGCATACCTTCTGTGAAGAGT
GCTTATCAAACAACATCACCTATGTTAAGATACCAGGCTATGAGGGAACA
CAGGCCATCATTAAATGCTTAATTTGTGGTGAATTTACAAGCTTTCCAGA
GAAGAATCTAACCTCAATGTTACCATACAATTTCTTTGCAAATAATGCTA
TAGACTATCTCATGatacaaagtcaaaatgaaaaagCAATCCAATGTACA
GCATGCTCTGATAAAACAGATGCTATCTCCAGATGTGTTGAATGTTCTGA
ATTTCTATGTTTGTGTTGTGTGACAGCTCACAGGAGAATCAGAGTAACGA
AAGATCACAAAATCATCCCGTTGGATACTTTGAGATACGACCAAAGCATG
GTTCATAGGCCAGTCTATTGCCCAACACACTCACCAGAGGTTTTTACCTA
TTTTTGTGAAGTTTGTAAAGAACTGGTTTGTAAGGATTGTACCATTTTAG
AACATCGTGGACATAAATATGAAAGATTGAGTGAGGCATTGGAGAATCAA
AAACCATCAGTCATGAAACTATTGGCAACCAACGAGAAAGAAAAAATCCC
GCCCATAGCGCGCGCACTTGATGATGTCCAAGATATGGCCGCCAGATTAC
ACGCGCGGACGATTGCAACAAAACAAGCGGTCCGCTCGTGTACTGAACGT
TGTATAAGAGAGATCGAAGAACGTTGTAAGATTTTGCTTTCAAATATTGA
TAATTTGTATCGAGAGAAGAGCGACGTGTTACATAAACAACAGGAGGTAT
TACAAGaaaaactGATGAAAAACAAGGCAGCGAATCAATTTGTGAACTAT
GCATTCCAACACGGAAGCGAGGCGGAAATATTTGAATTGCTAGACCTGAT
GAAAACTAGACTGACCGATCTCAATGATGAGGACTTAGGCTATGATGAGC
CTgaagaaaatgacgtcattgatcACCAGTTTGATTCCAAAGCTGTCGAA
CACATAGCTGAAAACCTCGGTAAAATTGCCACATCTAGTGTTTTCTTATC
ATACACAAAACTCTATGGACCAGGTGTGCGAACAGCCAAAGCAGAGATCG
AAACATTTTTTATGATAGAAGTTTTTGATCGAAAGAAGGAGCGCTGTTGT
GATCATTTCTCACCGGGCGCCATTAAAGTTAAAATTCACGCACCAGAAGG
GTTCTTAATCAACAACAAGATCACTGATAATCGTGATGGTACTTTTACTG
TTCGGTATACTCCTGTCACGAAAGGTCGATATGATGTTACCGTCAAAATC
AGGGGCAAATCATTTCCAAAGAATCAGTTCTCTGTCAGAGTATTCGAAGG
CATTGATTATCTCAAGATCGGCAGCAATTTTTTATGTTTCGGTGAGCGTG
GCGTCAAAAACGGTGAATTTAAACAACCCTATGGAATTGCAACAAATTCA
CAAGGTCAAATCTACGTGACCGACAAAACTAACAATCGAGTACAAATCTT
CGATAAAttcggcacctttctatcagAGTTCGGATCACGTGGTACAAAAC
AAGGTCAATTTTCAGGACCGGAAGGAATAGCAGTTGATCAAGCAGGCATG
ATCTTCGTAGCTGATACAGAAAATCATCGAATACAAGCTTTCAATGCAAA
TGGAACATATCATTCAAAGTTTGGTACAAAAGGTAGTGAAGAAGGAGAGC
TTCTCAGTCCATGCGGTATTGCTATTGATAAGATCGGTAACATATGTGTG
GCTGATCGAGGCAACCATCGAGTCCAAGTATTCACACCAGAGGGTAAAAG
TTTATTATCATTTGGTTCCTATGGTGACCAATACGGACAATTAAATTCAC
CGAGTTTTCTCGCCATTAACAATGATAATTGGTTCATTGTTGCCGACAAT
GGGAACAATAGAATCGTTTGTTATGATAGCAATGGGTTGTATGCTCAAGA
GACTGGTGCCAAGGGTTCGGACCCAGGCGAGTTTTCTAAACCAAATGGTA
TTGTGGTCGATCAAGAAGGTTTTATCATAGTCTCTGATACAGGAAATAAC
AGGGTGCAGGTGTTAACGCCAGATTTGAAATATTTCAGTCAATTTGGTTG
CCATGGTAATAATGATGTTGAATTTAAACAGTTAACTGATGTAGCTTTAA
CTCAAGATGGTAGAGTTGCAGTGAGCGATACAAACAATTACAGGGTACAA
GTGTTCTAGTATTATTCATTAATTTTaaaaaaaattaatattggTATATT
TTATGCGTATGGCTTTTGTATACTATTGaatataaaaacaattaaaaata
actGAAATAAAGGATTCTTTGTAAATATCTAATAAAGTTATTAGTATCTT
AAAAAATTTCGTATTTGCAATctataaacattttttataagcaaccgaat
TGCTAAGGCTCCAGCTCTGAAAGTAGCCACAAAATTAAGCAACTTGGTTT
ATTAATCTTAGTCCTGAAACGAATATGAACAAAGAagtcatcaaaaatga
aaattgacatCGAAATACCTAACAGAGGTGTTATAATATTACTTTATTTG
AGGAGTTTCAGGCATAATATGAGgtgaaaagtgaaatttttcgg
Run BLAST on NCBI

transcript from alignment at sc0000167:82405..89058-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013411 ID=TCONS_00013411|Name=TCONS_00013411|organism=Clytia hemisphaerica|type=transcript|length=6654bp|location=Sequence derived from alignment at sc0000167:82405..89058- (Clytia hemisphaerica)
GAAAACTTAAATGTTCATGCCTTATTGAGTACCAGAAAAACACAAACTCT
TTATCAAAATTTACACCAGAAGATTACTCAAGCGATAAAACACAATAAAG
AAGAGTAAAACTCCAAATCGTAGAAGTTCCAATCGTTTAAAATTGAATTA
ATTTTTGTAAGGTGGTGATAATTTGTTGTGACTCCAATAAAAAGATACAG
GTAAGAAATTATGTATATCAAGTAAATGTGTACGAAAATTGACCATAGGA
TTCAAAATCTACACCTAAGTTACCACATGTTGGGACTCCGTCTAACCCCC
CTACAATTTTTCTTTATAAGAACTAGTAACTTTCAGACTAGGCTTGACTG
TTCTCATGTTTTTTTTTGCACTTTGGCCTAAAATAGTTCTCTTCCAGTTA
TTTTCTAGGGAAAAAATCTTGTAGATGGTTTTGGTTTAAAATCCATTTTC
AATTCAATTTGCTTAAAATTCAGTTCTTCTAGGCTCGCTCTCGGCATTGT
TCCTAAAATTCAGTTGTTCTAGGCTCGCTCGCGGCATTGTTCCTAAATTG
TTCTTTTTTCGGTATTTTTCTGCCTTTTTAAACTTCCTTTATGAAAAGTA
CAGTAGTTGCTTATCCAAAGTCCAATTTTATGCTTTTATCATTCGAAACC
ATTAGTGAATTCTGCCTTCAGTTTGCTTCTAAGAAATTACTGCTGATGTA
CAGTAAGCAGGAGGAAGCAGAAACTTTATTAAGCAATGATGTAATGATTT
ACGAACCTAATTAACTAACTGTTGTGATAAACAGTTAGAAAAACGATGTG
ATATGTTATACAGAGAGTGCAGATGGTGAAATACAGGAGACGTTTGCATA
AAACCGTTTTAATCTAAAGTTGAAATTTTGATGTTGATATAAAGAATGTT
GTAGAATATGGTGAGTTATGAAAAGATAAAATGTTATTCCCATATTTATT
ATGAACAGGGATTCAATTTCTTTTGTTTTCAAGTCAAAAAAATTCAGTGG
GATTAAAAAAATAGCATGATGTTTTGCGGTGAGAATTGGTTTATTTGAAT
ATTTTCAGTGGGGACAAAAGTTGGAGTATAATTTTCCATCAGGGACGATA
TTTTAACCAAATTTTTCAGTGGGAAGTGTACCCAGTGGGTTTGTGAAAAG
GGGATGTTGTAGATTTTAGATTTAATCGTTAGGTCAAGTTTCTTTCCGCG
TTCTTTCTAAAGTATTTTAGTTATAAACCACGAGCTTTTACAATGGCTTT
TTCTACAAGGTAAATCTTGTGAGAAATGAAAAACAAATATTAACTTTCAA
GAAAAATAAATATAAAAATTCTTCAATCGTCTTTCAAAAACATAAAATAC
AACGAGTGGAAGTTTCTTAAAGCGTGAAAAATTAGATTTGTGTTGAGGCT
AAGAGATTTAGAGGGGCCCTTTAGATAACAATCGTTCAGGACACACTGGT
TGGAAATAACTACACGTTTCTATAAGATTAATTTCATAAAAGCATGATGC
TCAATTTTAGCCAAAATCTCAGAATATATTACGAACAAATGCTAACCTTA
GAGTCTAGAAATGGCTAAGAAAATTTTGAGTCCATTTTAAGTCAATAAGT
TAATAAAAGTGTATAAACAGTTAGCATACTAAGATTAAAATTAAGAGTAT
TTTAAGAACACTCAAGCCTGATTGATAATCACAAAAAAATAAGAACGCTA
GACTGGGACGCCAGTCAGGCTTGCACGATATCACATAGATAAATTGAGCG
TATTGGTAAGCGATAAGGAGGAAAATCAGTCGGCAGGAGGAGCTAAAAAT
GTTCATCAGCAACCTCTCACTAGCTTTTGCTCTCGCTCTCCTGCGCAGCT
TCTATTTTAGCAAACACCCACTGCCTTCATGTTTCCGCCGATTAGATAAC
AGACTAGTTAGTTAGTCTATAAGAACAAATGAACTATTAGTTCTTATAAA
TTGACATCTATGTTTTTTTTCATTTAACAGGCATGGTTTACTAAGATGAA
GCAACAACACCAACAATGTCATCAACTTCAATAACATTAGATACTTCATC
ACACCAACTCAATCGCTCATTGGTCGATATCATTTGTGATCCACCAAACT
TCCAACCACCAAACCTCAACAACCAGAACACGCCAACGTCAAGACAACAA
AGTCCTCAACATTGTTTACGTGATATCAATCTCACATGCGAGCTCTGCCA
AAAATATTTCTATAAACCACGCATCTTATCCTGTCTGCATACCTTTTGTG
AAGAGNTACATGTGAGCTCTGCCAAAAATATTTCTACAAACCACGCATCT
TATCCTGTCTGCATACCTTCTGTGAAGAGTGCTTATCAAACAACATCACC
TATGTTAAGATACCAGGCTATGAGGGAACACAGGCCATCATTAAATGCTT
AATTTGTGGTGAATTTACAAGCTTTCCAGAGAAGAATCTAACCTCAATGT
TACCATACAATTTCTTTGCAAATAATGCTATAGACTATCTCATGATACAA
AGTCAAAATGAAAAAGCAATCCAATGTACAGCATGCTCTGATAAAACAGA
TGCTATCTCCAGATGTGTTGAATGTTCTGAATTTCTATGTTTGTGTTGTG
TGACAGCTCACAGGAGAATCAGAGTAACGAAAGATCACAAAATCATCCCG
TTGGATACTTTGAGATACGACCAAAGCATGGTTCATAGGCCAGTCTATTG
CCCAACACACTCACCAGAGGTTTTTACCTATTTTTGTGAAGTTTGTAAAG
AACTGGTTTGTAAGGATTGTACCATTTTAGAACATCGTGGACATAAATAT
GAAAGTAAGTAGCCGGTTTGGTTTGCTTTAATAATATATTTCATTACACT
TTAAGAGGGAAATTCTGGAAAATGGGCCAATTCGACAATATTTCTCTTTC
CTTTAAGATTAGGCCTTGGCAAAAAAATCTATTTATGTTCCTTTTTTACA
TGCCTATCTTAGACTGGTAGATCTGCAAGACGTATGCGTAAATAATTTCA
GAATGTTATAAACCATTTCTTGAATTCAGGATTGAGTGAGGCATTGGAGA
ATCAAAAACCATCAGTCATGAAACTATTGGCAACCAACGAGAAAGAAAAA
ATCCCGCCCATAGCGCGCGCACTTGATGATGTCCAAGATATGGCCGCCAG
ATTACACGCGCGGACGATTGCAACAAAACAAGCGGTCCGCTCGTGTACTG
AACGTTGTATAAGAGAGATCGAAGAACGTTGTAAGATTTTGCTTTCAAAT
ATTGATAATTTGTATCGAGAGAAGAGCGACGTGTTACATAAACAACAGGA
GGTATTACAAGGTAAGATAAAGTTGACAATTTAGCCTTTTAAATAGAATT
ACATGGCAACTAAACTTGTGCCTAGTTCTCGATTTTTTCAAAACAGATTT
TTTCAGAGAGGTTGATTTTTAGTGTTAAAGAATAATTGGAGGTCTCAAAG
AAGATAATCATGTTCGTAATCATTTCAAGGCGAGACCCGAGGTGGTTCGT
TACTTTAAAAGCCTATTTGTATCTGTCACGGGAAGTTTTAATCTTTTTCC
GTTCTTTTAATAACTTTGAAAAAGTAATTTCTTTGTTTGGAGACAAGTCT
GAGGATGTACATGATAAATTATTTCTCTTAATTTTTTTTTGCAGAAAAAC
TGATGAAAAACAAGGCAGCGAATCAATTTGTGAACTATGCATTCCAACAC
GGAAGCGAGGCGGAAATATTTGAATTGCTAGACCTGATGAAAACTAGACT
GACCGATCTCAATGATGAGGACTTAGGCTATGATGAGCCTGAAGAAAATG
ACGTCATTGATCACCAGTTTGATTCCAAAGCTGTCGAACACATAGCTGAA
AACCTCGGTAAAATTGCCACATCTAGTGTTTTCTTATCATACACAAAACT
CTATGGACCAGGTGTGCGAACAGCCAAAGCAGAGATCGAAACATTTTTTA
TGATAGAAGTTTTTGATCGAAAGAAGGAGCGCTGTTGTGATCATTTCTCA
CCGGGCGCCATTAAAGTTAAAATTCACGCACCAGAAGGGTTCTTAATCAA
CAACAAGATCACTGATAATCGTGATGGTACTTTTACTGTTCGGTATACTC
CTGTCACGAAAGGTCGATATGATGTTACCGTCAAAATCAGGGGCAAATCA
TTTCCAAAGAATCAGTTCTCTGTCAGAGTATTCGAAGGCATTGATTATCT
CAAGGTAAGCTTTTGTATATAATTCTAATATTAGAGAATCACGTTATATC
TAGCGAACGCTACCGCGGAACAATCTTAAGGAACTGCTCACTAATGAAAA
GCTTTTTTTTGCTATTTAGGTTGTAGATTAAAATATACAAACATAGATGA
AAGTTATAATTAAAGATCTAGTCAAAAACCTTGAAGTTTTGGGAAATGCT
GCGAGCTTGAAAAACCACTATATACTTATTAATTAAGATTTGAAGTGGGG
TTTCAAGCTTACAGCATTACCGAAAAATTGAATACACTCTTCTCGAGATG
CATAAATTTATTGATGTCCTCGTTTTCAAACAGATTTCATTGCTATAAAA
TTACATATTCACAATGATAATTGTGTTGTTTACACCTCATGAGACATTTT
GAATTTCAAGTACTTTTGTTTTATAGTTAATGTTTGCCTTTTGGGAATTT
AAATTGGTTTAAATGTATAATCTCATAGCAATGAAATCTGTTTGAAAACG
AGGACAGCAATAAATTTATGCATCTCGAGAAGAGTGTATTGGCTTAAGTG
GCTTAATTATTCAGAGCTATTGAAGAATATCTCACACTCGGAGTTTCATG
ACTCTGTGCCAATCTCCGGTGAAAATGAGCTCAAATCAACATATAACTAT
GAGAAAATTAATCAATTGAACTAAATTAGAGTTTCCTACTTTCAGATCGG
CAGCAATTTTTTATGTTTCGGTGAGCGTGGCGTCAAAAACGGTGAATTTA
AACAACCCTATGGAATTGCAACAAATTCACAAGGTCAAATCTACGTGACC
GACAAAACTAACAATCGAGTACAAATCTTCGATAAATTCGGCACCTTTCT
ATCAGAGTTCGGATCACGTGGTACAAAACAAGGTCAATTTTCAGGACCGG
AAGGAATAGCAGTTGATCAAGCAGGCATGATCTTCGTAGCTGATACAGAA
AATCATCGAATACAAGCTTTCAATGCAAATGGAACATATCATTCAAAGTT
TGGTACAAAAGGTATAAGATATATTAGTATCATGTTTCATTGATATTTAG
TTTTTAGTTCCCTTCATAAATGAGGCTGTCTTTCTTCCTACAATATTTGA
TTTTTAAACCTGATTTCCGAGCAGATTATGATTACTTCGCACTGGCACGT
TTGCACGATAAAGGACATGGCTCTCGAAAAAGAATCTGCCCAGGTTGGAG
CACAGCTTTGATATTTTTCATCAAGATTTGGATTGAATATCAAATGTGCT
TTTGAGGGCGGTGATTTTCTAAAGGAAAATACATGCACCAAAATCAAACA
TCAATCATTAGAACCTAGTCGCTTTCGTATTCGTTTCAAAGCAAAATACA
GCGCAGTTTTGATTATTTTGGCTGAACAACCAGATCAGAACGTCAAATTT
GCCATATCCCTTTATAACACAGCGCGGTATGCAGAGAATAAATGATCTGT
TAATAAATCTTTAAACACGCAATTTCACAAGTTACTCTCGTAATGTTTCA
ACAAAGGAAAAAATATACCTTTTTAAAATTTCATTCCATTAGGTAGTGAA
GAAGGAGAGCTTCTCAGTCCATGCGGTATTGCTATTGATAAGATCGGTAA
CATATGTGTGGCTGATCGAGGCAACCATCGAGTCCAAGTATTCACACCAG
AGGGTAAAAGTTTATTATCATTTGGTTCCTATGGTGACCAATACGGACAA
TTAAATTCACCGAGTTTTCTCGCCATTAACAATGATAATTGGTTCATTGT
TGCCGACAATGGGAACAATAGAATCGTTTGTTATGATAGCAATGGGTTGT
ATGCTCAAGAGACTGGTGCCAAGGGTTCGGACCCAGGCGAGTTTTCTAAA
CCAAATGGTATTGTGGTCGATCAAGAAGGTTTTATCATAGTCTCTGATAC
AGGAAATAACAGGGTGCAGGTGTTAACGCCAGATTTGAAATATTTCAGTC
AATTTGGTTGCCATGGTAATAATGATGTTGAATTTAAACAGTTAACTGAT
GTAGCTTTAACTCAAGATGGTAGAGTTGCAGTGAGCGATACAAACAATTA
CAGGGTACAAGTGTTCTAGTATTATTCATTAATTTTAAAAAAAATTAATA
TTGGTATATTTTATGCGTATGGCTTTTGTATACTATTGAATATAAAAACA
ATTAAAAATAACTGAAATAAAGGATTCTTTGTAAATATCTAATAAAGTTA
TTAGTATCTTAAAAAATTTCGTATTTGCAATCTATAAACATTTTTTATAA
GCAACCGAATTGCTAAGGCTCCAGCTCTGAAAGTAGCCACAAAATTAAGC
AACTTGGTTTATTAATCTTAGTCCTGAAACGAATATGAACAAAGAAGTCA
TCAAAAATGAAAATTGACATCGAAATACCTAACAGAGGTGTTATAATATT
ACTTTATTTGAGGAGTTTCAGGCATAATATGAGGTGAAAAGTGAAATTTT
TCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007492XLOC_007492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013411-exon-sc0000167-1575043694:88859..89058TCONS_00013411-exon-sc0000167-1575043694:88859..89058Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1575043694:86255..87078TCONS_00013411-exon-sc0000167-1575043694:86255..87078Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1575043694:85748..86029TCONS_00013411-exon-sc0000167-1575043694:85748..86029Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1575043694:84855..85414TCONS_00013411-exon-sc0000167-1575043694:84855..85414Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1575043694:83848..84163TCONS_00013411-exon-sc0000167-1575043694:83848..84163Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1575043694:82405..83316TCONS_00013411-exon-sc0000167-1575043694:82405..83316Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:88859..89058TCONS_00013411-exon-sc0000167-1510915933:88859..89058Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:86255..87078TCONS_00013411-exon-sc0000167-1510915933:86255..87078Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:85748..86029TCONS_00013411-exon-sc0000167-1510915933:85748..86029Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:84855..85414TCONS_00013411-exon-sc0000167-1510915933:84855..85414Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:83848..84163TCONS_00013411-exon-sc0000167-1510915933:83848..84163Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1510915933:82405..83316TCONS_00013411-exon-sc0000167-1510915933:82405..83316Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:88859..89058TCONS_00013411-exon-sc0000167-1491911889:88859..89058Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:86255..87078TCONS_00013411-exon-sc0000167-1491911889:86255..87078Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:85748..86029TCONS_00013411-exon-sc0000167-1491911889:85748..86029Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:84855..85414TCONS_00013411-exon-sc0000167-1491911889:84855..85414Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:83848..84163TCONS_00013411-exon-sc0000167-1491911889:83848..84163Clytia hemisphaericaexon
TCONS_00013411-exon-sc0000167-1491911889:82405..83316TCONS_00013411-exon-sc0000167-1491911889:82405..83316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:82405..89058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.70283	2.70912	7.60835	7.2945	1.837	2.78554	4.99443	6.89761	5.68653	6.24	6.71969	12.7461	5.62436	7.05627	0	0.214086	2.61138	4.67641	0.919721	3.21585	6.6182	4.83388	0	0	0	0
Blast
[Close]
BLAST of TCONS_00013411 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 3.729e-99
Identity = 204/676 (30.18%), Postives = 350/676 (51.78%), Query Frame = 1 
Query:  745 CTACSDKTDAISRCVECSEFLCLCCVTAHRRIRVTKDHKI-----------------IPLDTLRYDQSMV----HRPVYCPTHSPEVFTYFCEVCKELVCKDCTILEHRGHKYERLSEALENQKPSVMKLLATNEKEKIPPIARALDDVQDMAARLHARTIATKQAVRSXXXXXXXXXXXXXXXLLSNIDNLYREKSDVLHKQQEVLQEKLMKNKAANQFVNYAFQHGSEAEIFELLDLMKTRLTDLNDEDLGYDEPEENDVIDHQFDSKAVEHIAENLGKIATSSVFLSYTKLYGPGVRTAKAEIETFFMIEVFDRKKERCCDHFSPG-AIKVKIHAPEGFLINNKITDNRDGTFTVRYTPVTKGRYDVTVKIRGKSFPKNQFSVRVFEGIDYLKIGSNFLCFGERGVKNGEFKQPYGIATNSQGQIYVTDKTNNRVQIFDKFGTFLSEFGSRGTKQGQFSGPEGIAVDQAGMIFVADTENHRIQAFNANGTYHSKFGTKGSEEGELLSPCGIAIDKIGNICVADRGNHRVQVFTPEGKSLLSFGSYGDQYGQLNSPSFLAINNDNWFIVADNGNNRIVCYDSNGLYAQETGAKGSDPGEFSKPNGIVVDQEGFIIVSDTGNNRVQVLTPDLKYFSQFGCHGNNDVEFKQLTDVALTQDGRVAVSDTNNYRVQVF 2706
            C++C +   A SRC++C E LC  CV AH+R+R+TKDH I                 +         S++     R  +C  H  EV   +C+ C   +C++CT+  H GH +  L EAL++ +   ++LLA  ++ +   I  +++  Q +A ++  +    +  V++ T R  + +EER   LL  ++ + + K+  L+ Q E L++ L K ++    V    + G   +I    D M  ++ +L        +P+E+D +      +A+    ++ G   +S  F   TK  G G++ A       F +  +D   E      S G  +   +  P+G L   +++D ++GT+ V Y P  +G + V+V +  +    + F V V  G  Y+ IG   L FG  G  +G+  +P+G++ + +G I V D++NNR+Q+F   G F  +FG+ G++ GQF  P G+A D +  I VAD +NHRIQ F   G +  KFG KG++ G+   P  +A++  G I V+D  NHR+Q+F P+G  L  +G  G  +   +SP  +A N++   +V D  N+R++    +   A+  G++G+  G+F +P G+ VDQEG IIV+D+ N+RVQ+   +  +  +FG  G+   +  + + +A+T DG + V D  N R+ VF
Sbjct:  199 CSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGR-QAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVR-SLLQPQEDDRVMFTPPDQALYLAIKSFG-FVSSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGE---PRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00013411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN413.729e-9930.18E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
back to top