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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013409 ID=TCONS_00013409|Name=TCONS_00013409|organism=Clytia hemisphaerica|type=transcript|length=2647bp
caactggCAGACTGGGGAAGCGAAACTCGTCAGCTGATCAGGGCCAAAAG
AATATGTAAAAGGGACTTCCCCTTTATTCTTAAGAACTATTAAGTAAATA
ATCTATTAAGTCCAGGAAATGTAAATATAAGAGGAGACTTACTTGTTACT
TACTTGTGTGGTTGTTGGAGCATCCTGCTTCAGatTTAACTGACATAAAA
ATGGCGCAAATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGTATG
CAGTGGAAGTAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTTCCT
CATTATCATTGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATCCTA
AAAGAATATCACATGGATGCTCAAAAGATGATCTTATTCATGGTCTTGTC
AGCTTTCATTGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAACAC
ATGGTGCAACCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGATTGG
GCTACGTTATTATGGGTGACGATGATCacaacaaatttgattttaatcat
aaaaaataaacagtcacctaaatattattatatttaCCATGCCGTTGTTT
GGCTTGGTGCTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACATAC
GGTCATGCAGGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATATAG
GTTTGGAACATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGTGTA
TCACTCTTGGCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCCCAA
ACTGGAGTCTCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAATGA
ATTGAAACGACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATATTC
CAACCTTAGCTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAACCC
AATTATGGCATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGGAGC
TGCTAATGCTATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGAACC
TAACATGGCCAATGATCAGAAATAATGTAATATTGTTGTTCAAACGTGAG
ACGCAAACGCAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACAAAC
AAGTGATTCATCAGAGCAATATCAACCGAtgccttgatttttttttggca
aaatctaATTCAGAACAGTACAGCTTCTGGTTACACGAAAtgttgttctt
atgaaaaaggtCCAGAATCAACTGAAGCCAGTAGGCGATATCAACTGATA
CCTTGATTTGCTCTGATAAAAACTGGTGATGAACAGTATCTACACTGAAA
TGACAGTGTAATCTTAAGATTTATATTATAAAGCTataatcaatatattt
tataattataataaaGGGTAGTCATAGTCAGCAAAACTCTATTGAAGTTA
GAAGTCTATTGAAGTTAGCTCTAGAAACGGTGAATTAGCCCGATTTTCTA
CTGAAGGTCTTTCTGATCTTTTTTTCGGACAATAATTGGAAAACTATTGC
CCactaaaaattttgtttcattataaGAATTTTTAAATGAGAGTAAAATA
TAAAGtatgacatttttttaaaaatcgaagaaaatttttcaagtaGGTCC
TTCTAAGAATCAACTATTCAGCAAAAAtcggtctctctaagggtcggttt
tcggaagtcccgtccgcacatacccctcatccacCAAACCTAGTACTCCC
CCGGACATCATTCCATTTCATAAACAATGAAAAGACAATACTTCGCTTCC
ACTGtaagggacaagctggagtttttacaagctctcgtttgatttggttg
gtcgttaacctgtaataaaacaattttgttactttttctaaagaacgcgt
catctctattacttcaaataaccaatcaattagtgaagtctcttAAAAAA
ACTCCAGCCCATCCCCACTGTAACGGGTATGCAGGTTTATTATTTGACTT
GTCACATGTTAACAATCTTAATATTAATAGACAAGTGTCGCTTAGCAATG
CACTTTAAGTATTTAATTCAGGACTCAAAACGTTTATAATTTCCTCTTAT
AATGATATATTTATTAACATGCAATACGGACCACTCTTTGAAAGGATCAA
CCGATTTGATATCTATAGAGTCAAATTAAACTTTCTAGACATGAGATTTT
TATCCTAAAAGGTTAAGAAATGGACCAAAACTATCCATAAACCCTGCGTT
ATGTTTTCCTTTTATGCTTTGAAACCATCTTTTTATCCTTGTGCTTTATC
CAATTTGGAAAAGCACATTTTCGCACTGATTTATACCCCTAGAAGttttt
tatttccaaatttGCTTGTAGATATTCTTCCACtgcattttttattattt
ataaaataaaaatttttttttataaaactcggtataaatattttcttgca
tttttttatattttcatttctagatAATTATtgcattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattagcATATTATTTCATATTATCCACGATTTATATTAAATTGAAAAt
gtgtatttaaaaaataatttttcagttaatCGGTAATAATAAGGCag Run BLAST on NCBI protein sequence of TCONS_00013409-protein >TCONS_00013409-protein ID=TCONS_00013409-protein|Name=TCONS_00013409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MAQIGELSLAPTRAPVCSGSSCETIDALHKTFSSLSLIGSFVVLVLILIL
KEYHMDAQKMILFMVLSAFIDSIAYLMGDAETTHGATCEAQSFLMQYFDW
ATLLWVTMITTNLILIIKNKQSPKYYYIYHAVVWLGALFFAIVPFFENTY
GHAGLWCWIKREYTGYRFGTWFGPLFFICFGMCITLGYVTYSVYQATQAQ
TGVSVATENINRSYRNELKRLAFYPLVYIILNIPTLAYRIEDASHPNKKP
NYGILVVSSIFGPSVGAANAIIFATINLGSIRNLTWPMIRNNVILLFKRE
TQTQIEHNVVLEEGPQTSDSSEQYQPMP Run BLAST on NCBI transcript from alignment at sc0000167:54013..58063- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013409 ID=TCONS_00013409|Name=TCONS_00013409|organism=Clytia hemisphaerica|type=transcript|length=4051bp|location=Sequence derived from alignment at sc0000167:54013..58063- (Clytia hemisphaerica)
CAACTGGCAGACTGGGGAAGCGAAACTCGTCAGCTGATCAGGGCCAAAAG
AATATGTAAAAGGGACTTCCCCTTTATTCTTAAGAACTATTAAGTAAATA
ATCTATTAAGTCCAGGAAATGTAAATATAAGAGGAGACTTACTTGTTACT
TACTTGTGTGGTTGTTGGAGCATCCTGCTTCAGGTAAGGTTCTTGGTGAA
CCACGCCTCTGTGTGATCAATCTGTCGAGAGAAAAAGAATCTCAGCAGAT
ATTTTTCATGTCAATTATTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGTTCTTCTTTGCATTGTTTGAGAAAGGTTGCAGGGAAACCATCGGGAC
CTGGTGCTGCAGTTTGGGACAGATCGTTGATTGCTTTTATTAAATCATCT
TCTGACAAGTACAGAAGCAAGAAGAGAGTGAAGAACGAGCTCTGAAGACT
CATATATTGTTTTATAAAGTCGCAGTCAGCAGCAGCGAATGCAATGCACC
TTCTTGAAATGTCAGATGCAAGGGTCACTAGGACTAGAAGGTGGGTGGGC
AGATTGACTTGGGAGGGACACAGAGACAGAGTTGTTTTCATTTTATTAGG
TATTTATGATTACTTTTTTTTTCAATATCATGATAATCAATAATATAATG
TATAAGTATAGTCCGGTGTTTTGTCTGGTGCCAAAAGTATCCCTCTCAGC
CACACCAGATCAGAAACCTTTTGTTTGGTGTTATAGTCCAGTGTTAATTT
TTCGAAGTTCTGGATACTGTGTGTTTCAAAATAATGCTCACCGGACTCAA
GTCCACTGTTGCAGAGGTGCCAACTCTAAAGTAGTGCTGAAAAACACTTT
TCAAAACACTTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAGAA
AGTTTACACACAGCCTAAATCTGACCTTCAGACCAGTTCAGACCGATAAT
TCCTGAAAAATTCTTATAAGAGAAATGTGCATTTACAATACAGTAGCTTC
AAACTCTTAAAGAGAAATATTAATAAAGATAATTCTCATACATAATTGTA
TATGTGAGTATTATCTTCTTTATAGTGGAGGTAAACTGTTTTTCGGTCGT
GTTGTTTTTTGTAATCTTTTAACTTTTTAAGCAGACTTACAGTACCTGTT
AAAATATCAAATTTCTTTTGATAGATTTAACTGACATAAAAATGGCGCAA
ATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGTATGCAGTGGAAG
TAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTTCCTCATTATCAT
TGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATCCTAAAAGAATAT
CACATGGATGCTCAAAAGATGATCTTATTCATGGTCTTGTCAGCTTTCAT
TGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAACACATGGTGCAA
CCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGATTGGGCTACGTTA
TTATGGGTGACGATGATCACAACAAATTTGATTTTAATCATAAAAAATAA
ACAGTCACCTAAATATTATTATATTTACCATGCCGTTGTTTGGCTTGGTG
CTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACATACGGTCATGCA
GGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATATAGGTTTGGAAC
ATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGTGTATCACTCTTG
GCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCCCAAACTGGAGTC
TCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAATGAATTGAAACG
ACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATATTCCAACCTTAG
CTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAACCCAATTATGGC
ATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGGAGCTGCTAATGC
TATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGAACCTAACATGGC
CAATGATCAGAAATAATGTAATATTGTTGTTCAAACGTGAGACGCAAACG
CAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACAAACAAGTGATTC
ATCAGAGCAATATCAACCGATGCCTTGATTTTTTTTTGGCAAAATCTAAT
TCAGAACAGTACAGCTTCTGGTTACACGAAATGTTGTTCTTATGAAAAAG
GTCCAGAATCAACTGAAGCCAGTAGGCGATATCAACTGATACCTTGATTT
GCTCTGATAAAAACTGGTGATGAACAGTATCTACACTGAAATGACAGTGT
AATCTTAAGATTTATATTATAAAGCTATAATCAATATATTTTATAATTAT
AATAAAGGGTAGTCATAGTCAGCAAAACTCTATTGAAGTTAGAAGTCTAT
TGAAGTTAGCTCTAGAAACGGTGAATTAGCCCGATTTTCTACTGAAGGTC
TTTCTGATCTTTTTTTCGGACAATAATTGGAAAACTATTGCCCACTAAAA
ATTTTGTTTCATTATAAGCATTTTGTTTATTTGGCTTATCTGATAATGTT
TAGTAATAAGGTCCGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGG
AGGCCGTTTATTTGGAACCTAGGACTACCATATTTCATAAAATATATCAT
TTCTGATCATTTTGGTATTCTAACTTTCGCTTTCAAACTTTCGCTTTCAA
ACTTACAAAAGTACGAAAAGAAAAAGACAGGAATTTTTAAATGAGAGTAA
AATATAAAGTATGACATTTTTTTAAAAATCGAAGAAAATTTTTCAAGTAG
GTCCTTCTAAGAATCAACTATTCAGCAAAAATCGGTCTCTCTAAGGGTCG
GTTTTCGGAAGTCCCGTCCGCACATACCCCTCATCCACCAAACCTAGTAC
TCCCCCGGACATCATTCCATTTCATAAACAATGAAAAGACAATACTTCGC
TTCCACTGTAAGGGACAAGCTGGAGTTTTTACAAGCTCTCGTTTGATTTG
GTTGGTCGTTAACCTGTAATAAAACAATTTTGTTACTTTTTCTAAAGAAC
GCGTCATCTCTATTACTTCAAATAACCAATCAATTAGTGAAGTCTCTTAA
AAAAACTCCAGCCCATCCCCACTGTAACGGGTATGCAGGTTTATTATTTG
ACTTGTCACATGTTAACAATCTTAATATTAATAGACAAGTGTCGCTTAGC
AATGCACTTTAAGTATTTAATTCAGGACTCAAAACGTTTATAATTTCCTC
TTATAATGATATATTTATTAACATGCAATACGGACCACTCTTTGAAAGGA
TCAACCGATTTGATATCTATAGAGTCAAATTAAACTTTCTAGACATGAGA
TTTTTATCCTAAAAGGTTAAGAAATGGACCAAAACTATCCATAAACCCTG
CGTTATGTTTTCCTTTTATGCTTTGAAACCATCTTTTTATCCTTGTGCTT
TATCCAATTTGGAAAAGCACATTTTCGCACTGATTTATACCCCTAGAAGT
TTTTTATTTCCAAATTTGCTTGTAGATATTCTTCCACTGCATTTTTTATT
ATTTATAAAATAAAAATTTTTTTTTATAAAACTCGGTATAAATATTTTCT
TGCATTTTTTTATATTTTCATTTCTAGATAATTATTGCATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTAGCATATTATTTCATATTATCCACGATTTATATTAAATTGA
AAATGTGTATTTAAAAAATAATTTTTCAGTTAATCGGTAATAATAAGGCA
G Coding sequence (CDS) from alignment at sc0000167:54013..58063- >TCONS_00013409 ID=TCONS_00013409|Name=TCONS_00013409|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0000167:54013..58063- (Clytia hemisphaerica)
ATGGCGCAAATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGTATG
CAGTGGAAGTAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTTCCT
CATTATCATTGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATCCTA
AAAGAATATCACATGGATGCTCAAAAGATGATCTTATTCATGGTCTTGTC
AGCTTTCATTGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAACAC
ATGGTGCAACCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGATTGG
GCTACGTTATTATGGGTGACGATGATCACAACAAATTTGATTTTAATCAT
AAAAAATAAACAGTCACCTAAATATTATTATATTTACCATGCCGTTGTTT
GGCTTGGTGCTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACATAC
GGTCATGCAGGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATATAG
GTTTGGAACATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGTGTA
TCACTCTTGGCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCCCAA
ACTGGAGTCTCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAATGA
ATTGAAACGACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATATTC
CAACCTTAGCTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAACCC
AATTATGGCATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGGAGC
TGCTAATGCTATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGAACC
TAACATGGCCAATGATCAGAAATAATGTAATATTGTTGTTCAAACGTGAG
ACGCAAACGCAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACAAAC
AAGTGATTCATCAGAGCAATATCAACCGATGCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013409-exon-sc0000167-1575043694:57881..58063 | TCONS_00013409-exon-sc0000167-1575043694:57881..58063 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1575043694:55297..56689 | TCONS_00013409-exon-sc0000167-1575043694:55297..56689 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1575043694:54013..55083 | TCONS_00013409-exon-sc0000167-1575043694:54013..55083 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1510915933:57881..58063 | TCONS_00013409-exon-sc0000167-1510915933:57881..58063 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1510915933:55297..56689 | TCONS_00013409-exon-sc0000167-1510915933:55297..56689 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1510915933:54013..55083 | TCONS_00013409-exon-sc0000167-1510915933:54013..55083 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1491911889:57881..58063 | TCONS_00013409-exon-sc0000167-1491911889:57881..58063 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1491911889:55297..56689 | TCONS_00013409-exon-sc0000167-1491911889:55297..56689 | Clytia hemisphaerica | exon |
| TCONS_00013409-exon-sc0000167-1491911889:54013..55083 | TCONS_00013409-exon-sc0000167-1491911889:54013..55083 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:54013..58063 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007166 | cell surface receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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